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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0463200 |
Transcript ID | LotjaGi1g1v0463200.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein; TAIR: AT3G56470.1 F-box family protein; Swiss-Prot: sp|Q9LXZ3|FB204_ARATH F-box protein At3g56470; TrEMBL-Plants: tr|G7KT89|G7KT89_MEDTR F-box protein; Found in the gene: LotjaGi1g1v0463200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96811386..96816082) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAAGTCTCACAACTCTTGCTTACAACTTTCATGAGCAGTAAATGTCACCCTGGAAAAAATAAAATAAAGAAGTAAGA TAACTAAAAAAATAAAAAAATTAGACACCCAAAAAAAAGTGACATTGGAGAAGTGTTTGGACACGTAGATTACGGGAATT GAGTTTGGTGCCCCACCCCTTAGGCTTTGCACCCCACTTTATTAAATACGGAATTTTTAAATTCCGTATCAATACGGAAA ATAAAATTCCGTATCTATTTTAGTATATAATGAGTGGTTGAAAATGTGACACGCATGCTTAAATACAGTACGGAATTTTA AGTTCCGTATTCAATAGGGAGAATACGGAATTTTAAATTCCGTATTTGATAAAGTGGGGTGTCAAGCCCCATAGGTGGGG TGTCAAACCCAACTCCCGTAGATTACCCTTTTTATTATTTTCAAAATCAGAACCCCTTACTTCTCTCCCCCAATTTCATT CCATTCGCGAATGAAGCTCTCTTCTCCGCCGTAGTTCCTGTGCGTCACCACCGTAGCTCCGCCGATGTCCTCACCGTCGG AAGCCATCGTGAAGAAGCTCTGCAGCGAAGGCAGAGGTAAATTCATCCACTCACTTTCTCAGCGACACTTCAATAATCAT AACTTGTCTCTGTTTTTTCATGCATTACACTATATATATATATATATATATATTCCAGTTTGATTCTACGAACAATGAAA TCTCTGTGTTTTGCTTGAAATTGAAACCATGGAAGAAGTAAATTGCTCATTTGTGGTATAATTCACTATTTAATCTGATT GAATATCGTTTCTTCCATGTGAAATTAAGCGTGGAATTTTCCATTTTGATTGATTATCATTTCTTTTTCTTTCTTTGTGT TGGGTATCTGGCTCTGAACACTGATTGCTGGAAAGAATCTAGAGTGCATGTTTTGTTTTAGGCTTCAATTTCCTGTTTAC TGCTTTGGTTCATGCATGGGCATCTTTTACACTAACAGTGAAAGCCAATTAAAGATAAGGAGAAGAAAAAAAAGTTAAGG TATTGGGAACATTTCAATTTTGCTCTTGGTTGTTATTAGGTTTATAGCTTGTTGATTTTGTACTGTTGGCATTGCTGTGT ATCGACCCGTGCAATGTTGTAGCTAACGCATTAAGTATCCCGCCTGGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAA TTGACGGGTCCTGCACAAGCGTTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCC GCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGGCACAGGTGGTGCATGGCTGTGTAGAGAGCATGCAGTGT TGTTGCTGTACTGCTGTCTTTTTGTTTCATGTTACTGACTTGGCTCATTCGTTATTCTATTGTTTTATCACCATGTGGCT CTCATACCATCTTAATTATGGCATACCTTACTTTTCATTCTTTAAGCATTTATACCCTCATCTTTGTGTGTTTGTTGCCT GGATCTGGATTCGCTGCAGTTGAATGCACTGCAGTCGGCCTTAATTGCCGTCCGATCAATAATATGGCTCAGATTCATTT AAAGGTTATAATATTAATTTCATTAAATATGAATGGTCCGATCATAATCCAGCGGTTGTGGTTCTCTGACTGCAGTGAAT GTTGGCAAAGTCGACAGGAGTGAATCCAAATCCTACTTGCCTCCTTACTTTTCATTCTTTTGTATATTTAAGATACTATA ACTAGTACTAATTAAATTATTTCTTTCTTGTCCAATAAAAGCCCTTCCTTTGATTTTCTATTCTATTACGAAGTATTAGA ATTCAATTATCCATTTAAGCAAAGATGATCAAAGGCCACAAATACATGATACCATAATAAACTATAGAAATCCTGCTATA ACTTTGTCTCCTCTAATATATCTATTCTCAACTTTCTCCATATTAGCTTCTTATGAGTTATCACTTCAGCTTAGCTGAGA TTAATTACTAAAGTGGGTAAAGGTTGTGAATTGTAATTTTTTGATTTGTTGTAGTTGTAGAATGTAGTACTCTTCATTCA TGTTGTGTGCGTATGACATGAAGCACCGGTACGCAGAAAATGGAGCCGTATCCGTACCGGGTACGTAGTACGCACTGGGT ACGTACTCAAATGTAATTCCAAACAACAACAAAAAGGGTACTTATGTCAAAGAAACTAGGGGAAAAAAGTACAACACATA CGTCGATTTCAGTTTTTTTTTTCTGGTCTCATTCATCAGCGCCTTTTTCTTTTCTTTCTGATTTGTCACCTATGCAGCTA TGCTATTTTAGTTTGATATATTTTCCTATTTTTTATATAAATTAATTATATATATGTTTGCGTACCCATACCCAGGATTT AAAGAACCATGTACCTCGTACCCGCACCGTTCCTGTTTCCGTGCATCTTCCCGTGCATGTTCGGCATGTCTAGTAATTCT TAAAATTTTGCTTTCCATCCTTTCTTGTCAACCTCAAGGATATATAACATATAATTATGCCTGAAAGTAATTTTTTTGGT TGCTTTGATTACTCTATCAGGCTTAGGAAAGTAGTTTTTGCTCATTGTATGGTTTTATCTCTCAATCTTGCTGACCAAAG TTGTGCATGCACAATAGTTTCTTTGCATACTTAAGTAAAACCATGAACAAGATGTTAGATGTGAGAATTGATGACTGTTA TGAGCTTTTATTCACATCACTCTATGAATAAAGTTCAGGACCACTCGCTATTTTTGTTCTCTTTCTCCTCCAAATAAAAC TATTGGGAGATGTTATGTTCTGTATGATTGTTTTATTTAGGTTCATTTATTGTGTTAGTGTCTTTTTTTTGGGCCTTCAA TTTGTGGTAGTGTCTAATTACCATTTCTATCCTAATATTAAGCTGTAAATATATGGAAAACTTTGAAATTATACATTTTC CTTAAACCTGAAAGTTTGAAATTATGGATCGGTCAAAAGTCCAAACCATGATTGACCTTGATATTTATGCAATTATGCTG TTTGCTAAAAAGGAAATTTTATTTTCCCCTTGTAAATTTTCTTTCTTCTTCATTGCATTTAGATTCTAGAAACATTGTTT TAGGGTTTAGGGGAAACATCTTTCTTTATCTCCTTATTTTAGATGATATTATCACATGAATGAACAAAATTATATGTATT CCTTTTTTACTGTTGGAAATCACATATCTTCTCATTTTTGTGATACACAGGAAACAAAGTGAAGAAGGTAGAACGGAACA ATGACCTTCCAGAGGTAGAAAAGAACAATGACCTTCCTTCGGATGTGCTTGGGATTATTTTTAGAGAACTAGATTTCGAT GACCTCTTCGAATTTGCTGGAGTATGCAAGAGCTGGAGAATTGGTCATAAACATTATTTGTCCGATTTCATGAAATCTCA ATCACCTTTCATTGTTGAAACAGCATTACTGGCTAATGAAGTATGTTCTTTCCTTAGTGTACCTGATCTGAAGATCTATC GCTCGACGATGCAGTACTTATCAAGATTACACTATGTTGGGTCTTCTAGTGGCTATTTGATCATGGCAGGTTTTGACAAA CAGAATGAATATCTTTTGCTGAAGAATCCGTTTACAAGAAGAATGAAAAAAATCAGTACCTCTGCCCTTGAAGGTAAGGT GAAATTATGGGTTTGTCGTGCATTACTTGCTTTTGTCAAAGGTTCTGAGGAGTTTGTCATAGTAGTTTCAGCACTCAAAC ATTCTTCTTATGGTTTACATGTTTATCAGTCTCGAAATTCCTCTTGGATTTCATATTCAATAAGGGATCGTGTTGTGGCC TTAGTGGTATTGCACAATACTATATATGCTCTTACTTCCCAGAAAAAGATAGGGGTGCTTAGTCTGAATTCTGCAAGAGT AAAATTTCTAAATTTGAAGAATACTCCCGAATACCCTATCCGTAGTTTGTTTACTTCTGATGGGCAACTTTTAGTGCTTA ATTTTGAGCCCGGGAGAAAATTGAATGTGTACAAGATAGACTTCTCAACCATGGAATATGTTAAGCTCGAAACATTGGGT GACCTAGCAATATTTTATTCATTGTACAATTGTCATGCATTGAGCAACCCAGGTAGATGGGGATATGATAGCAACTCTGT GTATTACATTACTACCGCTCATGGCAGACTTAATCCAGGATGTGAAGTGTATTCATGGAATAATGAACTGAAAAAACGAA TCACTCGTGATGAGTTTGGAGCTCGTCCTCAAGGGATTTCATCACTGCTCTGGCGCGATTGGTGTTTCCGACATGAACAT GATGAGGTAGATTATTCTCTTGTTGATTAACCTGCTTGGTGTTTCCGACATGAACATGATGAGGTAGATTATTCTCTTGT TGATTAACCTGCTTATTGGATGGACTCCATGCTGCTCGTGAGTTTTTTGTTTGGACATTTATCGATCCGTATTTTGCTAG TTTCTTTTGGCTCAATTGGGAAACACTTGTCGTGTTCTCTTTCAATTACTTATTTACTTATTTGACTCAATTGGAAACAC TTGCCATGTTGTCTTTCAATTTCTTTGCTTAGTTTGTTATTTGACATCCAATTAGAATTCATCAATTTGTTATGTGATGA TTAAATTTGAATTTTAAATAATTTAAAATAGAAAATGAAGAGATGACATTGGATGCA
CDS sequence (LotjaGi1g1v0463200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTCACCGTCGGAAGCCATCGTGAAGAAGCTCTGCAGCGAAGGCAGAGGAAACAAAGTGAAGAAGGTAGAACGGAA CAATGACCTTCCAGAGGTAGAAAAGAACAATGACCTTCCTTCGGATGTGCTTGGGATTATTTTTAGAGAACTAGATTTCG ATGACCTCTTCGAATTTGCTGGAGTATGCAAGAGCTGGAGAATTGGTCATAAACATTATTTGTCCGATTTCATGAAATCT CAATCACCTTTCATTGTTGAAACAGCATTACTGGCTAATGAAGTATGTTCTTTCCTTAGTGTACCTGATCTGAAGATCTA TCGCTCGACGATGCAGTACTTATCAAGATTACACTATGTTGGGTCTTCTAGTGGCTATTTGATCATGGCAGGTTTTGACA AACAGAATGAATATCTTTTGCTGAAGAATCCGTTTACAAGAAGAATGAAAAAAATCAGTACCTCTGCCCTTGAAGGTAAG GTGAAATTATGGGTTTGTCGTGCATTACTTGCTTTTGTCAAAGGTTCTGAGGAGTTTGTCATAGTAGTTTCAGCACTCAA ACATTCTTCTTATGGTTTACATGTTTATCAGTCTCGAAATTCCTCTTGGATTTCATATTCAATAAGGGATCGTGTTGTGG CCTTAGTGGTATTGCACAATACTATATATGCTCTTACTTCCCAGAAAAAGATAGGGGTGCTTAGTCTGAATTCTGCAAGA GTAAAATTTCTAAATTTGAAGAATACTCCCGAATACCCTATCCGTAGTTTGTTTACTTCTGATGGGCAACTTTTAGTGCT TAATTTTGAGCCCGGGAGAAAATTGAATGTGTACAAGATAGACTTCTCAACCATGGAATATGTTAAGCTCGAAACATTGG GTGACCTAGCAATATTTTATTCATTGTACAATTGTCATGCATTGAGCAACCCAGGTAGATGGGGATATGATAGCAACTCT GTGTATTACATTACTACCGCTCATGGCAGACTTAATCCAGGATGTGAAGTGTATTCATGGAATAATGAACTGAAAAAACG AATCACTCGTGATGAGTTTGGAGCTCGTCCTCAAGGGATTTCATCACTGCTCTGGCGCGATTGGTGTTTCCGACATGAAC ATGATGAGGTAGATTATTCTCTTGTTGATTAA
Protein sequence (LotjaGi1g1v0463200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPSEAIVKKLCSEGRGNKVKKVERNNDLPEVEKNNDLPSDVLGIIFRELDFDDLFEFAGVCKSWRIGHKHYLSDFMKS QSPFIVETALLANEVCSFLSVPDLKIYRSTMQYLSRLHYVGSSSGYLIMAGFDKQNEYLLLKNPFTRRMKKISTSALEGK VKLWVCRALLAFVKGSEEFVIVVSALKHSSYGLHVYQSRNSSWISYSIRDRVVALVVLHNTIYALTSQKKIGVLSLNSAR VKFLNLKNTPEYPIRSLFTSDGQLLVLNFEPGRKLNVYKIDFSTMEYVKLETLGDLAIFYSLYNCHALSNPGRWGYDSNS VYYITTAHGRLNPGCEVYSWNNELKKRITRDEFGARPQGISSLLWRDWCFRHEHDEVDYSLVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 11 | 381 | 371 | 1.3E-89 | – | |
PANTHER | 11 | 381 | 371 | 1.3E-89 | – | |
ProSiteProfiles | 33 | 67 | 35 | 9.471 | ||
Gene3D | 37 | 71 | 35 | 4.5E-7 | – | |
SUPERFAMILY | 37 | 68 | 32 | 1.22E-6 | ||
Pfam | 38 | 68 | 31 | 6.1E-7 | ||
SUPERFAMILY | 195 | 342 | 148 | 9.81E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0463200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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