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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0465600 |
| Transcript ID | LotjaGi1g1v0465600.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium lipid binding protein, putative; TAIR: AT3G61050.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A0JJX5|SYT4_ARATH Synaptotagmin-4; TrEMBL-Plants: tr|I1L6S3|I1L6S3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0465600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:97360975..97367904) extracted from Lotus japonicus Gifu genome v1.2.
TGTGGACTTCAGCATGGTGTCTGGACTCTGGATCCTGTATACTATACTGATTAACCACAGCACTGGATGAAGACAACAAA AATAGGCTTAAGAGGAGAATGAAAAAAGAAGGCATTGTATTTGTATTGTACCCTTATCTTAACAATATTCATTTTTCTCT GCAGGCGGTTGATGTTAAACTCCTTGGGTCCCTTAACAGAGATGATCTAAAGAAAATTTGTGGTGAAAATTTTCCTGAAT GGATATCTTTTCCTGTATATGAGCAGGTGGGATTCTCATCTGTTACTGTAATACTTAGCTTTCTACTGAAATGATTTAAC AAAACGCTCCAATTATTCCAGTATTATATTATTGGCAAGCCAAGTTAAAATTTGAAACTCCTTTTTTGTTTCCTAGTTCA TATACTCTTTATGTTTTCTTTGAATGATCCTTCCTTGCATGGGTTTTTTCAGGTGAAATGGCTAAATAAGCTGCTGTCCA AACTATGGCCATTTGTGGCAGATGTGAGTAAACTTGCATGCATGTTTAATGTTTGTAGAATAATTATTAAACAACAGCAG CTTGTGTCATGTTGTTCATTGATTTCTTACTAAATTTATTTTCTAGGTTAAATCTTGATATTTCACTTGTTTCTGTTCTG TAGTATTTTATTTTACAAAACATATTTTGTTCATAATATTGGTTCTAACCCCCCAGTTGTTCAGTTCGAATGAGAAAAAG AACAAACTGGATCTATTGATTATGGAGAGATACTGAATTCAATATTCTTATTTGATAATCTAGTGTGGAATTTGGGGGAA GTTAGATGTATGAACTATGAAGCCTTACCCCAAGTTGAGAGGCTATTTCTGTGACTAGATTCAGTGACCCCTAGTTCTGT ATGTTCCCTGCATCATTCACCTTGCTTTCCTTAGACATAAATCCTATTATGCTTAGGCTGTAGGAGACCTTTTTTTATTT GTTTTCCTTGCTAATATTCTTTTCCGAGGATTATTCCTACATTGCTTAAATAGCTGACTTATGTTCATATGGTTGTTTTT AATGTTTTAGGCAGCAACTTTGGTGATAAGAGAATCTGTTGAACCGTTATTAGAAGAGTACAGACCTCCTGGAATTACTT CATTGAAGTTCAGTAAGCTGTCTCTCGGAACTGTCGCTCCGAAAGTTGAAGGTATTAATCAGCAGTAATTCCTCTCTTCT TCCTTTTTCCTGCTAGGTCATTATGGTATTGAGTGGTCTATATGTAGCCAACCCCACTTAGTGGGAATAAGGCTTTGATT GTTGTTGATGGTTGTTATTCTTTCCCAGCCAAATTTACTACTGTATCAGATAATGAGGTTGATTGTTAGAGTAACCAAAG TGTGACTCAAAGAAGTCCCACATTGTATAAATAAACAACTGTACAATAGTATATAAGTTAAAGGACACACACACCCATTG CCTTAAGTGCCTTAAGGTTTTGTGGTGATATGGAATTATGGTTTTAACTTTATTCTAACATTTATTTATAACTGATATGT CATTCTATTTTGACAACAATTCTTCTTTTAAGCTGCTTCATATGTGACTATTTTCAGAAACAGATCATCTAAATATCTCA ATTTTTCATTTCTATATATTTTTTCCCTTTCTTTGCCATTTAACTAATTATTCTCTGCCTTAAGAGAGAGAGAGGATCTT TATGCACTATGTTTTTCATTTTTTCTCCTTTTTCTCTCCTTGCAACTATTTTCTTTTTTCGAAAGCAAAATCTATTGATA TATTGATGAGGAAATTGACAGGATATACATCGAACTACTTTTTAGAGAGGTTGTCCCTCTCTTAGGCCTTATTTATATTA GCAGATTAAACTTTCTTTGTGGCTTCTTATTGGTACTCCTCTAATGGATGTTTGAGGTGATTTTTTTACTGATATCCAAA GAGATTGGACAGTTTTATTCATCTTTCAGCCACTTTGACTTATTGTTTCCCACCCTCTCTCTGCATTAAGATTTGTTATC TTCTGCCTAATGTACATGCTTCATTTTCTTTTATAATTATTTTCATTTTATTTCATTTTTCAAGTTTTGCGGAGGAGTCC ATGTAAACATGTATCATGAACTAAAACCAATGCACAACTATATCTTAAAACTTCCAGCAGTTAAAATAAAAATCATCATC AATTGCAGTTAATAATATAAAGAAACCTCAGTCTTCTCTGAAGAAACACCTTCCCACCATCAAATCTTATTTGCCCTCAT TTTATACTTTCTTGCTCTAGCAAGCAGCTGGTAAGCACAAATCCATATCTTGATGTGTCAGAGCCAAGTTGAAAACTTGT TTGAGCAAACGAATTTTATCTTTGTAGAAAATATCATTTTTATTTGCTATAGTTGCATTGGTGCATGAAATATGCTGGAC CCAACACTTCATTCGTGATGACTAGTGACTAGTGAGGGATTGTTAGCACGAAAATTTGAGATTTGCGAACTGTTTTTTAA TTGACGTAAAGAATGGAGGCCAGGAATGACCAGTCTTATACTAGTGCTAAAATGTTCAGGGTGAGGTCCAAGGTCATGGC ATGCTAGAAGCTTGAATTAGTGCTTAAACTGGTACTTACAACTGATCTACCTAACAAGGAGTCAAACCGAAATATTCATA CCCAAAAGCAACACATATTGTCCATAATCTCTTTTCAAAAACAGGGAAAGAAGCAACTATCGTGAGATTCAAGATTTAAT ATGTCTTGAATCGAAGTTAATTAGATGAAATGGATAAATCAACTTTGAAGTTTTTGCAGGTTTAGAATAAATCAAAATAT TTAAGTTGTGTGTGCCATATGCAACATAAGCTTTATAACAATAATTTTATAAGTTAGAATCTACGTATATTGTATTTATG AAAAATGAGCACATAGTTGATGAGATTGTTATTAAGATGTTTGACTTATGCATGTTAGCAATATTCAGACCAAACAAAAT GTTATCAAATGCAATTTTTATTCCACCTTTGTTTTTTCTTCCATTATCAATATCTCCGTCGAGTCATTTTTGTATATCAA GAAATAATGCATGCATAGTTTCTTCATCCATTCAGGTATTCGTGTTCAGAGTCTTAACAAAGGTCAAATCATAATGGACA TTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGGTGTTGAAGCAGCACTTGTTGCATCAATCCCTATTCAGGTT AGACTGAGCAGAATTATTCTATGTTGAATTTCATGTTCCTTTGCTAAATTTCTAAATCTTGAGTGTTATTGGTTTTTGCT TCAGTTGAAGGATCTCCAGGTTTTCAGCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCCTGCATTTCTGCTG TTGTTGTTGCCCTACTTGCAGAGGTAACCATTGAAGGGTGATGTTCTACTAAATTTCTTAATATTCATTTGCAGTTTCGT ATGTGCAAACCCTTTTGCATGCTCTTGCAAATCAAGCTAAAATCATTGGTAGACCATTGACCTTAAGCATGTTTCCACTT CATGATTGTGTGGCATTAGTTACTTTTTTTCTTTAAGAAGAAATTGACGTGAGAATTAAATTTGTTGGTTAAACAAACTG AAATTTTTGATAATTGATCCCTTCACATCAAACTTATGTTCATCACATTTTAACTATTAGCTTCAATGGTTTTATACTTT ATCACACTATGATGATGTTATGGTTTAACTCGGACATGATTGTTTATTATTTATGTGTTCTAGTCTGTTATCTAAATCAA TATTCTAAGATTACTTTTATCAGCATTGTCTACGGTTAGAATAGTAATATAATACTAGTTATATGTGTACACGTAACAAC TTAAGCTTTTGAGGTAGTTGATTCATGACATAGTATTAGAGCCTCTTTGACCAAGTGGATATGGAGTCCAATCCTTGTTG CCTCCAAATTCTAATAAATTTGAGTTTCAACACAAGGTAGGTGGACTTGTGCATTGTCCACGCTTCAAGCCCAATGACCA CTTGCATGAGAGAACACTAGAAATAAAATATAAAACCATTCATTTGTCTTCTTCACCCAATAGTTTAAGCTTTGGGAATA GTTTGTTAATGACACCAACACCCATTATGTGATTGTAACCGGGGATGCTAACTTTAACTTTCAGTCTTGGAATTACTGAC TTTTCTGTTAACATTTAATCACCGGATATTGGAGTATATATGATTAAGTTGTTATCAGTGTTAAGAATCCTATTTCTATC ATTTAGTTAGAAATAGGTAGTAACAGCTATCAGCTAGAAGTTAGTTTAACGCTGTTGAGCTTAGCAACTGTCTGGGGACA CTTTATAAATGTCTGTTGTATTCATTCACAGTTGAATAAAGATTCAGTTACTAGGATTTTACTTTCTTTCTCATTTTATA ATAGCCGAAGCCTAGAATTGATTACACTCTGAAGGCTGTTGGTGGGAGTTTGACGGCACTTCCTGGAGTTTCAGATATGA TTGATGTGAGTTCTATTTTATGAACTTTCCACTTTTTTCCCTTTTACTGATTTTGAATTAAAATTTATAATCCACTCTAA CTTTTACGCACCATTTCACAGGATACTGTGAACTCAATTGTTACTGATATGCTCCAATGGCCTCATAGGATTGTTGTTCC ACTTGGTGGTATTCCTGTTGATACTAGGTAATGTGAATCTTATGGAAGTTTTGTTTGTTGTTTTTTATTTCTGGATGTCA ACCAAAGCATGTCTATGTTTGTTACCATATCTAATAAGTAGTATTTTGAAGTGAATTTGAAATTGTTCATTTTTTTTTTC TCTCTCCTCTGCTCCTTTGAGTGAAAGGAAACAAATTGAGATTTGGAAATATGCTAATTCAATGTAATTGCTCAAACATT TTAAACTGCTTAAGCACCTTTAATTATTTTTTTATTTACTTGCAGTGAACTGGAGCTTAAACCGCAGGGAAGGCTTACTG TGACTGTGGTGAAAGCAAATGATTTAAAGAATAAGGAAATGATTGGGAAGTCTGATCCTTATGTGGTTGTGTATATTCGC CCACTGTTTAAGGTTAAAACGAAGGTTATTGATAACAACCTCAATCCTATTTGGAATGAGGTCTTTGACTTGATAGCAGA AGACAAGGAGACCCAGTCACTCATTCTTGAGGTTTTACACTACTAATACTTCACATTCTTCTTTTATGCTACTTTATTCT GCATCATTTCTTTTGGATATTCCATGTGACATTGTGCTTACTCTAGTTCTAGGAAAGTAGAATATATCTTCCTTGTTTGT GATAATTACTTATTGAATATTTTTTTAAAATCAGATATATTCAATATATGAACATGAAAGTATCCTAAATACAGTCTATT CAATATATGAACATGAAAATATCCTAAATAGAGTCTGTTCAATAGTTAGAGATAAATGAAGACGTAAAATCCTAGTGAAG CCATTACAAGGACTTAGATCTAAATGGCCTCACCGGTAAACTTGGTATTTGAAATAACAGGTGAGAAATGTTACATTGCT GTTTCTTTAGTGGTATATTTCTCCCCCAACAGATTCCAACACTAGTGACAATTTTACGTAGTGGTAGTAGTGTAGTACTA GTGTATATGAGAATATATATACTCTCGAAATGGTTGGTTTCTTATAGGCCATGAGTTATTAGAAACTTTTCAATTCCGGA TTTGGACAAGTTCGTACTTTAGGACCTGTTTGGTTTGAGAAAACATTTACAAAATTGCTACTTTGTTTTTATATTATTTC CTATTTTTGAAGCTATGAGAAAATAGTTTTTTTGTTCTTTTCATTGTTTCCTACGCGAATCTTTAGAATTAGGAAACGAA GTGAAAATAAAGTGATACTATTGCCATTATTAATGAAAATAGAAATGAATAAAAAAATATGTTTTCTAATCAATGACATT TATTTCCCCCCATAAGGTTTGATTATTTTTTCTTTACACAGCTACATGTGTTAATATTTTAGTTTGAAATCTTCTAATCT TTCCCAATAACTGCGCAATTCCCGTGAAAGTGTTTCTATTACATTGAAATAAATGATTTTCCCGGCTTTGTGAATAGGTT TATGATAAAGACATTGGGCAAGATAAACGATTGGGAATAGCAAAATTACCACTGATTAACCTGGAAGCAGAAACTGAAAA GGAGCTCGAATTGAGGCTGCTGTCATCACTTGATACCCTGAAAGTGAAAGATAAGAAGGATAAAGGAACCTTGACAATAA AGGTATAGCTAGACATGCATTTATTTGTTTGTATTTGGGGATGACATCATTACAAAATTTCTTGGGCTATGCTTGATACA TATACTCATATAGATCAAAACTAATAGAGTGAAACATTTTTTTCCTTCCCCTCTAATTTTCCTTCCTATTCTGTATTCAT TTACATGCTGTGTAAGTTGATTGAAGTTATAACTTATAACAATCTGATTGGAATTTCAGATCCTTTATCATCAATTTGAC AAGGAAGAACAGTACGCTGCACTAGAAGCGGAGAAAAGGATACTAGAAGAAAGGAAGAAACTGAAAGAGGAGGGAGTTAT TGGAAGCACAATGGATGCACTAGATGGAGCGGCATCAGTAGTCGGGTCTGGTGTTGGAATGGTTGGTACTGGTGTTGCTG CTGGTGCCGGGCTTGTGGGAAGCGGCATTGGTGCTGGAGCCGGGCTTGTTGGCAGCGGCATTGGTGCTGGAGTTGGGATT GTTGGAAGTGGTCTCGGTGCTGTCGGTAGTGGACTGAGCAGGGCTGGTAAGTTCATGGGGAGAACAATCACAGGGCAAGG TGTATCCAGAAGGAGTGGTTCTTCTACTCCTGTCGCTAATTTTGAGGAGAATGATGGTGGTGCGAAGCCACGGTAATTCT TGCATGGACACTGATAGAGTAATGGGAATGATCTTGAATCCTTAGTTTAA
CDS sequence (LotjaGi1g1v0465600.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGGTGTTGAAGCAGCACTTGTTGCATCAATCCCTAT TCAGTTGAAGGATCTCCAGGTTTTCAGCATTATCCGTGTTATATTCCAACTTGCTGAAGAGATCCCCTGCATTTCTGCTG TTGTTGTTGCCCTACTTGCAGAGCCGAAGCCTAGAATTGATTACACTCTGAAGGCTGTTGGTGGGAGTTTGACGGCACTT CCTGGAGTTTCAGATATGATTGATGATACTGTGAACTCAATTGTTACTGATATGCTCCAATGGCCTCATAGGATTGTTGT TCCACTTGGTGGTATTCCTGTTGATACTAGTGAACTGGAGCTTAAACCGCAGGGAAGGCTTACTGTGACTGTGGTGAAAG CAAATGATTTAAAGAATAAGGAAATGATTGGGAAGTCTGATCCTTATGTGGTTGTGTATATTCGCCCACTGTTTAAGGTT AAAACGAAGGTTATTGATAACAACCTCAATCCTATTTGGAATGAGGTCTTTGACTTGATAGCAGAAGACAAGGAGACCCA GTCACTCATTCTTGAGGTTTATGATAAAGACATTGGGCAAGATAAACGATTGGGAATAGCAAAATTACCACTGATTAACC TGGAAGCAGAAACTGAAAAGGAGCTCGAATTGAGGCTGCTGTCATCACTTGATACCCTGAAAGTGAAAGATAAGAAGGAT AAAGGAACCTTGACAATAAAGATCCTTTATCATCAATTTGACAAGGAAGAACAGTACGCTGCACTAGAAGCGGAGAAAAG GATACTAGAAGAAAGGAAGAAACTGAAAGAGGAGGGAGTTATTGGAAGCACAATGGATGCACTAGATGGAGCGGCATCAG TAGTCGGGTCTGGTGTTGGAATGGTTGGTACTGGTGTTGCTGCTGGTGCCGGGCTTGTGGGAAGCGGCATTGGTGCTGGA GCCGGGCTTGTTGGCAGCGGCATTGGTGCTGGAGTTGGGATTGTTGGAAGTGGTCTCGGTGCTGTCGGTAGTGGACTGAG CAGGGCTGGTAAGTTCATGGGGAGAACAATCACAGGGCAAGGTGTATCCAGAAGGAGTGGTTCTTCTACTCCTGTCGCTA ATTTTGAGGAGAATGATGGTGGTGCGAAGCCACGGTAA
Protein sequence (LotjaGi1g1v0465600.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDIDFRWGGDPNIVLGVEAALVASIPIQLKDLQVFSIIRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAL PGVSDMIDDTVNSIVTDMLQWPHRIVVPLGGIPVDTSELELKPQGRLTVTVVKANDLKNKEMIGKSDPYVVVYIRPLFKV KTKVIDNNLNPIWNEVFDLIAEDKETQSLILEVYDKDIGQDKRLGIAKLPLINLEAETEKELELRLLSSLDTLKVKDKKD KGTLTIKILYHQFDKEEQYAALEAEKRILEERKKLKEEGVIGSTMDALDGAASVVGSGVGMVGTGVAAGAGLVGSGIGAG AGLVGSGIGAGVGIVGSGLGAVGSGLSRAGKFMGRTITGQGVSRRSGSSTPVANFEENDGGAKPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 384 | 384 | 2.1E-221 | – | |
| ProSiteProfiles | 1 | 110 | 110 | 11.649 | ||
| PANTHER | 1 | 384 | 384 | 2.1E-221 | ||
| ProSiteProfiles | 112 | 208 | 97 | 16.332 | ||
| Gene3D | 120 | 279 | 160 | 6.3E-32 | ||
| SUPERFAMILY | 123 | 251 | 129 | 9.52E-29 | – | |
| Pfam | 125 | 221 | 97 | 5.8E-23 | ||
| SMART | 126 | 223 | 98 | 1.7E-22 | ||
| CDD | 127 | 220 | 94 | 4.95831E-30 | – | |
| PRINTS | 142 | 154 | 13 | 6.1E-6 | ||
| PRINTS | 167 | 180 | 14 | 6.1E-6 | ||
| PRINTS | 189 | 197 | 9 | 6.1E-6 | ||
| Coils | 252 | 279 | 28 | - | – | |
| TMHMM | 292 | 314 | 23 | - | – | |
| TMHMM | 324 | 346 | 23 | - | – | |
| MobiDBLite | 357 | 385 | 29 | - | – | |
| MobiDBLite | 359 | 375 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi1g1v0465600.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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