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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0467000 |
| Transcript ID | LotjaGi1g1v0467000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR-repeat protein; TAIR: AT3G48880.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M2Z5|FBL53_ARATH F-box/LRR-repeat protein At3g48880; TrEMBL-Plants: tr|A0A072VEM9|A0A072VEM9_MEDTR F-box/LRR plant protein; Found in the gene: LotjaGi1g1v0467000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:97622811..97623629) extracted from Lotus japonicus Gifu genome v1.2.
GTGATTTTAATCAATGTTACGTAACCTTATGACCAAACACCACATACCCACTTACTTTACTATGGTATTTTAAATTGTGT CCTATTTTATTTGTAGGACTCCAAATCTCCAACGACTAGTCTTTCCAGATTCAGGCCACCTATCAAAAGATGGAATCTAC AATGCAATGAGATCATGGAGAGGTCTTGTGTCAATAACTATTACCTCCATTGTCAACCGTCCTCACATGTTTTCAGCAAT TGGCAAATATTGCAAGAATCTCTCTGAATTGAAATTGACTTTCGACTTTGAACAACATCATGCTGATGCCTTGGTTGAGC ACATCCCAAATTTGATGGTCTTGAGTATCCGGTACGTATCAGTGGATATGAAAGCTTTGTGCCATGTACTCAAAAGTATG GAACGTTTGGTGTTGGTAAATATATGTCACAGTACCATTTACGATCTATCAGATTACTCCATTGAGCTTTATGATATTAA AAGTTTGAGGAAGCATTTGAGCATCTCCTGTCTAGAAAAGCTTATCTCTTGTCAAGTAAACGAGTGTTGCAGATGTCAGA GGCATAACTATGATCCAAGAAGGCATCTTGAGGATATTTGGCATAATGATGAAGTAAGGTGTTTTGCAATTGATTAGTTT TATGGAAGGCTTCATAGATTGAAGAACCTTTGTCTTGTTCAAATTACTTAATTCTCGTTTTTGTTTACTGAATAAGCGTC ATAAACATTTATTGGCTTTAAATTATGGATGATTTCGGCTTGCATGTACCGTACCATTTAATGGGTTAAAGATTTTATTA ATGTTATTGGTGATTTGAG
CDS sequence (LotjaGi1g1v0467000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATCATGGAGAGGTCTTGTGTCAATAACTATTACCTCCATTGTCAACCGTCCTCACATGTTTTCAGCAATTGGCAA ATATTGCAAGAATCTCTCTGAATTGAAATTGACTTTCGACTTTGAACAACATCATGCTGATGCCTTGGTTGAGCACATCC CAAATTTGATGGTCTTGAGTATCCGGTACGTATCAGTGGATATGAAAGCTTTGTGCCATGTACTCAAAAGTATGGAACGT TTGGTGTTGGTAAATATATGTCACAGTACCATTTACGATCTATCAGATTACTCCATTGAGCTTTATGATATTAAAAGTTT GAGGAAGCATTTGAGCATCTCCTGTCTAGAAAAGCTTATCTCTTGTCAAGTAAACGAGTGTTGCAGATGTCAGAGGCATA ACTATGATCCAAGAAGGCATCTTGAGGATATTTGGCATAATGATGAAGTAAGGTGTTTTGCAATTGATTAG
Protein sequence (LotjaGi1g1v0467000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSWRGLVSITITSIVNRPHMFSAIGKYCKNLSELKLTFDFEQHHADALVEHIPNLMVLSIRYVSVDMKALCHVLKSMER LVLVNICHSTIYDLSDYSIELYDIKSLRKHLSISCLEKLISCQVNECCRCQRHNYDPRRHLEDIWHNDEVRCFAID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 137 | 137 | 6.5E-39 | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 137 | 137 | 6.5E-39 | – | |
| Gene3D | 2 | 150 | 149 | 4.5E-7 | ||
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| SUPERFAMILY | 22 | 116 | 95 | 5.49E-5 | – | |
| Phobius | 25 | 156 | 132 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0467000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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