Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0472100 |
| Transcript ID | LotjaGi1g1v0472100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase 7 long form like; TAIR: AT1G32120.1 serine/threonine-protein phosphatase 7 long form-like protein; Swiss-Prot: sp|Q9LMT7|MAIN_ARATH Protein MAINTENANCE OF MERISTEMS; TrEMBL-Plants: tr|I1N0S4|I1N0S4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0472100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98257663..98259830) extracted from Lotus japonicus Gifu genome v1.2.
CACACATTGAAGAAGCTTCTTCACTTCCCTACACTCAATATTCACTCACAGTCACATCACATAGCATAACTTGCAACTGT TTTTCTTCTACTCCAAAAATGGATGAGGAGGAAGAAATCATCGAGGTTAGAGAAGAGTACATGGTTTCACCATCATCCAA TGAAAACCCAACTCAGAGAATAGCTTATTTTCTCAAACCCTGCAGCCAAAACTGCATTCAAGAGTCACCACATCCACATG ATTTTCTTCATTCCTTCCTCTCCAACCAGATAAATGCTATCACTGAAGTCAGATACAATGGTTGGCAAAAGCCACAAGAG GAATGGAAAATATGGGTCCAAAAGATGCAACTCAAGTATGAACATTTGTGGGTAAAAGCTGGCATAAACCATGCAATCCA AGCTTCTACGTATGAGTTCAACAGGAAGCATGAGTTGATTCTTGCCCTTGCTCAGCGATGGTGTTCCAAGACCAATACCT TCATCTTCCCTTGGGGAGAAGCAACCGTCACGTTGGAAGATTTGAAGGTTTGCTGGGGTTATTCTGTTATGGGAGTTCCT GTTTCTAGCCCTCTCGAGACGAGTGAGCAGAAGGAAGTAGAAGCAGAACAAATTGAGGCAAGAAGAATGTTTAATAGCAC AAAATCAAAAAAAGTGACTCATAGGCCATGGGTGATGCATTTTATGAAGAATGAAAGCAGAGTGGAACACGAGGCCTTCT TGATTTATTGGTTGTCAAGGTTTGTGTTTCCAAAGGTACATGAAACTATTTTGAAGAGTGTTTTTCCGATTGCGATACAT CTTGCTCGAGGGACCCGAGTAGCTCTTGCACCGGCTGTTTTAGCAAGCATTTATAGGGACTTGAGTTTGTTGAACAACAC CATCAACAACATTGGCACAACCATCACTTTGTGGGCACCTTTTCAGGTTGTGCAAATATGGGCTATGGAGAGGTTTCCAG CACTGCAGCGGTATCCACAAGCAGTTGAAGAACAAGTGCTATGGCGGTGGGCTAAGTGGGATGGAGTAAAAATGGTAAAA GATAAAAACTTGAAATCTGTATTGGATTCTGCTGGAGATTGTAACAGATTTTTATGGCGACCATACAACAATTCACCATC TCTAAAGCTTTATAATGAGAAGGAAATGTGGGAATGTGATAATCCTAATTTGGATTATGAATTGGAGTCATTTGGTCGTT GCTTGAGGGCGTGTAAATTGGTCGGTATGGGGTGTGTAGAGCAGTACTTGCCACATCGTGTTGCTTTACAATTTGGATTG GACCAGGACATTCCAGGTATGGTTTTAGATTGTAACAATGATCCTTGGATATGTTATAGCCAGCCTATAATGTATATGAA TTTGGAGAGTGCTTTATTTTCCTGCCAGTCTAATGTGACTTCTAGATACTATGATTGGTGGAGGCAATCAAAATCAGGCA ATGAAGGAGAGATCATGAAGTGTTTTGATCTTTGTCCTATAAGCATAAGCAGTTCAGAACATTTGTCACCAATTTCAAAT GGGCAGGTAAAGAGTGAAGGGTCCTTTGGCCCACCTCCTGGTTTTACTTCCAAGTTTGGAAGAGATCAAGCAGGGGACTT TGATAAAAATGATCAGTTGGGAGAAAGAAGAGACAAAGATGATAGCGAAGAAGCCAAAATGAAGAGTCCATTTTGTGATA TAAATGGTGCCATTGACATGGAAGGGGAAGGGGAAGGTGCAAGAGTTGGTTTAGGAGCAAAAGTGGTTGCTGAGCTTAAA GATGCAAAATTGAGGATTTCAAAGCTTGAAAAAGTGGTTGCTGAGCTTAAAGCAGCAAAATTTGGCCCAAAGGTTGAAAG AGGTGCAGACAAAGCAAAGCCATAGTGCTCCTTGGTTAGTAACAACAGATCCAGATCCTGTTTACCCACTGCAGATCAAC TTATTTCTAAGTAATAGTTCAATTGCTAACTTGCTTTGTATTGTGACCTGTTGTTTAGTAATAGTTCCTTTTTTCGTACA ATCTGCATTAGTGCCCTTCATTATACTTGCTATTATGCAGATCATGGGAATATCAAGTGTCTGAAGTTATTGATTCGGTT GTTTTTAAAAACATAATATAGAGTATCCCATTCTCTTTGTCTATTGATTACAATATTTTAAGGAACAAAGTACTGATGAA GAACTTGT
CDS sequence (LotjaGi1g1v0472100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAGGAGGAAGAAATCATCGAGGTTAGAGAAGAGTACATGGTTTCACCATCATCCAATGAAAACCCAACTCAGAG AATAGCTTATTTTCTCAAACCCTGCAGCCAAAACTGCATTCAAGAGTCACCACATCCACATGATTTTCTTCATTCCTTCC TCTCCAACCAGATAAATGCTATCACTGAAGTCAGATACAATGGTTGGCAAAAGCCACAAGAGGAATGGAAAATATGGGTC CAAAAGATGCAACTCAAGTATGAACATTTGTGGGTAAAAGCTGGCATAAACCATGCAATCCAAGCTTCTACGTATGAGTT CAACAGGAAGCATGAGTTGATTCTTGCCCTTGCTCAGCGATGGTGTTCCAAGACCAATACCTTCATCTTCCCTTGGGGAG AAGCAACCGTCACGTTGGAAGATTTGAAGGTTTGCTGGGGTTATTCTGTTATGGGAGTTCCTGTTTCTAGCCCTCTCGAG ACGAGTGAGCAGAAGGAAGTAGAAGCAGAACAAATTGAGGCAAGAAGAATGTTTAATAGCACAAAATCAAAAAAAGTGAC TCATAGGCCATGGGTGATGCATTTTATGAAGAATGAAAGCAGAGTGGAACACGAGGCCTTCTTGATTTATTGGTTGTCAA GGTTTGTGTTTCCAAAGGTACATGAAACTATTTTGAAGAGTGTTTTTCCGATTGCGATACATCTTGCTCGAGGGACCCGA GTAGCTCTTGCACCGGCTGTTTTAGCAAGCATTTATAGGGACTTGAGTTTGTTGAACAACACCATCAACAACATTGGCAC AACCATCACTTTGTGGGCACCTTTTCAGGTTGTGCAAATATGGGCTATGGAGAGGTTTCCAGCACTGCAGCGGTATCCAC AAGCAGTTGAAGAACAAGTGCTATGGCGGTGGGCTAAGTGGGATGGAGTAAAAATGGTAAAAGATAAAAACTTGAAATCT GTATTGGATTCTGCTGGAGATTGTAACAGATTTTTATGGCGACCATACAACAATTCACCATCTCTAAAGCTTTATAATGA GAAGGAAATGTGGGAATGTGATAATCCTAATTTGGATTATGAATTGGAGTCATTTGGTCGTTGCTTGAGGGCGTGTAAAT TGGTCGGTATGGGGTGTGTAGAGCAGTACTTGCCACATCGTGTTGCTTTACAATTTGGATTGGACCAGGACATTCCAGGT ATGGTTTTAGATTGTAACAATGATCCTTGGATATGTTATAGCCAGCCTATAATGTATATGAATTTGGAGAGTGCTTTATT TTCCTGCCAGTCTAATGTGACTTCTAGATACTATGATTGGTGGAGGCAATCAAAATCAGGCAATGAAGGAGAGATCATGA AGTGTTTTGATCTTTGTCCTATAAGCATAAGCAGTTCAGAACATTTGTCACCAATTTCAAATGGGCAGGTAAAGAGTGAA GGGTCCTTTGGCCCACCTCCTGGTTTTACTTCCAAGTTTGGAAGAGATCAAGCAGGGGACTTTGATAAAAATGATCAGTT GGGAGAAAGAAGAGACAAAGATGATAGCGAAGAAGCCAAAATGAAGAGTCCATTTTGTGATATAAATGGTGCCATTGACA TGGAAGGGGAAGGGGAAGGTGCAAGAGTTGGTTTAGGAGCAAAAGTGGTTGCTGAGCTTAAAGATGCAAAATTGAGGATT TCAAAGCTTGAAAAAGTGGTTGCTGAGCTTAAAGCAGCAAAATTTGGCCCAAAGGTTGAAAGAGGTGCAGACAAAGCAAA GCCATAG
Protein sequence (LotjaGi1g1v0472100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEEEEIIEVREEYMVSPSSNENPTQRIAYFLKPCSQNCIQESPHPHDFLHSFLSNQINAITEVRYNGWQKPQEEWKIWV QKMQLKYEHLWVKAGINHAIQASTYEFNRKHELILALAQRWCSKTNTFIFPWGEATVTLEDLKVCWGYSVMGVPVSSPLE TSEQKEVEAEQIEARRMFNSTKSKKVTHRPWVMHFMKNESRVEHEAFLIYWLSRFVFPKVHETILKSVFPIAIHLARGTR VALAPAVLASIYRDLSLLNNTINNIGTTITLWAPFQVVQIWAMERFPALQRYPQAVEEQVLWRWAKWDGVKMVKDKNLKS VLDSAGDCNRFLWRPYNNSPSLKLYNEKEMWECDNPNLDYELESFGRCLRACKLVGMGCVEQYLPHRVALQFGLDQDIPG MVLDCNNDPWICYSQPIMYMNLESALFSCQSNVTSRYYDWWRQSKSGNEGEIMKCFDLCPISISSSEHLSPISNGQVKSE GSFGPPPGFTSKFGRDQAGDFDKNDQLGERRDKDDSEEAKMKSPFCDINGAIDMEGEGEGARVGLGAKVVAELKDAKLRI SKLEKVVAELKAAKFGPKVERGADKAKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 504 | 494 | 1.2E-134 | – | |
| PANTHER | 11 | 504 | 494 | 1.2E-134 | – | |
| Pfam | 95 | 442 | 348 | 9.4E-106 | ||
| MobiDBLite | 470 | 524 | 55 | - | – | |
| MobiDBLite | 496 | 522 | 27 | - | – | |
| Coils | 553 | 573 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0472100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…