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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0481400 |
| Transcript ID | LotjaGi1g1v0481400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT4G01250.1 WRKY family transcription factor; Swiss-Prot: sp|O04609|WRK22_ARATH WRKY transcription factor 22; TrEMBL-Plants: tr|A0A0R4J5X0|A0A0R4J5X0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99467641..99469779) extracted from Lotus japonicus Gifu genome v1.2.
AAACTCACTTATAAACTTTATTCTAGAAGGTGAATTTTGTAAAAAGAAAAGTAATGGAATAAAAAGTGGATCCAATGCAA TGAGCATAGAGATGCCAAACCACAATCTCAAAAAAAAAATTACTTTTCTTTTCTCTCTCTCAATCTCTCTGAGTAGACTT TGAGAAAATCGCCCACTTTTTTCTCTCTCTATATATACAAGTCCATCCCCACTCAGACCACCTTATCATCTCTCTCTCTC TCTCTCTCCCTTTACTTCACCAAAAGTCAGCGCCTTCTTTTGTCTTTTTCTGCACCCATTGCAGAGTTTGTCTCCTCTTC ATGGAGGAAGATTGGGATCTCCATGCGGTGGTTAGAGGCTGTACCTCCACCGCCACCACCACCACCACCACCGCATCAGC ACCAGCAGCATCATCCTCTGTTTCCTCCTCCTCTGTTTTCACCACTTGTTGCTTGCAGAAGCCTGAACTTTCTTCTTCAT CTGGGTTCTCTATTCTTGAAGGTGAACAGGTTCTGTCTTTTCCTGCAGTAGCATACCCCTTTGAATCAAGAGACTCCATT GAAGAGTTGCATGAGCTTTGCAAGCCTTTCTTCTCCAAATCACTCCAAGCTTCTTCTCCTCTGTCCTCATTCTCTTTCTC CTCTTCTGCTGCACCCAAATCACAAGACAAACAGCAACAGAGGAGTAAGCAACCACACCATGGTGGTTCTGGTTCTGGTT CTGGTTCTGCCACCACCCCACGATCTAAAAGAAGGTAATTTGAAAATTAGAGAAAAAATTGAACCTGGGTTTGATCTCAA AATGAGATCTTGAAATGACCCAATTCATAAAAATCATGTCTTTGTTTTATACTTTGTGTGTCTGATTCTGAAATGCATTG TTTTTTTCCTTTGCAGAAAGACCCAGCTGAAGAAAGTTTGTCAAGTACCAGTTGAGAATCTTGCTTCAGATGTTTGGGCA TGGAGGAAATATGGACAGAAACCCATTAAAGGGTCACAATATCCAAGGTGAGAAAAACTACAAGATTCTCACTTGCAAAA AAAAAAAACAGAGCAAAAAACAGAGGAAAATCAAGGGTTTGAACTTTGAATTGAAGTTTTGTGATGATTTTGTTGAATTG AGGTGTGTTTGGTTTATGATTTGCAGGGGATACTACAGATGTAGCAGCTCAAAAGGGTGTTTAGCAAGGAAACAAGTTGA GAGGAACAGATCAGACCCAACAATGTTCATTGTCACCTACACAGCAGAGCACAACCACCCTGCTCCTACTCACAGGAACT CTCTTGCTGGTTCCACCCGCCAGAAGCCTTTGACACCGGAAACTGCCGCCGCCGCCGGAGACTCTGACAAGGTAGTGACA AAACCTACTTCTCCGGCTACCTCAGGGGGAGAGGCAGAGGAAGGGGTTCCATCTCAGGGAGAAAAGTCAGAGAGCAGAGA AGATTTGATGATGGATGATGAGGAAGGAGAAGATGAATTTTTTGGGTTATCTGATATGGTGCTAACAGATGATTTCTTTG AGAGTTTAGATGATGAACTGAGTCAAATTACTGGCTCCTCTGATCCCTTTTCTGCTATTGCAATTCCTACTTGGGTAGCA GCCAATGGTGCTGGTGGAAGCTGAGTAGTTGGGAATTACTCATCACACAATTCACAAGTCATGACATGACAACTGTTTCA TTCTTCTTTTTGTTGGAACATTGTGAGGAATCTTTACTAACTAAATTGCTTTGTGAAGGGGAAGAAAATTTCTTTCCTTA GTATAGTAGTGACAAGTTAGGTAGATTAAGCATTTATATCTCTTGTTAGTCTTGTTAAAATTAGTGATTATTATGTAGGC ATTACAGTCTTATACCTCTTTTAATGTTCAATTAATTTATTGCTGCATCTTTTATGCTTCTTGCTTCATGAATTCATGTG GTGTGATTGAGTTTACTGTATTTAATGTTTGGTTGTCATGTAAATTAGCAGCATGTTTAGAAATTATTTTATAATTTGTT CCAAACTCAAAAGTCAAATCTAGGGAGAAGTAACTCAAATTAGCTTTTTGTGGGGATTTTTACTTTCACATTTGATGAAA AGGAAAGTGTTGAACAATATATAAGTGAAATGACATATTTACTCAATATTATGAAGTTT
CDS sequence (LotjaGi1g1v0481400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAGATTGGGATCTCCATGCGGTGGTTAGAGGCTGTACCTCCACCGCCACCACCACCACCACCACCGCATCAGC ACCAGCAGCATCATCCTCTGTTTCCTCCTCCTCTGTTTTCACCACTTGTTGCTTGCAGAAGCCTGAACTTTCTTCTTCAT CTGGGTTCTCTATTCTTGAAGGTGAACAGGTTCTGTCTTTTCCTGCAGTAGCATACCCCTTTGAATCAAGAGACTCCATT GAAGAGTTGCATGAGCTTTGCAAGCCTTTCTTCTCCAAATCACTCCAAGCTTCTTCTCCTCTGTCCTCATTCTCTTTCTC CTCTTCTGCTGCACCCAAATCACAAGACAAACAGCAACAGAGGAGTAAGCAACCACACCATGGTGGTTCTGGTTCTGGTT CTGGTTCTGCCACCACCCCACGATCTAAAAGAAGAAAGACCCAGCTGAAGAAAGTTTGTCAAGTACCAGTTGAGAATCTT GCTTCAGATGTTTGGGCATGGAGGAAATATGGACAGAAACCCATTAAAGGGTCACAATATCCAAGGGGATACTACAGATG TAGCAGCTCAAAAGGGTGTTTAGCAAGGAAACAAGTTGAGAGGAACAGATCAGACCCAACAATGTTCATTGTCACCTACA CAGCAGAGCACAACCACCCTGCTCCTACTCACAGGAACTCTCTTGCTGGTTCCACCCGCCAGAAGCCTTTGACACCGGAA ACTGCCGCCGCCGCCGGAGACTCTGACAAGGTAGTGACAAAACCTACTTCTCCGGCTACCTCAGGGGGAGAGGCAGAGGA AGGGGTTCCATCTCAGGGAGAAAAGTCAGAGAGCAGAGAAGATTTGATGATGGATGATGAGGAAGGAGAAGATGAATTTT TTGGGTTATCTGATATGGTGCTAACAGATGATTTCTTTGAGAGTTTAGATGATGAACTGAGTCAAATTACTGGCTCCTCT GATCCCTTTTCTGCTATTGCAATTCCTACTTGGGTAGCAGCCAATGGTGCTGGTGGAAGCTGA
Protein sequence (LotjaGi1g1v0481400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEDWDLHAVVRGCTSTATTTTTTASAPAASSSVSSSSVFTTCCLQKPELSSSSGFSILEGEQVLSFPAVAYPFESRDSI EELHELCKPFFSKSLQASSPLSSFSFSSSAAPKSQDKQQQRSKQPHHGGSGSGSGSATTPRSKRRKTQLKKVCQVPVENL ASDVWAWRKYGQKPIKGSQYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLTPE TAAAAGDSDKVVTKPTSPATSGGEAEEGVPSQGEKSESREDLMMDDEEGEDEFFGLSDMVLTDDFFESLDDELSQITGSS DPFSAIAIPTWVAANGAGGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 318 | 318 | 5.8E-103 | – | |
| PANTHER | 1 | 318 | 318 | 5.8E-103 | – | |
| MobiDBLite | 106 | 151 | 46 | - | – | |
| MobiDBLite | 106 | 142 | 37 | - | – | |
| Gene3D | 143 | 223 | 81 | 7.1E-28 | ||
| ProSiteProfiles | 156 | 222 | 67 | 33.729 | ||
| SUPERFAMILY | 159 | 222 | 64 | 8.76E-26 | ||
| SMART | 161 | 221 | 61 | 6.9E-36 | ||
| Pfam | 163 | 220 | 58 | 1.8E-25 | ||
| MobiDBLite | 217 | 290 | 74 | - | – | |
| MobiDBLite | 219 | 238 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0481400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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