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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0481700 |
| Transcript ID | LotjaGi1g1v0481700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT5G41570.1 WRKY DNA-binding protein 24; Swiss-Prot: sp|Q9FFS3|WRK24_ARATH Probable WRKY transcription factor 24; TrEMBL-Plants: tr|G7L6N9|G7L6N9_MEDTR WRKY family transcription factor; Found in the gene: LotjaGi1g1v0481700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99512095..99514995) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTAATGAAGGTAAACAGTAACATTATTTCAACGCGTTTGAGATAAAAGTAGAGGGCAGAATGTATATACTATATACT ATATCCTGAACAATGATATATTCTAATATTAATGGTATAGGAATTAATGGTTCGTTCAGTATCTTCTATCTTGCACCCAA ACATAAAACTCAACTAAATTCAACTACTTTCAGCTCACCTGTCCTATAAGATCATACAAAGGAAACGTGCCCCATATGCA ATTCACATTTCGTTATCATCAATGCATGCTCTCACTACACACATACACACACACATGTGTCATGTGTGTCTATGTGAATA ATTAAGGTTGCCAAACTCTTCTACCCTCCACCATCTTTCTCCTTTATAAAATTCAACCCTACAACATCCTCATTTTCTCT CTTCAAACTCCATTGACCATTAACTCCATTATTCTCATCATCACAACATGGGTGACCCAATGGAGAGCCAAAACCCACCA CCACCACCATTATTACTATTACCACCACCCCAAAACAACACTTTTACTACTACGACTAATCCTTTTCTCTTCAATATGTC CCCTCAAGATCATAATCAAGGTTTTTCTGACATTGATTGGGGCAACCTTTTTTGTGGCCAAAGCAGTTCCTCCTTGTTGC TTGATGGGGATTATCATGCTAATAAGGAAACTACGGGGATCGACCCGTGCGGTTCTTCGTCCGATTTTTTGATGATGAAT GAAAGTGGAGGTGCTCAAGATTATCATCATGAGGGTGAGAAGGGAGGGAAGGAGAAAAGGATCAAAGTTGGGAGGGTGAA GAAGACGACAAAGGTCCCGAGGTTTGCGTTTCAGACGAGAAGCGTTGATGATATTTTGGATGATGGGTATCGCTGGAGGA AGTATGGGCAGAAAGCTGTGAAGAATAGCACGTATCCCAGGTATGTGTGTGCAATGATGGGTTGATCGTGTGGTTTCCTT TTATGTTCTGCATATATTCATGCATATGCACTTGGACTTGGTGATGATGTAATTTTATATGGAACATGGATATATAATGC CTATGGAGCTCACAAAATAATGATAGCACTCATACACTTTAACTTGGATTGGGAAAACACATAATGATACTACAACTAGG AAGAAAATGATACTCGGTGTCTTGATTGAAGGGATCATCAAGCCTTACTACGATGAAATGCAGGGAATGACATATCTATG TACAAAAAAGTGGCAATTCCATTCGGGTTGCTTATATTATCATGAAACCTCCTGCTTCTTTGTGTTTTTTAGGGTCATTG CCATAAGCTGGAGCCTCTAAATGCTTACATAACCTTAAGGAAAAAGATGCTTGTCAAAAAAATAAACCTTAGGAAAAAGA TTACATTCATGAAAAGTTGTCATTAGGACATACAGGTTTGTGGTGGTTACAAACCTGCGTTGTTCAACTATTTTTTCAAC GCTTGTTAAACTATGGTGGATGTATGCGCAAGTACGTTAAACAACTTAATTAAAATGCTTATAGCGATATATATATATAT ATATATATATATATATATAAGAGTTTATATATAAACACGAATTCATAAATTAGTTTGAGAAGTTTATTCAAATATACCTA AAATAAGTTACAGGTAGATATATAAAAGCGTTTATCCGTGAACGTATCTGAGTAGCATATAAAAATAAGTTCAAAACAAA CTTAAAGGTAAATCATAAGTTTACTTAAGCTCTTTCAAACACCTATATAAAACGTTTATGCAATAAGATATAAGCTCAAA TTAGCACTTTTAAACTCACTTAAAACTTTGTCATTGAATATTTCATTATATGAATTACACATTTAATTAGATGATTTTTC AAAACAAATATTACAAAACTAAGGGATATTATTTGATATTTTATAAAGAGTTTAATGGTTGTGTACTACCGGTGTATAAC ATTTTTACGCAGACGTCCAATATCTAAATGATACTTATTCAAATGCATTTATGATCCTTTTTATTTTAATAAAAAATTAT TTTCTAATTTGGCAACCTATCATTGAATGTCTGTGTAAAAAATGTTTACACTGACGATGCATTACCATTAAACTCTTTTA TAAAAGTTTCGGAGAAACTTAATTAGTGTATATATAAGTAGAAAAAAAAATTAGAACCAACTTTTATATGAAAACATACA ACAAAATTAACATGAGATCTTTGAATTAATTTGTATATTTGGTTAAATTTATGAGATAAGTACTGAATTTTTCTTTTTTC ACATCTTGCATTGCTAAAATGATTAAAGAAGCTACTACCGTTGCACCCATCACACATGCAATGTGAAGAAACAAGTGCAA AGGCTATCCAAAGACACAAGCATTGTGGTGACAACTTACGAGGGAATTCACAACCATCCATGCGAGAAGCTCATGGAAAC CCTAACCCCTCTCCTCAAGCAAATACAGTTCCTTGCTAGCTTGTAATGTCATATTGCTTTTCTGCTATAATGCACATTAC ATACATATATATATAACACAGATACATAAATTAACTTATTTAAATGCTCTTTGCTTGTCTATGTCATTGTATACTCTATA TCTCCACTATATATATTGGTGTGTTTTATGTTGGTGTGTATGTGAATTTGACTTTGTATGTGAACCAAGATCATGTCCAT ATATGGTCATTTGTGTGTGTAATAAAATCCCTGTACGTACAATTTGTATACATGTGTCTGTAATGTTTTGATTTCCAGCA TTGTTTTCTTTAGATTTCTTGATTTGATTTTTTCTTGTTTATCGGAAAGATAAATTATAGCCCTCTAGAAATTGATCTAT GGATCTCACCCTCTCAACCTCATACGTCCACCAGCTCTTAGCACTTGAGTTAGCATTCAGGATCAGATTTCTTGATCCAA TTGTGCAAGCTTTGCTTCAAC
CDS sequence (LotjaGi1g1v0481700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGACCCAATGGAGAGCCAAAACCCACCACCACCACCATTATTACTATTACCACCACCCCAAAACAACACTTTTAC TACTACGACTAATCCTTTTCTCTTCAATATGTCCCCTCAAGATCATAATCAAGGTTTTTCTGACATTGATTGGGGCAACC TTTTTTGTGGCCAAAGCAGTTCCTCCTTGTTGCTTGATGGGGATTATCATGCTAATAAGGAAACTACGGGGATCGACCCG TGCGGTTCTTCGTCCGATTTTTTGATGATGAATGAAAGTGGAGGTGCTCAAGATTATCATCATGAGGGTGAGAAGGGAGG GAAGGAGAAAAGGATCAAAGTTGGGAGGGTGAAGAAGACGACAAAGGTCCCGAGGTTTGCGTTTCAGACGAGAAGCGTTG ATGATATTTTGGATGATGGGTATCGCTGGAGGAAGTATGGGCAGAAAGCTGTGAAGAATAGCACGTATCCCAGAAGCTAC TACCGTTGCACCCATCACACATGCAATGTGAAGAAACAAGTGCAAAGGCTATCCAAAGACACAAGCATTGTGGTGACAAC TTACGAGGGAATTCACAACCATCCATGCGAGAAGCTCATGGAAACCCTAACCCCTCTCCTCAAGCAAATACAGTTCCTTG CTAGCTTGTAA
Protein sequence (LotjaGi1g1v0481700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDPMESQNPPPPPLLLLPPPQNNTFTTTTNPFLFNMSPQDHNQGFSDIDWGNLFCGQSSSSLLLDGDYHANKETTGIDP CGSSSDFLMMNESGGAQDYHHEGEKGGKEKRIKVGRVKKTTKVPRFAFQTRSVDDILDDGYRWRKYGQKAVKNSTYPRSY YRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLASL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 36 | 215 | 180 | 3.7E-84 | – | |
| PANTHER | 36 | 215 | 180 | 3.7E-84 | – | |
| Gene3D | 122 | 197 | 76 | 5.9E-32 | ||
| SUPERFAMILY | 131 | 196 | 66 | 3.14E-28 | ||
| ProSiteProfiles | 132 | 197 | 66 | 28.725 | ||
| SMART | 137 | 196 | 60 | 1.2E-37 | ||
| Pfam | 138 | 195 | 58 | 1.5E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0481700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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