Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0485300 |
| Transcript ID | LotjaGi1g1v0485300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT4G26640.2 WRKY family transcription factor family protein; Swiss-Prot: sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20; TrEMBL-Plants: tr|K7MUG9|K7MUG9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0485300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99856753..99861329) extracted from Lotus japonicus Gifu genome v1.2.
GTTATATATATGGGGTGTGTGTGATGAGAGGAGAGGTCCCATTTTTCATTTTTCATTTTTCATGTGTAGTGCGTGGGAAA CAAAGATTGCATTGCACAACGTGATTTCAAAGCATCACCATCATTGGTTTCAGCTCCACTCTTCTGGAGCTGAACCCCAC CATCATCACAATTCAGGTTACACCATTACACCCTCATATCCATTTTTCCAATTTCAATTCAATTTCTGATTGTTCTCATG TTTCATTTTTCATTCATTTCTCACCATGATCATGTTGTGATTCTTGTGTTGTGCCTGAACAGACCACAGGACATGATGGT AGGACTCAACAACAACAACAACAACAACAGCAACACCAACGTGAACAAAAGTGACAACAATAACAACAACAACGACAACA ACAATTGTGATGGTGAAATCTTTGTCTCTGATGACAAAGGTGGAGACTTTCCGGGGTTTCCAGGAAAACGAAGCATCGCT GAGAGAAGGGGTTTCAATACCAATGCACCAAGGATCAACACTGCACTTTTTCGCACTGCGACTGTAGCCGCAACTGCAAC AACCCCTTTGGTTTCTCCTTCTGCTCGATCACCTCGTATCACAATCCCTCCTGGGATTAGTCCTGCTGCATTGCTTGATT CCCCAATCTTGCTTCTCAATTCTCAGGTATCTATGATGACCCTTTTGATTCTTCTTTCTCAATTTCAGAAAAAAGATTGT TTTTTTGTTTTGTTTTTGTGATTATTAATTTGTTATGGTTATTATTTGTGATGTGTTTTAGCCAATGCCATCTCCCACTA CTGGGAGTTTCTTCATGCTGTCACCTTTCCCTCATGAAGAATCAATGGCCACTGCTGTTGCACTTGGACAAGGGAATATG GATGTGTCCTCTGCCTCTGATGCTGTTGCCTCCTCTGAATTCAAGGCTCATGCCAATTTGGATCCTAATTCTTTACCCCC TTACCCTGCTTCACTGAATCAGGTACCTTTCTTTGTTGCTGTGATTGTTATTATTATTAAAGGGCAATCTGAAAGGCTAA TACCATAGAAGTCCTAATTGTGAGTGTAATGTATGGAGTCTTGTCTTGTATTTCTGGTTAATTCCATGATTTTAACCCAT CACCTCTTTGGAGTTTTGTGTCAAGGTTCCTCTTCTGTTTTTATTAATCGTAATCAAAACAAAATTGCAATGGGTGTTGG GTTGTGTTTTTTAATACAATGGTGGTAGTGATATCATATCTGAATCTATGGCTTCATGCAAACTGATCAGACAAAAGCCT GACAATTCACTCTAAGGTTGAGTGTAACCCTTGTAGTGCATTACTGGGTGGTGTCATCCACTGCTGGTACCTGTGAAGAC ACTTAGACACCCAAGTTACTGAGTGAATATAAACTGAGTAGGGGATTAGATGAGATCTATTCTTGAATTGTTTGATACAT GGTCTGATAGAAAAGGGGGGTGGGGGGTGAATTGTCCTGTCATCCGAGTCTAAGTCGAATCTTGGTCTAAGTGTATGCCT AAGTGGTATGTCGTCCCAGGTGTAAGGGCCAGCATCCCACACTAGAACACAAATCATTCAAACAGCTTATCACTAACACT TCTGAGTCTCAATTAGATGTGGTTGATATGTGAAGAGTAGGGAGCAGAAGTTTGTGTAGTTAAGCAATTTGCTGACAATC AACTTGAAACATTTAAAAGTGATGGCGGTAATACCAATACCAATTTTAAACAAATGTCTAATAGGGAATCTGTCTAATTC TATTTGTTAACTCATCCTACAAGCTCTATATTTTTCTAAGATATTATCCAATGTGAAAGCTTCCTAAGTAGAATTTTTCT AAAATACATGTGTAATTTGGTGACATTGAACTGATTAGGTTCCTAGTAACTGCCACATGATGAAGGAAGGAAATCGGGGC AGCCAACTACTTGTTCAAGTTCAACCACCTTTAAATTTTCCATTCCCAGAAGATTTTCCGAAGGGCTATCCTGCAATAAA TGGCGAGGTCCATTCCTACAATGATGTGAGCATGGTGAATGATAATGCCAATCATGTTGAGATGTCAGTCTCTCGTTCTG AGGAAGCTAGTGATGAAAGCACTCTGCCTGAAAATGCTATTGATGGCGAGGATACCGGACAGCAACTTGTTGTAGAAGAA CAGAAAGAGACATCCCATGCGACCGGAGTCGTAAGGACCTCAGAAGATGGCTATAATTGGAGGAAATATGGACAAAAGCA GGTAAAAGGCAGTGAATATCCCAGGAGCTACTATAAATGTACTCAACCTAATTGTCAGGTCAAGAAAAAGGTTGAAAGAT CCCATGATGGCCAAATAACTGAAATTATTTACAAGGGTGCTCATAACCATCCGAAACCACATTCTAGCCGTCGAACATCA GCACTTTCAAATGATGAGATTTCAGAAATTGCTGAAGCTGGTGAAACCTGTGTTAAAGTTGACTGTGATTCAGTCTGGGG AAATATTCACTCTGGAATGAGAGATACAAAGCACAGGTTGGCATGGAAGGCTGATGGTCAGGAAAGGACATCCTCAGCTT CTGCTATGACTGAGCTCGCAGATCCAATATCAACGAAGAGAGCTAAACCTGAATCGGAGGACACTCCAGAGTTTTCTTCT ACACATGCTAGTCATGGTGGTGATGCAGATGGAGCCACTCAAGCAGTCATGTCACTTGAAGATGATGCTGAATCAGAGTC CAAAAGAAGGTTTTATACTCTATCTGTGTGTTTCCTCATGTTGACATTGGCAATAACAAATAGAAAGACAGCCTACATGT TTCTGAATTGATTTTCTATTGCAGGAAGAAGGAAAGCTACACTGTTGAAGCTATGCCTCCCAGGGCTGTTCGTGAGCCTC GAGTTGTAGTCCAAATTGAGAGTGAAATAGACATACTTGACGATGGTTATCGCTGGCGGAAGTATGGACAGAAAGTTGTC AAAGGAAATCCAAACCCAAGGTGACATTTCCTTTCTTTGTGCACTTGCAAGTCTTTATTTTTGTGTACATGAATGAAATA TACTTCTCATGTGTTGTTTCTTTCTTTAACAAAAGAGTATATTACAATTTTAGGGAACTGTGGTCTCAAAAGAAGTTCTG AGTATTTCCTTGAAGTTTTATTAGATTTAACTAGGTTTAATTAGAACATTTACATTTTTCTGTTTCTTTTTTGCTGCTCT TTTTGGTGGATAGACAATTTTCACTCTTAAGTTGACAAGAATTGAGATTGGTTGATATTGTTTATCATTCTATTATACTT TTCTGAACTTGCTCATTGTAAATCGGAGCTTGTTCATTTTTTAACTACAGATTGTGTTAATTAATTCTTTATATTTTTTC CCACATTTAAGGTTTTTCACATTAGGGCTATGCTTTTAACTGTATCAAGCTGTTATGATATCTGTAGCTTTTTTCATACA TTGCTTTCACATGTGTTTATAAGCTGATATGAATTTAACTTTTTCCAATGGATATTTTCTAGGAGCTACTACAAATGCAC AAGTGCTGGATGTCCTGTAAGGAAACATGTGGAAAGGGCTTCCCATAATCTGAAATATGTTATCACTACTTATGAGGGAA AACACAATCATGAAGTGCCTACTGCTAGAAACAACAATCAGATAAGCTCAAATGATGGTGGTGGTGCTAATGGGCAAGCA GGTCTTACATTACATGGGAGTGCCAGTATCCCAAAGCCAGAACCTCATCAAACTCTAGCACCTCATTTTGATAGAAAACC TGATTTTAGCAATGAGTTTCTCAGGCAAGGTTTGATTGGAAGTTTGGGTAATGACCTGAAGTTTGGACCTTCCTCCATGA GCCAAATGAAGTACTCTTCCTTGAGTAATACCATGCCTTATGGCTCCTATGGACTGAATCCTGATCGTTGTGCCACCCCT GCTGGATCTATGGCCGCAATGTTCCCTGATTTTCCAATGCCGCTACCAATGAATCTTCCCTCATCTGGAAGTTTTCCTCT TGCTGGAATTAACTTTAACCGCATGAAACCGATGGGTCATGTCCAGTCTTTCCTTTCAGGGCAGCAGGTGAAGGAGATTG ATTCAGGGTTCCTGAAGCCTAAACAGGAGCAGAAGGATGATACTATGTACACCACATGCATACCCTCTCTTGATCATGCA AATGCTTCTCTCAATCCGTCAACATCACCATCCATTTATCAGCGCGTCATGCAGAATTTCCCTTGATAATCTTGTTCTTG CAGCAAGTAGCAGCAGCAGCTTCTGTTTGTTATTCCCCAGTATTTGAAGGCCTTTTGTCCTATCATTGATATTTCAGTTT TTAGAAATATTTTTTTCAAACAAACTCCGGTGTCCTTATTTATACAAGTTGCATACCAATATTTGTTAGGTAAATTTCTT TGGTCCTATCATTGTTGTTTCGAGGTTCTCATGTATGATGTATCATCTATTGAGACAATCAAACTATGGCGTTTTTTTGG CATACCAATAGTTGTAACTTGTAACTAGTTCTTGGTAGAGTGGTTTAAGTAATAAAATATATGACTCTTCTGTGGAATGT TTTCTTTTTTTCTTTTT
CDS sequence (LotjaGi1g1v0485300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGTAGGACTCAACAACAACAACAACAACAACAGCAACACCAACGTGAACAAAAGTGACAACAATAACAACAACAA CGACAACAACAATTGTGATGGTGAAATCTTTGTCTCTGATGACAAAGGTGGAGACTTTCCGGGGTTTCCAGGAAAACGAA GCATCGCTGAGAGAAGGGGTTTCAATACCAATGCACCAAGGATCAACACTGCACTTTTTCGCACTGCGACTGTAGCCGCA ACTGCAACAACCCCTTTGGTTTCTCCTTCTGCTCGATCACCTCGTATCACAATCCCTCCTGGGATTAGTCCTGCTGCATT GCTTGATTCCCCAATCTTGCTTCTCAATTCTCAGCCAATGCCATCTCCCACTACTGGGAGTTTCTTCATGCTGTCACCTT TCCCTCATGAAGAATCAATGGCCACTGCTGTTGCACTTGGACAAGGGAATATGGATGTGTCCTCTGCCTCTGATGCTGTT GCCTCCTCTGAATTCAAGGCTCATGCCAATTTGGATCCTAATTCTTTACCCCCTTACCCTGCTTCACTGAATCAGGTTCC TAGTAACTGCCACATGATGAAGGAAGGAAATCGGGGCAGCCAACTACTTGTTCAAGTTCAACCACCTTTAAATTTTCCAT TCCCAGAAGATTTTCCGAAGGGCTATCCTGCAATAAATGGCGAGGTCCATTCCTACAATGATGTGAGCATGGTGAATGAT AATGCCAATCATGTTGAGATGTCAGTCTCTCGTTCTGAGGAAGCTAGTGATGAAAGCACTCTGCCTGAAAATGCTATTGA TGGCGAGGATACCGGACAGCAACTTGTTGTAGAAGAACAGAAAGAGACATCCCATGCGACCGGAGTCGTAAGGACCTCAG AAGATGGCTATAATTGGAGGAAATATGGACAAAAGCAGGTAAAAGGCAGTGAATATCCCAGGAGCTACTATAAATGTACT CAACCTAATTGTCAGGTCAAGAAAAAGGTTGAAAGATCCCATGATGGCCAAATAACTGAAATTATTTACAAGGGTGCTCA TAACCATCCGAAACCACATTCTAGCCGTCGAACATCAGCACTTTCAAATGATGAGATTTCAGAAATTGCTGAAGCTGGTG AAACCTGTGTTAAAGTTGACTGTGATTCAGTCTGGGGAAATATTCACTCTGGAATGAGAGATACAAAGCACAGGTTGGCA TGGAAGGCTGATGGTCAGGAAAGGACATCCTCAGCTTCTGCTATGACTGAGCTCGCAGATCCAATATCAACGAAGAGAGC TAAACCTGAATCGGAGGACACTCCAGAGTTTTCTTCTACACATGCTAGTCATGGTGGTGATGCAGATGGAGCCACTCAAG CAGTCATGTCACTTGAAGATGATGCTGAATCAGAGTCCAAAAGAAGGAAGAAGGAAAGCTACACTGTTGAAGCTATGCCT CCCAGGGCTGTTCGTGAGCCTCGAGTTGTAGTCCAAATTGAGAGTGAAATAGACATACTTGACGATGGTTATCGCTGGCG GAAGTATGGACAGAAAGTTGTCAAAGGAAATCCAAACCCAAGGAGCTACTACAAATGCACAAGTGCTGGATGTCCTGTAA GGAAACATGTGGAAAGGGCTTCCCATAATCTGAAATATGTTATCACTACTTATGAGGGAAAACACAATCATGAAGTGCCT ACTGCTAGAAACAACAATCAGATAAGCTCAAATGATGGTGGTGGTGCTAATGGGCAAGCAGGTCTTACATTACATGGGAG TGCCAGTATCCCAAAGCCAGAACCTCATCAAACTCTAGCACCTCATTTTGATAGAAAACCTGATTTTAGCAATGAGTTTC TCAGGCAAGGTTTGATTGGAAGTTTGGGTAATGACCTGAAGTTTGGACCTTCCTCCATGAGCCAAATGAAGTACTCTTCC TTGAGTAATACCATGCCTTATGGCTCCTATGGACTGAATCCTGATCGTTGTGCCACCCCTGCTGGATCTATGGCCGCAAT GTTCCCTGATTTTCCAATGCCGCTACCAATGAATCTTCCCTCATCTGGAAGTTTTCCTCTTGCTGGAATTAACTTTAACC GCATGAAACCGATGGGTCATGTCCAGTCTTTCCTTTCAGGGCAGCAGGTGAAGGAGATTGATTCAGGGTTCCTGAAGCCT AAACAGGAGCAGAAGGATGATACTATGTACACCACATGCATACCCTCTCTTGATCATGCAAATGCTTCTCTCAATCCGTC AACATCACCATCCATTTATCAGCGCGTCATGCAGAATTTCCCTTGA
Protein sequence (LotjaGi1g1v0485300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMVGLNNNNNNNSNTNVNKSDNNNNNNDNNNCDGEIFVSDDKGGDFPGFPGKRSIAERRGFNTNAPRINTALFRTATVAA TATTPLVSPSARSPRITIPPGISPAALLDSPILLLNSQPMPSPTTGSFFMLSPFPHEESMATAVALGQGNMDVSSASDAV ASSEFKAHANLDPNSLPPYPASLNQVPSNCHMMKEGNRGSQLLVQVQPPLNFPFPEDFPKGYPAINGEVHSYNDVSMVND NANHVEMSVSRSEEASDESTLPENAIDGEDTGQQLVVEEQKETSHATGVVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCT QPNCQVKKKVERSHDGQITEIIYKGAHNHPKPHSSRRTSALSNDEISEIAEAGETCVKVDCDSVWGNIHSGMRDTKHRLA WKADGQERTSSASAMTELADPISTKRAKPESEDTPEFSSTHASHGGDADGATQAVMSLEDDAESESKRRKKESYTVEAMP PRAVREPRVVVQIESEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERASHNLKYVITTYEGKHNHEVP TARNNNQISSNDGGGANGQAGLTLHGSASIPKPEPHQTLAPHFDRKPDFSNEFLRQGLIGSLGNDLKFGPSSMSQMKYSS LSNTMPYGSYGLNPDRCATPAGSMAAMFPDFPMPLPMNLPSSGSFPLAGINFNRMKPMGHVQSFLSGQQVKEIDSGFLKP KQEQKDDTMYTTCIPSLDHANASLNPSTSPSIYQRVMQNFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| MobiDBLite | 1 | 38 | 38 | - | – | |
| PANTHER | 48 | 734 | 687 | 1.7E-243 | – | |
| PANTHER | 48 | 734 | 687 | 1.7E-243 | – | |
| Gene3D | 278 | 353 | 76 | 2.5E-29 | ||
| ProSiteProfiles | 288 | 352 | 65 | 24.225 | ||
| SUPERFAMILY | 291 | 352 | 62 | 3.14E-25 | ||
| SMART | 293 | 351 | 59 | 1.9E-36 | ||
| Pfam | 294 | 350 | 57 | 2.2E-25 | ||
| MobiDBLite | 400 | 450 | 51 | - | – | |
| MobiDBLite | 423 | 437 | 15 | - | – | |
| MobiDBLite | 457 | 476 | 20 | - | – | |
| MobiDBLite | 460 | 476 | 17 | - | – | |
| Gene3D | 486 | 561 | 76 | 1.5E-33 | ||
| SUPERFAMILY | 493 | 560 | 68 | 2.35E-28 | ||
| ProSiteProfiles | 495 | 560 | 66 | 37.769 | ||
| SMART | 500 | 559 | 60 | 1.1E-37 | ||
| Pfam | 501 | 558 | 58 | 1.0E-24 | ||
| MobiDBLite | 557 | 604 | 48 | - | – | |
| MobiDBLite | 560 | 577 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0485300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…