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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0485400 |
| Transcript ID | LotjaGi1g1v0485400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Seipin; TAIR: AT5G16460.1 Putative adipose-regulatory protein (Seipin); Swiss-Prot: sp|Q9FFD9|SEI1_ARATH Seipin-1; TrEMBL-Plants: tr|G7KRI4|G7KRI4_MEDTR Adipose-regulatory protein (Seipin), putative; Found in the gene: LotjaGi1g1v0485400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99865494..99868128) extracted from Lotus japonicus Gifu genome v1.2.
CACCTGTCTCTCTTCTTCTTCATTCCTCTTCTTCTGCATTTTGTACCAACAATCCTTCAATCTCTCTATGAAACTGCACT CCACTTCCTTCCATGGATGAAGACCAAAAAGAGCCCTTTATCTTCCCCACACCACCCCATTTTCTAGCAAAATTGCTATC CTTCCAAGCAGATGTAATCTACAACCTCATGGCCTCTGTTTTTTCCCCTGTTTCCTCTGTTTTGACCTTGGCATCCGAGT CCTACCACCGTGCTGAGGAGACCAAGGAAAATGTTGAATCAGCAGTGGAAAATGCTCCTTATGGTGGCCTCATCTTGCTG AAGAAGCTGGGGCTTTGTGTTCTGAGTGCTGCATATGTGTGCATGGTTTTGTTTTTGGTTCTGATTCTAGCTGCTATTTT GGGTGTTGGTTTGGTTCGGTTCTGGGTGGAGGAGCCTGTGTTTGTTAAAGAAAGTTTGCATTTTGATTACACTGATGCTC ACCCAAAAGCTGTGTTTTTGTTTGATGGTGGAATCAGTGGGGTTGCAGGGGGGTATGTTAAGAAAAAGCAGATACGTGTT CCGGTTGGTCACACATTTTGTGTTTCTTTGGTGCTCTTGATGCCTGAATCTGACTTCAATAGGGAGCTTGGTGTGTTTCA GGTATGACTTGATTTGTCTCTGAAATTTCATTGAATTTTGCATGTACTATGCCTTTTGGATTTGTCCATTTTACATGCAA GGAAAGACAGCTGGTTTGAACTATCCCTTAAACAGACCTGCTTTTGTTGCAATTTATTTACATAATTGTTACTTATCAAC TGCTAGGTGCTGAGTGTTCTTAATTAATCAGTCATTAAGTCCTAGCCATCATGTGTATGTTTCAGGAGTACAATGTTATG ATTTTGGACAAATATTAATAAAATTATTGCATCTGGATCACTGGATGGTTATGCTTCTGTTCATAATTCTTCCACTTACT TGAATTTTCTCTTTAGTTTCTTTGATCTTACAGTTATATTAGGGTCTATATATGAAACATCCTTCTACGTTCAAATATAT CCATCATATTGTGATCTACCCTTACTCGGTGCATGTTTGGAATTCATTTTACAATTGATTCTAAAGCTACAATTAATTCT AAAGGCATAATGAATTTTGTGTGGAGAAGTTCATGTGAGTAGCTTCTGGTTTAGAATTGATTCTAGAGGCAGAATCAATT TCGGGGAAAAACATATGTGAGTAGCTTCCGGTTAAGAATTGGTTCTATGAAAAGAGAGTCTTCTGTGTGTTAGCTTATGT GTTTCAGAATTGATTCTCAGAATAGAGAAACTGATCCAAATATATCAATTGAGAGAGTACTTTGCTTTTTGTCTCAAATT ATGTCAACAAGGAGAATAGAAGAAGGAAAAAACTTTACTTTTTGCTCTATAGTTTATGTGAATAGTGATTACCATAAACA TGTGTACTTGATCAAAGAGATCTGTTTCTTTAAGAATTAATTGGAGTTTTTCTTTTCTTCTCTTCTCTTTTCTTTTTCCA GTTGACAGCAGAACTCCTAGCAGTACATGGAAATGTAACAGCAAAATCCAGCCAGCCATGCATGTTGCGGTTCCGCAGCT CTCCCGTTCGACTAGCCAGGACAGTCATGATGGGTGTGCCTTTGGTTCTAGGAATCTCAGGTGAAACCCAGAAACTCAAT GTAGAAATATTAAAGCACAAGGAAGACAGGAGAAGAAGCAATGCTATCAGAGTCACCCTGCACCCAAGAGCAGGAACTTC ATCTCTTCCTCAGATATATGAAGCTGAAATCGTGATAAAGTCCAAACTTCCTTGGACTAAAGAGTTTGTCCGCAATTGGA AATGGAGTTTCTATGTTTGGGTGTCCTTGTATGTCTATATTGTGCTACTCATGTTTCTCCTTTGTTACTATAGGCCACTC ATCTTTCTGGTCACACCAGAAACTTTTAGTTATCATAGGGTTAGTGAAGTCACAAGTGAAGAAGTAGCTACAGAATCATC ACAAATCAGGGAATTTGTGGATGAAAGTGAGGTTTCTGAGTTGTTGAGGAAATGGAGGCGAAGCAGAAGCAAGAGAAAAG CTATCCTTACACATGATGGTGGTGGTGGTGGTGTGGGAGAAACCATTGGCTCATCAGGTTCCAGCATCAGCATGACTACT ACTAGAGAAGATGTGACCAGTGTGGCTGTGGAACATGATGTCGAGGATTCTGAATCGGTGTGCATAGATTAGAAGGTTAG TTTCAGCTACTTGTATATGGTTTACTGTGAGTATGAGAACTTGAGTAAGCTGTAAGGTATGAAGAAAGTGATATCTTGCA TTGCTATGTTACTTGGTCACATTCTTATATCAATGTTATTGAAGTACCTTAGAATACTCAACCCTCTCTATTTATAGGGA GATTATCGGGTGGTCCACCGATGATCCACGCTACGATCCACGCTACGGTGACTTGTTAGATTCATAATCGTCAATTAAAA GCTAAAAATAGTGAACACTACAAAAAAGAAAAATAGTGTTGGCTGAAGGTCAAAAATTGACACTTGTTGGCGCTACTTTT CACTAATGACATGCCTTCCTTTTAGCATTAGTGTTGTGGCGCTACTATTAGCTAATGACATGCCTTCCTTTTAGC
CDS sequence (LotjaGi1g1v0485400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAAGACCAAAAAGAGCCCTTTATCTTCCCCACACCACCCCATTTTCTAGCAAAATTGCTATCCTTCCAAGCAGA TGTAATCTACAACCTCATGGCCTCTGTTTTTTCCCCTGTTTCCTCTGTTTTGACCTTGGCATCCGAGTCCTACCACCGTG CTGAGGAGACCAAGGAAAATGTTGAATCAGCAGTGGAAAATGCTCCTTATGGTGGCCTCATCTTGCTGAAGAAGCTGGGG CTTTGTGTTCTGAGTGCTGCATATGTGTGCATGGTTTTGTTTTTGGTTCTGATTCTAGCTGCTATTTTGGGTGTTGGTTT GGTTCGGTTCTGGGTGGAGGAGCCTGTGTTTGTTAAAGAAAGTTTGCATTTTGATTACACTGATGCTCACCCAAAAGCTG TGTTTTTGTTTGATGGTGGAATCAGTGGGGTTGCAGGGGGGTATGTTAAGAAAAAGCAGATACGTGTTCCGGTTGGTCAC ACATTTTGTGTTTCTTTGGTGCTCTTGATGCCTGAATCTGACTTCAATAGGGAGCTTGGTGTGTTTCAGTTGACAGCAGA ACTCCTAGCAGTACATGGAAATGTAACAGCAAAATCCAGCCAGCCATGCATGTTGCGGTTCCGCAGCTCTCCCGTTCGAC TAGCCAGGACAGTCATGATGGGTGTGCCTTTGGTTCTAGGAATCTCAGGTGAAACCCAGAAACTCAATGTAGAAATATTA AAGCACAAGGAAGACAGGAGAAGAAGCAATGCTATCAGAGTCACCCTGCACCCAAGAGCAGGAACTTCATCTCTTCCTCA GATATATGAAGCTGAAATCGTGATAAAGTCCAAACTTCCTTGGACTAAAGAGTTTGTCCGCAATTGGAAATGGAGTTTCT ATGTTTGGGTGTCCTTGTATGTCTATATTGTGCTACTCATGTTTCTCCTTTGTTACTATAGGCCACTCATCTTTCTGGTC ACACCAGAAACTTTTAGTTATCATAGGGTTAGTGAAGTCACAAGTGAAGAAGTAGCTACAGAATCATCACAAATCAGGGA ATTTGTGGATGAAAGTGAGGTTTCTGAGTTGTTGAGGAAATGGAGGCGAAGCAGAAGCAAGAGAAAAGCTATCCTTACAC ATGATGGTGGTGGTGGTGGTGTGGGAGAAACCATTGGCTCATCAGGTTCCAGCATCAGCATGACTACTACTAGAGAAGAT GTGACCAGTGTGGCTGTGGAACATGATGTCGAGGATTCTGAATCGGTGTGCATAGATTAG
Protein sequence (LotjaGi1g1v0485400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEDQKEPFIFPTPPHFLAKLLSFQADVIYNLMASVFSPVSSVLTLASESYHRAEETKENVESAVENAPYGGLILLKKLG LCVLSAAYVCMVLFLVLILAAILGVGLVRFWVEEPVFVKESLHFDYTDAHPKAVFLFDGGISGVAGGYVKKKQIRVPVGH TFCVSLVLLMPESDFNRELGVFQLTAELLAVHGNVTAKSSQPCMLRFRSSPVRLARTVMMGVPLVLGISGETQKLNVEIL KHKEDRRRSNAIRVTLHPRAGTSSLPQIYEAEIVIKSKLPWTKEFVRNWKWSFYVWVSLYVYIVLLMFLLCYYRPLIFLV TPETFSYHRVSEVTSEEVATESSQIREFVDESEVSELLRKWRRSRSKRKAILTHDGGGGGVGETIGSSGSSISMTTTRED VTSVAVEHDVEDSESVCID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 3 | 412 | 410 | 7.3E-150 | ||
| PANTHER | 3 | 412 | 410 | 7.3E-150 | – | |
| Phobius | 28 | 48 | 21 | - | – | |
| Phobius | 49 | 78 | 30 | - | – | |
| Phobius | 79 | 112 | 34 | - | – | |
| TMHMM | 85 | 107 | 23 | - | – | |
| Pfam | 95 | 301 | 207 | 2.4E-41 | ||
| Phobius | 113 | 131 | 19 | - | – | |
| Phobius | 132 | 149 | 18 | - | – | |
| Phobius | 150 | 213 | 64 | - | – | |
| Phobius | 214 | 230 | 17 | - | – | |
| Phobius | 231 | 292 | 62 | - | – | |
| TMHMM | 291 | 313 | 23 | - | – | |
| Phobius | 293 | 313 | 21 | - | – | |
| Phobius | 314 | 419 | 106 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid storage | The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development. |
Expression pattern of LotjaGi1g1v0485400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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