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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0485500 |
| Transcript ID | LotjaGi1g1v0485500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 4-hydroxy-4-methyl-2-oxoglutarate aldolase; TAIR: AT5G16450.1 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; Swiss-Prot: sp|Q9FFE0|RRAA2_ARATH Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2; TrEMBL-Plants: tr|I3SFU5|I3SFU5_LOTJA 4-hydroxy-4-methyl-2-oxoglutarate aldolase; Found in the gene: LotjaGi1g1v0485500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99871338..99871898) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCCTGGTTACCACTGCTGAGGTGTGTGATGCAAATCCACAACTAATTTTGAGCGGGGAGGTTCGTGCCCTTCACCC AGTTTTTCAGATCTATGGTCGGAGACAGGTTTTCTCTGGCCCTGTAGTTACCTTGAAGGTATTTGAGGACAATGTTTTGG TCCGCGAGTTCCTTGAAGAGAAAGGCAATGGAAGAGTGCTTGTGGTGGATGGGGGAGGGAGTTTGCGCTGTGCAATATTG GGCGGAAACCCTGTGGTGCAAGCACAGAACAATGGATGGGCAGGTATTGTTGTGAATGGATGTATAAGAGATGTGGATGA GATCAATGGTTGTGATATTGGGGTGAGAGCTCTAGCTTCACACCCCATGAAAGCCAATAAGAAAGGCATGGGAGAAAAGC ATGTTCCCATAACTATTGCTGGGACTAGGATCTCTGATGGGGAATGGCTTTATGCTGACACAGATGGAATTCTGATATCT CGAACCGAGCTTTCTGTTTAAATTGATGTGTTTGGATTTCCGTTACATTCGTCTAAAAGCACTTTTGTTCAAATCCATTA A
CDS sequence (LotjaGi1g1v0485500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCTGGTTACCACTGCTGAGGTGTGTGATGCAAATCCACAACTAATTTTGAGCGGGGAGGTTCGTGCCCTTCACCC AGTTTTTCAGATCTATGGTCGGAGACAGGTTTTCTCTGGCCCTGTAGTTACCTTGAAGGTATTTGAGGACAATGTTTTGG TCCGCGAGTTCCTTGAAGAGAAAGGCAATGGAAGAGTGCTTGTGGTGGATGGGGGAGGGAGTTTGCGCTGTGCAATATTG GGCGGAAACCCTGTGGTGCAAGCACAGAACAATGGATGGGCAGGTATTGTTGTGAATGGATGTATAAGAGATGTGGATGA GATCAATGGTTGTGATATTGGGGTGAGAGCTCTAGCTTCACACCCCATGAAAGCCAATAAGAAAGGCATGGGAGAAAAGC ATGTTCCCATAACTATTGCTGGGACTAGGATCTCTGATGGGGAATGGCTTTATGCTGACACAGATGGAATTCTGATATCT CGAACCGAGCTTTCTGTTTAA
Protein sequence (LotjaGi1g1v0485500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALVTTAEVCDANPQLILSGEVRALHPVFQIYGRRQVFSGPVVTLKVFEDNVLVREFLEEKGNGRVLVVDGGGSLRCAIL GGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGMGEKHVPITIAGTRISDGEWLYADTDGILIS RTELSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 166 | 166 | 1.9E-102 | – | |
| PANTHER | 1 | 166 | 166 | 1.9E-102 | – | |
| Gene3D | 3 | 166 | 164 | 2.8E-66 | – | |
| SUPERFAMILY | 4 | 164 | 161 | 9.68E-46 | ||
| Pfam | 6 | 158 | 153 | 4.6E-43 | ||
| TIGRFAM | 6 | 160 | 155 | 7.5E-66 | ||
| CDD | 7 | 160 | 154 | 2.09259E-55 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease inhibitor activity | Stops, prevents or reduces the activity of a ribonuclease, any enzyme that catalyzes the hydrolysis of phosphodiester bonds in chains of RNA. | ||
| Biological process | Regulation of RNA metabolic process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving RNA. |
Expression pattern of LotjaGi1g1v0485500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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