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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0491800 |
| Transcript ID | LotjaGi1g1v0491800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|O62389|NHR61_CAEEL Nuclear hormone receptor family member nhr-61; TrEMBL-Plants: tr|G8DCX5|G8DCX5_PHAVU Putative non-LTR retroelement; Found in the gene: LotjaGi1g1v0491800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100521973..100523644) extracted from Lotus japonicus Gifu genome v1.2.
GGTAAACTTTCATAAAAGCAAATTGGCTGATATCTCTTTACAAGAAGATGTTACTGATATATTTCTTGCTGGAAGTATCC CTGATCCCATTGATAACGAGTGGGACCAAATAATTCAATCGGGGTAGTTGCTGAACCATTCCACATAGTTCCAGCAACAA CAAAAGCTGCAAAAAAGACAGCAGCGATACTACTGGAAAGGACGGTTTCAATATTTCCCATACGTAATCCTTTATGTCCC TGCTGCAATATGATGAGAGGCTCTGGCATGAAGGTAAACTTTCATAAAAGCAAATTGGCTGTTATCTCTTTACAAGAAGA TGTTACTACTCGCTTTGCATCTTTGCTCCACTGTCGAGTGATGGCAGTTCCATTTGTGTATCTAGGCTTGTCAATAGGAG GAAGCCCACATAGGCTGTCCACGTGGGAACCGATTCTGGTAAAACTGCTGACGGCTTTGCCGCTGTATTTCATCTCTTTT TTCAGGATCCCAAAAGGGGTGACTGCAAAATGCAATCAAATTATGACCAGGTTTCTTTGGGGTGGGTCTGAAGAGGGGAA GAAGATCCCTCGGGTCAGCTGGGCTAATATTTGTAGACCGAAACTTGAAGGTGGTTTAGGTGTGCGCGATTTAGATCTGT TCAATGTCGCATTACTTGGCAAATGGAGTTGGAGGATGCTTCATGACCATGATCAAATGTGGTGCAAGGTGCTGATGTCA AAGTATGGTAAAGGGCACAATTCAAGAGCATCCTCGTGGTGGAAGGATTTGCTCAAGTCTTGTGTTGGGGAGCCTGCGGG ATTGTGGTTTGAGAATGGCTTGTGTTGGAGGCTTGGTGAGGGAAATTGCACGCAATTTTGGGGGCAAGGGGAATTTTCAG GTCCAATTTGCTGATCTGTACAGTATTTCTGAACAAAAAGGCATGAGTCTGGCAGAGGTAGGGAGTTGGATTGATGATAA ATGGACTTGGGATTTTAAATGGTCTGAAATTGTGACAGGCGAGAAAATATCCCAACTTGATTCAATGCTGAGAATTGTTT CGTCATTCACTCCAGTTAAAGGGATGAGTGATTGCGAGAGAGGGATGGGAGGTATTCTGTGAAATCTGCATATGATGCAT TATTTAAGGCTGATATTGAGAAGGAAGATGATTGTTTCATGTTACTTTGGCGGATTGGTGCTCCATCTAACGCTTTATCA GTGGGCTGGAAGGTGCTATTGAATCGAATTCAAACTCGAGACAATTTGCTGCGAAGACAGGTCCCTATTCCTGACCCCCG GTGTCCTTTATGTAGTGTTGATGACGAATCTGTTGGACACTTGTTCTCCTCCTGTTCGTGCGTTTCACAGGTTTGGTCTT TGGTCTTGAATTGGCTCGGACTAAGCTTTGCTGCCCCTGCATCAGTGAAGGATCATTTTGTGCAATTCTCACACTTGTGG CCTTCGAATAAAAAAGCTGGCTTGTTCACAGTATGGTTGGCGGTTATATGGCAAGTGTGGATGGGGAGGAATGAAAAAAT TTTCAAGGATGGCTCTTTTGATCCTGTTTCAGTTTTTGAGATGGCACGTTTGAAGGCATGGGAATGGCTGAGATACAAGA CCAGTAGCTTTCTTCATGGTACTGCTGAGTGGGTGAATGAGCCTTTGGCTTGCCTGGATGATATATAATGCG
CDS sequence (LotjaGi1g1v0491800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTACTTTGGCGGATTGGTGCTCCATCTAACGCTTTATCAGTGGGCTGGAAGGTGCTATTGAATCGAATTCAAACTCG AGACAATTTGCTGCGAAGACAGGTCCCTATTCCTGACCCCCGGTGTCCTTTATGTAGTGTTGATGACGAATCTGTTGGAC ACTTGTTCTCCTCCTGTTCGTGCGTTTCACAGGTTTGGTCTTTGGTCTTGAATTGGCTCGGACTAAGCTTTGCTGCCCCT GCATCAGTGAAGGATCATTTTGTGCAATTCTCACACTTGTGGCCTTCGAATAAAAAAGCTGGCTTGTTCACAGTATGGTT GGCGGTTATATGGCAAGTGTGGATGGGGAGGAATGAAAAAATTTTCAAGGATGGCTCTTTTGATCCTGTTTCAGTTTTTG AGATGGCACGTTTGAAGGCATGGGAATGGCTGAGATACAAGACCAGTAGCTTTCTTCATGGTACTGCTGAGTGGGTGAAT GAGCCTTTGGCTTGCCTGGATGATATATAA
Protein sequence (LotjaGi1g1v0491800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLWRIGAPSNALSVGWKVLLNRIQTRDNLLRRQVPIPDPRCPLCSVDDESVGHLFSSCSCVSQVWSLVLNWLGLSFAAP ASVKDHFVQFSHLWPSNKKAGLFTVWLAVIWQVWMGRNEKIFKDGSFDPVSVFEMARLKAWEWLRYKTSSFLHGTAEWVN EPLACLDDI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 159 | 158 | 1.3E-25 | – | |
| Pfam | 2 | 66 | 65 | 9.0E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0491800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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