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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0492500 |
| Transcript ID | LotjaGi1g1v0492500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT2G44710.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q; TrEMBL-Plants: tr|K7LFW0|K7LFW0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0492500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100598154..100604503) extracted from Lotus japonicus Gifu genome v1.2.
AATCACTAATTGAAATATAAATAGTGAATAGTAGTCTCAATTTCTGTTTCTATTGAATGTGTTCCCCTTTGTTCGTTATT GATTGATTCTCAGGCTACATACCTAGGGTTTGCTGTTTTCTCTCTCTGTACGTAAAGTTCTCTCCTTTTCTTCATATTCA ACACTTTCACTCGCTTCTAACTTTGATTTCGACTTCAATTGCGATCATAATTTAGGTTTTGAATCCTTCCATCTTCTGCA AATTAGGGTTTAATTTAGTGTTTTCTGATTCGCATTCAATCAATTATTCTCTTTGTTTTGGAATCTAATCCCTTTCATTC GGGTACAGGAAGCGTTGATTATGCCTCCAAGAATAGTGAAACGAGGTGCTGCGGCAAGGAAAGCGAAGGCTTCTTCAAAG GCTGCTTTGGAGAACCAGCGTCAGCAACAGGAACCTGAACCAGTTGAGGAAGTGGTTGTGAAGAACCATGAAGAGAACCC AGTTGTTGATGATGCTGTTGTGGAAGAGAAGCCAATTGATGCGGAGGACCAATTGGCCCCAGAGGGTGTGCCTGATGTGA CAAGTAAGTTCCTTTGAATGGTTTTTGTGGAATTTTGTATTCTGATCTAGGAAGCTGATATATGTTCATTGTTCGAATTA GCGGTTGATGCATGTTGGGGTTGTTACTTGACATGGGTGTTTATCAAAAGTTCTTAAATTGCTTGTATTAGAGGTTAGAT GGTTATCAAGTGAACAAGGTTTTAAATCTCATTCGCGCGGTAACGGTTCCGGTTTTCGCGGTAGCGGGTATTATGGTTGC TGCAATGTGTGTTGCGGCGGTTGCGATGTGAATTATTCACAATTTTCACAAAATTGCACTAACATTAGTTTTATACTATA TGATCCATAATAATAACTCATGACTATCCTTTTTTCATTGATATAAGATACTCAGTATAAAGATGATGAAATTAGAATCA ATGTGATAAACATCATACCTTAACGTAATAAATCAATAACTATTCGCAGGTCCCTGATACATAAACCAAATTAAGCTATG CCTAGATGTTGAAGCATTATTTGACCTAGTTTTTTGTCGGTCATATTTGACTGATAAGCTATGCAAATTTTTTTAGCCCA CAACTTGCAACCCTGCCCCCATTCACTCTTTAGGTGTCGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATCTTTAGC TTTCTGCCTTTACTCTCTCCGTAGCCACTACTTAATCAAAACCAAGCCACCAAGTTATCACCCCAATACAACCCACAAAC CACAGATCCGGCAGCGAGAAGCATGGTGGGACAACAAAAGATCGCAAAGCCTAAAAGGCTGGAAAATGTGAAAACTGGGT GTTGTGAAGACCACAAAGCCAAAAAAGTGGTAGTTGAGTTGTTGTCGTACCATCTCTGCGGTGATAAAAATGGAGAGGCA GTCTCTGTTGCAGGCAAAACGGTGTTACGCGGCGTATGTTGCGACCGCGACACCATTCCGTTGTGGTCGTTATGTGTGAT TTTCCTTCCCACCAGGATATTGTTCTGTATCGTTATCGGTGGCCCCCGATTCGATTTTGTCGCGGACGATATTGATGTGT CGGAGCGATATTTAAAACCTTGCAAGTGAATTTGGGTTCTATTCTTGTGTAATTGTATGAAAGCTCTATTATTTTTATTC TCTTGAAAATATCTTAAGTACCATTTCTTATTATGTTATACTGGGATAATTAATATGTCATGAATTCTGCCCTACATTTG ATGTGCATTGAAAATAGAGCTGAGTTAAAATGGACAAAAGTGGTGCATTTTGGTTCCATTTAAAAGTTGGAACCAACATA ATAGGCTATTGCATCCAGCTCAATACGCTTGTCAAACGCTGCCTTAATTTGATTGTTTTAGGAAACTGCTGCTGAAAGTA TAGTTTGTTAGCTAAAGGTAATCTACCACTCCCTGGCTCAATTTGGAATGAAATTTCCTGTAAAAGCGTTTCTTGATAGA TCATAATTTGGTGGTTCTACCCATTCTTTCTTCTGTTGTACTTTTGTCTTTTGGCAACTTGAGATGGACGGCTATACTAT GGGGTGGATGTGCTGCGAGAGTAGACTTTTTTATTTCTTTTGTATTTGCCCAAGTTATTTTTCTGTTGTGTATTAGATTT TCCATCACTTGAAGCTGGAAATACTTTGAACTGTGAATGATGAGGATTGGTTATGGATTATCGACTACCCTAATTTAATA AATACTATGATGTTGGATAAGTGAGGTATGCTTTGACTGGGATGATTAACATTTATTTTCTGGCAGACAATGCTGGGGAG GTTAAGGAGTCCATAGATGAATTTGAAAACGATGAACACTTGGATTTGGAGGATAATGATCCTGAGTATGGAGCTGAGGA GTATGGTGGAGTTGACTATGATGGGAAGGAAATTGAGCAAGATGAGGATCAGGAGGTGGGAGATGAAGTAGACGAAGAAC CTGAAGAGTTTGTGGTTGAAGAAGAGGGAGATTCAGCTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGGTGAT GATGAAGAGGAGGAGGTGGAGCATGCTGGTGAGGAGTCTGAGCATGAGCATCTGGGTGACGTGGAGGAAGAGGAACACCA TGAAATTGTAAAAGAGAGGAAGAAGCGTAAGGAATTTGAAGTATTTGTTGGAGGCCTGGACAAGGCTGCTACTGAGCATG ATCTGAAGAAGGTTTTCAGTAAAGTTGGGGTTATTACTGAAGTCAGGCTGATGATGAATCCTCAAACTAAAAGGAACAAG GGATTTGCATTTTTGCGTTTTGAAACTGTTGAACAAGCAAAAAAAGCTCTGGTAGAGCTAAAAAATCCAGTGGTAATCTT TGACCTTCTCATGATTGGAGCTGGTTTTAATTTGTTAGAGTATTAAATCACATGTTTTCATGACAACAATTTCAGATTAA TGGCAAACAATGTGGTGTTGCTCCATGTCAGGATAGTGATACTCTCTATTTAGGTAACATATGCAAGACATGGAAAAAGG AAGCTGTAAGTTTTATCTTTGTCTCTTTCTTGCCACCTTCAAGCCCTGACTTATGCTTAGTAGTGTTACTTCTTGCCACC TTCAAGGCCTGACTTTCTAACTCTGAATGCAACTTCTGATGGCAGTTAAAGAAGAAGTTGAAACATTATGGAGTTAAAAA ATTTGAGAATTTGACTTTAGAAGAAGGTGGCGAAGAGGGAACGAACCGTGGATTTGCATTTTTGGAATTTTCAACTCGTT CAGATGCTAAGGAAGCCTGTAGGCTACTGCAGAAGAGAGATGTTATGTTTGGAGTCGATAAGCCAGCAAAGGTTTCCTTT GCAGACTCCTTTATTGACCCAAACGATGAAACTATGGAACAGGTATTTTTCTGAATCTCATTTCCTTGCCAAGGGTTGTT ATGTAGAACCTACAAAGTATGGTTCTTCGACCTTGGATCACTTGTCCTATTTGTATCATCTACATTGGTTTCAAATCTTG GTGGTGGCTCATTTGTTTGCTAGGATGTATTTTGGATGTTATCTTTTGACTGTCTTTTTACTGATTACTTATAAAAGAAC ACTTGGTTTACTTTTATGGTGGATTAATATTTTTATACATATTTAACCCAGTTTACTTTGGAGGGTGGAGAAGATGAAAG TTTAGTAGTTTTAATGTATGGACAAACATGGATTTTATTCTTTACATAACTCATATTTGTTAATCAAGTGCCTTTTGTTT TTGGTGTAGCTGACTGATCAAGTGTATCTAAGTTGCAGGTTAAAACTGTATTTATTGATTCGCTGCCTCCTTCATGGGAT GAAAATTATGTCCGGGATCTTCTTAAGAAATATGGGGAGATTGAAAAAATTGAGCTTGCCAAGGACATGCTAGCTGCTCG TAGGAAGGATTTTGGATTTGTTACGTTTGGTACACATGCTGCTGCTGTGGAATGTGCTGACAGCATTACCAGTAAATGGT TAGGGGAAGGTGACAAAAAGGTATGTTTAACTTTTAAATACAATGTGATTGTGCAACAGGTAATATGGCATTTTATAATG CTTCCAGCTTCTTTCAGGCCAAAGTACGGGCTAGATTGTCAAGACCGCTTCAGAGAAGCCGAGGAAGACATGCTGTTCGT GGGGATAGCCGCGCTGGCCGAATAACTGGAAGATTGGCAAGGCCTTTACGGAGTCGACCTGCACTACGTAATCTTCCTCC CCCCTCGGTGAGAAGAATTAGAAGTCGTGTTCCTCCAATTCGACCTTCTAGTCTGAGAGATAGACGCCCAGTTGCGTCCA TGCCTGTAAGAGCTAGGCCTGTCGCTCCTCCAGCTAGATCTTATGACAGGAGATTTGCTGGTATGAATTATGTTCCCCCC CTCTAGCAGACTTATTGTTAGTCTTTCTTTAAGCAATTATGATAATATGCTATGCTATTGTCTTGTCAGCACCTGCATAT CCAAAAAGTAGCATGAAGAGATATCATGGTAGGCATGAAGATCTGCAACCTCAAAGAAGTAGAGTTTCTGCTGATTATGG ATCTAGGATGGCCTCTCAAGGGCATCCATCTCTTAGAGAATATCCAGCCCATGGCTCTGACTACCCTGAGCTGCATAGAA ATACATCTCGTGCTGCACCAGGGAGAGTTTATCCAGATGATGGCTATGGTCAGCGTCTTGAGAGGCATGCTCCTCCTCCT CCTCCCCATGTAAGCTACCATGAAGGACGCCCCCATGATTATGGCACATTATCAGGCTCGAAACGACCTTATACTGCTAT AGTAAGTAACTAAGTACTATTTTTAAAAGTTATTTTAATTGTTTTAAATCTTATTTTGGTTTTGATTTAGGAAATGAGGT TTTTTTAACCATTATTTTTTACCAGGATGATGTTCCTCCACGATATGCTGATGCTGATGCTCACCAATCAAGATCTCGTT TGGAGTATGACTACAGAGGTAGTGCTTCAAAATATGGAGACGCTTATGGTGATAGGTTAGTTTCCTCTAAACATGGTTCA TATGTTCCCTCATCTCGTTCCTCTTGTTCTTTGATAACTTATTCGGTTATTCCTTACATATTGATGGGCAGGCATGAAAG GTCTACTGTGGGATATAGTGGCAGTAGAAGTTCTATATCTATTCAAAACTCACATGGGACATATAGCAGCCGACAGGCAA CCGGTTATGGTGGAGGTGGTTATTGTTGCAGATAATCTGTTATTTTGAACATCAAAATTTTACTTGCTCTGCTCTTACAT CTTTATTATGTGTTGCATTGCATGTCAGGTTCTTTCGGTGGTGGTGGCGGCGGCTTATATTCATCAAGTTATGGTGGTGA TTACATACCTCGTGGAAGTGATGTAATGTCACTGGCTTTTCTTAATTGGAAATAGTGTTTTATATGGCTGTCTAGTTGTG ACACTTACATTTTATCCTGTTGGTGCTTTAGGTTGGAGGCAGCACGTATTCATCAATATATTCTGGCAGGGGCGGCAGTG GTAGCAGTAGTTACATGGGTGGTGGAGGAACTAGGTCTTATTATTGAGGTAAGCCATCTGATAAACTCCTTGTCATCCCA TTTTGTAAAGTACACAGGGAATCCCAAAATAAGTAAATCTATTTTTCTTGAGAGATTTCTCAACCCTCGAAAGTTTTCTA TATTTTTCTGTAAGGGATGACCAGCAAAGCAATGATTTCACACCTGATCACTAGTGAATTTGTCTATGAACAGATTAAGT ATATAGTAGAGGCTGCTGTAGGATGTGGAATTTTGAAGCTTATGCACTTTTTGGAGACAAAGGAACATTGCTTAGTAATT GCCTGGTTGGCAATATGTCATGACCCAAGCATTATGTTAATTGAGGATATCTTGGGTCTGCTCTGGATGGAGATTTGAAG TTCTTGAATTTCCGCTGTAAGTACTGAAGTTAAGATGGAAAAACAAGTGCCAAACATGTGGTTTGTATTTAAACCTCATT TTGCAAGTCCCCTATGTAGGTAGCTGATGTGAAAGGTTATTCCCTGTTTTGTTCATTTTGGAATGAAAACAGGGCCAGAG ATGTTACTTTTAAATTAAAGATTATTGGGATTTTTTCCTGCTGTAAAAAAAGGTTGACATTTAGAATTGTGAAAGAGATG TTACTTTGGATTTGATTATTTTCTTGCCAGTGCCATGGTCATGAACAGGAATTCATTTTTTCAGACTCTTCAATGCCTGA TTTATCGTGCTCTATTATTGAGCTTTGAATTTACAACCTTTGTTTGCTTACTTTCAAGTTGTCTATCAAGCACACTTTGT TCCCCAATGAAGAGCTTTCACTAATTCGCC
CDS sequence (LotjaGi1g1v0492500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCCAAGAATAGTGAAACGAGGTGCTGCGGCAAGGAAAGCGAAGGCTTCTTCAAAGGCTGCTTTGGAGAACCAGCG TCAGCAACAGGAACCTGAACCAGTTGAGGAAGTGGTTGTGAAGAACCATGAAGAGAACCCAGTTGTTGATGATGCTGTTG TGGAAGAGAAGCCAATTGATGCGGAGGACCAATTGGCCCCAGAGGGTGTGCCTGATGTGACAAACAATGCTGGGGAGGTT AAGGAGTCCATAGATGAATTTGAAAACGATGAACACTTGGATTTGGAGGATAATGATCCTGAGTATGGAGCTGAGGAGTA TGGTGGAGTTGACTATGATGGGAAGGAAATTGAGCAAGATGAGGATCAGGAGGTGGGAGATGAAGTAGACGAAGAACCTG AAGAGTTTGTGGTTGAAGAAGAGGGAGATTCAGCTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGGTGATGAT GAAGAGGAGGAGGTGGAGCATGCTGGTGAGGAGTCTGAGCATGAGCATCTGGGTGACGTGGAGGAAGAGGAACACCATGA AATTGTAAAAGAGAGGAAGAAGCGTAAGGAATTTGAAGTATTTGTTGGAGGCCTGGACAAGGCTGCTACTGAGCATGATC TGAAGAAGGTTTTCAGTAAAGTTGGGGTTATTACTGAAGTCAGGCTGATGATGAATCCTCAAACTAAAAGGAACAAGGGA TTTGCATTTTTGCGTTTTGAAACTGTTGAACAAGCAAAAAAAGCTCTGGTAGAGCTAAAAAATCCAGTGATTAATGGCAA ACAATGTGGTGTTGCTCCATGTCAGGATAGTGATACTCTCTATTTAGGTAACATATGCAAGACATGGAAAAAGGAAGCTT TAAAGAAGAAGTTGAAACATTATGGAGTTAAAAAATTTGAGAATTTGACTTTAGAAGAAGGTGGCGAAGAGGGAACGAAC CGTGGATTTGCATTTTTGGAATTTTCAACTCGTTCAGATGCTAAGGAAGCCTGTAGGCTACTGCAGAAGAGAGATGTTAT GTTTGGAGTCGATAAGCCAGCAAAGGTTTCCTTTGCAGACTCCTTTATTGACCCAAACGATGAAACTATGGAACAGGTTA AAACTGTATTTATTGATTCGCTGCCTCCTTCATGGGATGAAAATTATGTCCGGGATCTTCTTAAGAAATATGGGGAGATT GAAAAAATTGAGCTTGCCAAGGACATGCTAGCTGCTCGTAGGAAGGATTTTGGATTTGTTACGTTTGGTACACATGCTGC TGCTGTGGAATGTGCTGACAGCATTACCAGTAAATGGTTAGGGGAAGGTGACAAAAAGGCCAAAGTACGGGCTAGATTGT CAAGACCGCTTCAGAGAAGCCGAGGAAGACATGCTGTTCGTGGGGATAGCCGCGCTGGCCGAATAACTGGAAGATTGGCA AGGCCTTTACGGAGTCGACCTGCACTACGTAATCTTCCTCCCCCCTCGGTGAGAAGAATTAGAAGTCGTGTTCCTCCAAT TCGACCTTCTAGTCTGAGAGATAGACGCCCAGTTGCGTCCATGCCTGTAAGAGCTAGGCCTGTCGCTCCTCCAGCTAGAT CTTATGACAGGAGATTTGCTGCACCTGCATATCCAAAAAGTAGCATGAAGAGATATCATGGTAGGCATGAAGATCTGCAA CCTCAAAGAAGTAGAGTTTCTGCTGATTATGGATCTAGGATGGCCTCTCAAGGGCATCCATCTCTTAGAGAATATCCAGC CCATGGCTCTGACTACCCTGAGCTGCATAGAAATACATCTCGTGCTGCACCAGGGAGAGTTTATCCAGATGATGGCTATG GTCAGCGTCTTGAGAGGCATGCTCCTCCTCCTCCTCCCCATGTAAGCTACCATGAAGGACGCCCCCATGATTATGGCACA TTATCAGGCTCGAAACGACCTTATACTGCTATAGATGATGTTCCTCCACGATATGCTGATGCTGATGCTCACCAATCAAG ATCTCGTTTGGAGTATGACTACAGAGGTAGTGCTTCAAAATATGGAGACGCTTATGGTGATAGGCATGAAAGGTCTACTG TGGGATATAGTGGCAGTAGAAGTTCTATATCTATTCAAAACTCACATGGGACATATAGCAGCCGACAGGCAACCGGTTAT GGTGGAGGTTCTTTCGGTGGTGGTGGCGGCGGCTTATATTCATCAAGTTATGGTGGTGATTACATACCTCGTGGAAGTGA TGTTGGAGGCAGCACGTATTCATCAATATATTCTGGCAGGGGCGGCAGTGGTAGCAGTAGTTACATGGGTGGTGGAGGAA CTAGGTCTTATTATTGA
Protein sequence (LotjaGi1g1v0492500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPRIVKRGAAARKAKASSKAALENQRQQQEPEPVEEVVVKNHEENPVVDDAVVEEKPIDAEDQLAPEGVPDVTNNAGEV KESIDEFENDEHLDLEDNDPEYGAEEYGGVDYDGKEIEQDEDQEVGDEVDEEPEEFVVEEEGDSADEEVEYVYEEVEGDD EEEEVEHAGEESEHEHLGDVEEEEHHEIVKERKKRKEFEVFVGGLDKAATEHDLKKVFSKVGVITEVRLMMNPQTKRNKG FAFLRFETVEQAKKALVELKNPVINGKQCGVAPCQDSDTLYLGNICKTWKKEALKKKLKHYGVKKFENLTLEEGGEEGTN RGFAFLEFSTRSDAKEACRLLQKRDVMFGVDKPAKVSFADSFIDPNDETMEQVKTVFIDSLPPSWDENYVRDLLKKYGEI EKIELAKDMLAARRKDFGFVTFGTHAAAVECADSITSKWLGEGDKKAKVRARLSRPLQRSRGRHAVRGDSRAGRITGRLA RPLRSRPALRNLPPPSVRRIRSRVPPIRPSSLRDRRPVASMPVRARPVAPPARSYDRRFAAPAYPKSSMKRYHGRHEDLQ PQRSRVSADYGSRMASQGHPSLREYPAHGSDYPELHRNTSRAAPGRVYPDDGYGQRLERHAPPPPPHVSYHEGRPHDYGT LSGSKRPYTAIDDVPPRYADADAHQSRSRLEYDYRGSASKYGDAYGDRHERSTVGYSGSRSSISIQNSHGTYSSRQATGY GGGSFGGGGGGLYSSSYGGDYIPRGSDVGGSTYSSIYSGRGGSGSSSYMGGGGTRSYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 51 | 51 | - | – | |
| PANTHER | 1 | 753 | 753 | 0.0 | – | |
| PANTHER | 1 | 753 | 753 | 0.0 | – | |
| MobiDBLite | 30 | 51 | 22 | - | – | |
| MobiDBLite | 88 | 184 | 97 | - | – | |
| MobiDBLite | 89 | 106 | 18 | - | – | |
| Gene3D | 111 | 278 | 168 | 2.5E-25 | ||
| MobiDBLite | 115 | 168 | 54 | - | – | |
| MobiDBLite | 169 | 184 | 16 | - | – | |
| ProSiteProfiles | 198 | 276 | 79 | 17.046 | ||
| SUPERFAMILY | 199 | 343 | 145 | 4.06E-32 | ||
| SMART | 199 | 272 | 74 | 1.2E-22 | ||
| Pfam | 200 | 268 | 69 | 1.8E-19 | ||
| CDD | 200 | 271 | 72 | 9.36746E-20 | – | |
| ProSiteProfiles | 278 | 361 | 84 | 11.98 | ||
| SMART | 279 | 357 | 79 | 9.6E-5 | ||
| Gene3D | 279 | 360 | 82 | 4.8E-14 | ||
| Pfam | 280 | 346 | 67 | 2.4E-6 | ||
| Gene3D | 362 | 479 | 118 | 1.8E-13 | ||
| SUPERFAMILY | 367 | 471 | 105 | 1.75E-16 | ||
| ProSiteProfiles | 374 | 456 | 83 | 13.277 | ||
| SMART | 375 | 450 | 76 | 3.1E-9 | ||
| CDD | 376 | 450 | 75 | 1.40286E-11 | – | |
| Pfam | 376 | 439 | 64 | 9.4E-10 | ||
| MobiDBLite | 455 | 534 | 80 | - | – | |
| MobiDBLite | 550 | 665 | 116 | - | – | |
| MobiDBLite | 683 | 713 | 31 | - | – | |
| MobiDBLite | 695 | 713 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0492500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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