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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0493000 |
| Transcript ID | LotjaGi1g1v0493000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PRA1 family protein; TAIR: AT1G17700.1 prenylated RAB acceptor 1.F1; Swiss-Prot: sp|Q9FZ63|PR1F1_ARATH PRA1 family protein F1; TrEMBL-Plants: tr|C6TMF0|C6TMF0_SOYBN PRA1 family protein; Found in the gene: LotjaGi1g1v0493000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100646249..100647206) extracted from Lotus japonicus Gifu genome v1.2.
AACTAGTCTAAGTCTTGAACTCGCTGTCCTCACAGAAATAATTGATCATGTTCCCTTTTCTATATATACCAATTAGGTCC CGTTTCAATTTCCACAAAGTAAAATAAAAAGTACCCATCTTCTTACTAGTCTTCTTTGTGACATATTTGGAACAAACTTC TAGTATCATTTGTTGTTCATTAAGAATTCTTCTTCAATTGAACCATTCTTTGTGTTTTCTGAATTCCACTTTCAAGTGTT AGTCATGGCAAATTTTGGAACCACACAGAGATTACCCACTTCCTCAACCCCTTCATCCACTGACAACAACTATGAAGCAA AAGATAAGCTGTACCATGAGTTCAAATTCAAATTCTACTGCCCCATTGATATTCCCTCAACATCAGAAGCTACAGCAGTT AGAATCCTCAAAAATTTCACGAATCTGGGATTGTACTACACGCTCTTCGTGTGGATCATACTCTTCATAACCCTGATCCC AGAGCGCAAGGTGTCGTTGATTCTTTTGGTTATCATGACCTATGTGACAACAGTTTACTGTTTGATCCTAAGGTCATGTC CTAACTCTGTTTTGCTTCATAGGATCATTGATAAGAGGTTTGTGTTGTGTTTGCTTGCAATTGCAACTTCTGTGCAGCTG GTTTTGACTGAAGCGGGTATTCATCTTGCTGTGACTTTGGCTTCCAGTATGCCTGTGGTTTTGCTTCATGCAGTTTTGTG GGCTGGATATGATGCCTATGAGATTGAGAATGTCTCTGGTGCAGGTTATGAAAGTGTAGCTCAGAATGAAGATGCTGTTT GATTTTGTTGGGTATTACTAGTCTCTTTTAGAGTGAAAGAGATGTGGATGTAATACAATAATGTAAGGACAAGTGTTTGT AATAAGCATCACTACATGTAAGAAGTATTTCCACATATATCTTCAATAAAACTAGAGAAACAGAAACTTCACTATAAT
CDS sequence (LotjaGi1g1v0493000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAATTTTGGAACCACACAGAGATTACCCACTTCCTCAACCCCTTCATCCACTGACAACAACTATGAAGCAAAAGA TAAGCTGTACCATGAGTTCAAATTCAAATTCTACTGCCCCATTGATATTCCCTCAACATCAGAAGCTACAGCAGTTAGAA TCCTCAAAAATTTCACGAATCTGGGATTGTACTACACGCTCTTCGTGTGGATCATACTCTTCATAACCCTGATCCCAGAG CGCAAGGTGTCGTTGATTCTTTTGGTTATCATGACCTATGTGACAACAGTTTACTGTTTGATCCTAAGGTCATGTCCTAA CTCTGTTTTGCTTCATAGGATCATTGATAAGAGGTTTGTGTTGTGTTTGCTTGCAATTGCAACTTCTGTGCAGCTGGTTT TGACTGAAGCGGGTATTCATCTTGCTGTGACTTTGGCTTCCAGTATGCCTGTGGTTTTGCTTCATGCAGTTTTGTGGGCT GGATATGATGCCTATGAGATTGAGAATGTCTCTGGTGCAGGTTATGAAAGTGTAGCTCAGAATGAAGATGCTGTTTGA
Protein sequence (LotjaGi1g1v0493000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANFGTTQRLPTSSTPSSTDNNYEAKDKLYHEFKFKFYCPIDIPSTSEATAVRILKNFTNLGLYYTLFVWIILFITLIPE RKVSLILLVIMTYVTTVYCLILRSCPNSVLLHRIIDKRFVLCLLAIATSVQLVLTEAGIHLAVTLASSMPVVLLHAVLWA GYDAYEIENVSGAGYESVAQNEDAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 174 | 174 | 3.6E-79 | ||
| Phobius | 1 | 60 | 60 | - | – | |
| PANTHER | 1 | 174 | 174 | 3.6E-79 | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| Pfam | 42 | 160 | 119 | 3.4E-11 | ||
| TMHMM | 61 | 78 | 18 | - | – | |
| Phobius | 61 | 78 | 18 | - | – | |
| Phobius | 79 | 83 | 5 | - | – | |
| TMHMM | 83 | 105 | 23 | - | – | |
| Phobius | 84 | 102 | 19 | - | – | |
| Phobius | 103 | 113 | 11 | - | – | |
| Phobius | 114 | 133 | 20 | - | – | |
| TMHMM | 118 | 135 | 18 | - | – | |
| Phobius | 134 | 138 | 5 | - | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 139 | 162 | 24 | - | – | |
| Phobius | 163 | 185 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0493000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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