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LotjaGi1g1v0493400.1

Overview

Field Value
Gene ID LotjaGi1g1v0493400
Transcript ID LotjaGi1g1v0493400.1
Lotus japonicus genome version Gifu v1.2
Description WRKY family transcription factor; TAIR: AT2G44745.1 WRKY family transcription factor; Swiss-Prot: sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12; TrEMBL-Plants: tr|K7L159|K7L159_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0493400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:100687777..100694486) extracted from Lotus japonicus Gifu genome v1.2.

GACCAAACTACAAAACCCTTTGAAGAACTTAGGTTAAGCCACGAGAGAAAGAAAGTTATATATATAGCTAGCTAGCTAGG AAGAAGACCAAGTAGAAGAGAAAAGCAAATTATAAAGTGCATCATCAAATTGAGATTGGAATAATCTTAAAAAGAGAAAC ATGGAGGGAGAGAGAGGTGTTCCCAATTATGAGCTTCAAGTTTCATTCACCAACACCCCACACAACATCCAAGAAATAGG TTTTGCTCACTTTGAAGAAAACCAAGTCCTTGGTTTCATGTCACCCTCTTCACAATCTCAATCTTCTCAGCTCTCTCATA ATGAACTGGTCACCAAAACATCATGGAATCAACAAGACCAGGTGGTTTAATTTCAGTGATCTTCAAAATTTAAAGAAGAA AGTTCTCTAATGATCTTCATCCTTGTTTTAATTACTTATTGATTTTATTTATTTACTTTTGTTTTGACTTTTTCTTTCTT CTTATGTCCTTTTCGATTTTAGAGAATTATTTCCATCAATTTTCCTTGAAACGGTTTTTGCTTATTATGGTATTTTTTTT AGGTGGGAACTCTGGATCCCAAGACTATAAGTGATGAAAATTGCACTGGAACTGTTAGTGATGGCAACAACAAGTCATGG TATATATCCCTTTTCCAGCTTCAATTTCATTACCCTATTTCTATTTAATTTGTATGGCTCTTTTATCCTCTTAGTTATTC TCTCTCTCTCTAGGAGATGCAGTAGGTAAATATTCATCTAGATATATAACAAATTAAAGAGAGGCCTCTGAGCAAAATCT GTGGTTAAGATCTTTAATATGTAGAAGGGATTATTGTCTCTTTTATCTCTTGCATCATGAGGAGTATAAAGAGCTTAAAG ATGTAAAAGTCTTGATCCTCATTGATACTTGAATCCACTTGTGCTTGTGCATCACTGACACTTCATATATATTCTCATAG CATATCACTTTTCTATTGTTTTTGGTTCTATTTTCTTGCTTCAATATTTTTTATTTTAAGGATTAATCGTGTTCTAATTA CTTGAGAAAGATGGTTTTAACAGAGATGCAAGTTGGGTGGATTAATTAGTTGAAGTTAATTATCTTGAACCTTATATGTA TATTGTGATAGGTGGAGGAGTGCAGGTGCAGAGAAAGGCAAGGTGAAAATGAGGAGGAAGCTTAGAGAACCGAGGTTTTG TTTCCAAACAAGGAGTGACGTAGATGTGCTTGATGATGGATACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATA GCCTCCATCCAAGGTAATTTTAATTACAGTGATTATATGTAGCCCACGAAACATTAGTGCACTTCTTGCTTACACCTTAT TTAGTAGCAGTTTTTAACCTCCACAAAGTTTTGCGGCAGTAAAAAAAAGAACACAAGTAATGTGTCTAGCCGTGGTTGTT ACTATTTAGTAGGATATAATTTTTTTTTCATTTTGATTGACCTTTACTTTCTCTATTAAGTTATTCAATTTTATAAACCA TATTTTTGTAAAGAAAATAATGTATCACTCACTCATGCTCTCTCTTGTTTAAAGGATTGTGCGTTGTCAGTTTGGTTAAC CTAAAACATTATTTTCAAAATTCATTATTATTTATTATGACGTGACATTTACTACTTTAAGCGATCACTTATTGATTAGT TATAAGAGAGAACAAGATTTTGGAATGGAAGTAGAAAAGTTTTCACTCTCTGTACTGTCATATGGTATGGATCATTGATT AGCTAGGAAAGGGTCGCAATATAATTCGCTCCAATTTCTTGTTCTTAGCTACTATTTTGTAGCTAATCACCTAGTATATG ATTACACATCCTATTTTAGGGGTGTGTGCTAGCTAGAATCCTCAAAGGGAGGCATATATAACTAGTATATTTGAACGGAA GAAATCTGTGTTAACTCAAATGACATGAATATTGAAGAATAATCTTAATTAATTACAAAAACGTTTAAGATGGGAAACGA TCAAGAGAAATAGTTGACAAGTTATAAGTTTGATCTGAAGGATAGAACTTTCCTACTTAATTTGGTGTGTGAATCTATCA TAATGCAAATGTATTATATTGTTGAGTACACTGGCAACATCAAAGGCATTATACCTGGTGGAATTAATGAAGGTAATGTG TCGTTTTTGGGAAAAAAGTACTCAACAAAAGTGGTGTCGGCGTTGAATAATTGAATCAAATATATGCATGATTTATCTAG CGTTCACCATATATTCGGGCGGTGCATTGGTACAACCCATTTACAAGCAAGAAGATTTACAATAAGTCACAGGTTTATTG GGATAAATTATCTTGGAATTTGAAGGGGAGATGAAAGAATATGAGAAGTGGATTGTATTATTAGAGAGTTGACAATAAGA TGCACTGTAGGGTCCCCTATTTTCGTACGTACACTCCATTTCAAACTCATCTCATTTGTCATGGTATTCCTATCTTCTCC CCCATATATTCGTCTAAAGTTGCACTTGGACTTAAACTTTCCTTATACCTCAAAAACATTTATCTAATTTTTACCAGATC CAATTTATGCTGATACTAAAATGTACAAAAAATTGTTACATAAGAACAAACTTAATCGTGTTTTTCTTTTATATATTGCA TTATATTAACCTTTCTTTTCTGAACTATCATTGCACTATTCATTAGTTTACGCAATTGTCAAATCAATTATAAATGATGA TAACATATTTTTAATTATAATAAAAATTATAACTATGCAGTAATTCATTAATCATTAAAATTCGATGATAATTTGGCTAA AGACACATGACAAATAAGATGCCAAAGTCAAATTCTTTTAGAAAAAGATAAAAATAGGAAAGAGGTATGAATATGCAAGG ACAATGTTTTTCGAATTTAATGTCGAGCAAACCAATTAACTAAATAAATTCATATTAATTACTATTTTTTAATTTGCGTG ATCGATCAGGTTCGCCCGGTCTAGCAAAACAAATGAACAACTCAAACAAATGTGCTCGTTATTATGTATTAAATATATTT GTAAGGGATCTCCTTTTAATTGTAAATCAAATTTTTCATAAAGCCCGTTGTGTTATATAGGGATGCCATGTGGTGACTGG GTGGGGATTTTAATTATGGGTGGGGATTTTAATTATGTAAGGGGAGTGTTGAAGAGAGATTGAGTGCCACAGTCAATTTT TTTTTTCTGGACAAATATCATTTCATTGCAATGCAATCAAAACTTTTGTTCATCAATATCATGCATGGAAGCGGATATGG GAGAAAGTTTGACTAGGTTTTGATATAATGGATTGGCTTAAAAGTCGATAGATTCCAGGTTTCCCATGAATGGTTGGATA TGTTTGGCCAAATAGAAGCCAGTATGTTTTAATTAGGGATGTCTTTGAGACAAGGGGACCCTCTTGCCTCTTTTATGTTC CTCATTATTTCATAGGGGCTTAGTGGATTAATGAGACAAACTGTCAGGTTTCAAATTTAATTATGCTCCTGAAACTAAAG TGTATCTACTGTAGGTTGCCGACGATACTCTCTTTGTCGGAGACGCTTCATTGCATAATATTTTCAATATAAAATGCATC TTGCGATGTTTGAAATTGTGGCTTGATTAAAAGTCAATTTCTCGAAGAGTAAAGTTGCGGGAATCAGTGTGGAGAGTAGA AGCCTGATGAGTTTCGCTTCTAGGCTACATTGTAAGCAATTGAATCTGCCTTTCTCCTATCTTGTCATTCCAGTGGGTGG GAATCCTAGAAGATTATATCATGTTGGGATCCAGTTATCAACAAGCTTCAAAAACAACTATCAAAATGGAATAAAGAATC ACTCTCATTCGGTGGTAGGATTTGCTTAATCAAAGATGTCCCATCGTTCATTCCTCTCTACTTTCTTTCCTTTTTCAAGA TGTCGTCTGGGATTGTTGCAAAGTACAAAGATATCTTAAGGATATTTTTATGGGGGAGGGGGAGTGGAGGGTGAAGGGAA GATTTCATGGATTAAATGAGAGGATATCTGCAAGCCAAAAAGGGAGGGAGTTTCGGGAGTGAAGGATTGGAAGATCTTCA ATTGGGCACTTTTGGGAAAATGGCGGTGGAGAATGCTAAAGGAAAATGATAGCTTATGGTGTCGCATATTGCACACTGAG TATAAGAACAGGGTTCATCCAAATGATTCTTGGTGGTGGAGGTACCTAAACTCAATGTGCTTTGGAATTGATCATGGGAG GTGGTTTAGTGAGGCGGTATGTAAAAGAGTTGGGGATGAGAGAGATGTCCCTTTCTGGGACGAGGATTGGTCGACTAAAA TTTCCAAGGCTATAGGGTCCTTCATGCTGAAGTAACAATTGTGAATGAAATAGTCTCACATTGGATAAATAAGCAAGAGT AAAAGAGTTTATAAGTGGAAGTACCCAGGCACCCATTGTCTTAAGGTGTTGTGGTGAATGTATGTGGATGATGTCCTACA CCCAATGTGTGGATGGTAACTCCCAATCCCCTCATGAGTTGTAAGACTGTGAAGAGTCAAGCGTTCCGCTACGCCATTCC AACAGTGGTATCAGAGCCGATGGTGCGACCATATGGTAAACGACGAGTGAAGTCGATGGTGTGCAATGACCGAGTGAAAG GTCAATGGCAAGTGAGACCAATGATGTCAGCCATGAAATGACAATGGTGTGAGGACCCAAGCGAAATGTCGATGGCGAGT GAAGTCAATGATGTAACAATGATGCATGTGACGGCTCCTTGTATTGTTAAATCATCCCAGAAGTGTGAAGATTAGAAGGC AGTGAGCCCCCTTGGTGTTGAGTTCCAACGACGATACAAGAATGTACGAAGCGGAGTGCTCAAGGGGTGTATAAGGAGAA AAAAAAGGAAAGGAAAAAAAGAAGGAAAAATGCCCAGAAAAAGAAAAGAAAATGTAAACAAATGGATTCACAATTGAAGG AGACTGTTGAAGTAAAATTTGCATATGAAATAGTCCCAAATTGGATAGATAAGCAAGAGTTAAAGAGTATATAAGTGAAA GGACTCACTCACCCATTCCCTTAAGGTTTTCTGGTGAATGTATGTGGATGATGTCCTAGACCACTTATACTCTTAACCTC TAAACCCAATGTGTGGGTGCTCCCAACCCCACATGAGCCTAAGACTGTGAAGGTACGGTCTAGCATTCCGCTGCGTCATT TCAACACCTCAAATTCACTTGCAATTGTGTGGAAGGTGATGCTCAAAAGAGGTCAGACTAAAGTGGAATTGGCTGGCTTG AAGAAACGCTATCCCTGGTAATGTAGGGACATCTTGTGCTCTATGTTTGAACAATGAGGAATCAAACTTGCATCTGTTTC TTTGCTGTGAGACTGCGTGGTTGATATGTATATGAAAATTTATAGGTGCATGGTTGGGCTTTACCACAGTACTGCCGTGT GATATTGAAACTCACTTCTCACAATTTCTAGTTACTTAAACCGAAGAGGACTTAATTTTTAGATAAAAACAGTATTGGTA ACCAGCAGATTTGACTCTCAAGACAAAAGTTGTCTTATCTTAAAGTTTCGTGCATGGGAAGGGACAGTTTAAATGATTAA TTCTTTTCTGAGATTCTTTAGGACAATATTAATCCAGTCTAGAGTTCATCACTTGTTGGATTGGTGTACTGGTCTGCATT AGGCTTTGTCTAGAGTTGATGTATTAATAGTCTGCTTGTAACTTATAAACATAGGATTTATAAATATATAGAATAAGACT TGTAACTTAAAAAAAAATACAGAAAATAGTTACTTGAAAACTAGGTGTCAAATAGCAGCAAATTAAATTTATTATTCTCA CAACTTTTTTTTGAAAACAAAAATATTAATTAATAGATAATGATCGATAATACAAACATCACATGACAATGTGAGCAAAA AGTCTCCCAAATGCTACAACTTAATAATAGCAATGTTTATATCTACCTCCTGAATAGCTGGTAAATGCTTAGACTACCCC TAATGCAATATTGTCAAAGTTATATGATCTATTATCCTAAACTAAGAAAGCACAACAACAACTTTTAGATATCGCATCAT TGCAAAATTGCACTTCAAGATATGTACTTACAAGTGCAATAAGGAAGATGGAAAAATTATTGGAGTGATCAGGTTCATGA ATTGAGTGTACAAAAGTTTTCAAATATGATGGAACACATGGCTAAGACTAAGAATCCCTTTGGTTTACCTTAGAAAATAT AATTAACAAGGAAAACATAACACATGTGAATGCATTTTTTGGGATTTGGGTTCCTTGCATTCATTAATCTTCTATGTTAC CATGCAATACAAATTCCACTTTTTGTTAGTTACGTACCCAACTTTTTATCTTTGAAAAATTGTCTATTTCTTATACTGAT GATCTGAATTTTGGCATATGGCAGAAGTTACTACCGCTGCACCCATAGCAACTGTAGGGTGAAGAAGAGGGTTGAACGAC TTTCAGAGGATTGTCGTATGGTGATAACCACTTATGAAGGTAGACACAATCACATACCCTGCGACGACTCAAATTCATCC GACCAAGAATGCTTTACCTCTTTCTAATATATGTGAAGATCAGTAGTGATTGCATGAAAATAACACAATGTCGTTTCACA TGATCCACATATATTTTTTCACTCAATTATATTGAGACACTCAATATTTTTTTATAAGTAACATTCGGAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0493400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGGAGAGAGAGGTGTTCCCAATTATGAGCTTCAAGTTTCATTCACCAACACCCCACACAACATCCAAGAAATAGG TTTTGCTCACTTTGAAGAAAACCAAGTCCTTGGTTTCATGTCACCCTCTTCACAATCTCAATCTTCTCAGCTCTCTCATA ATGAACTGGTCACCAAAACATCATGGAATCAACAAGACCAGGTGGGAACTCTGGATCCCAAGACTATAAGTGATGAAAAT TGCACTGGAACTGTTAGTGATGGCAACAACAAGTCATGGTGGAGGAGTGCAGGTGCAGAGAAAGGCAAGGTGAAAATGAG GAGGAAGCTTAGAGAACCGAGGTTTTGTTTCCAAACAAGGAGTGACGTAGATGTGCTTGATGATGGATACAAATGGAGGA AATATGGCCAGAAAGTTGTCAAGAATAGCCTCCATCCAAGAAGTTACTACCGCTGCACCCATAGCAACTGTAGGGTGAAG AAGAGGGTTGAACGACTTTCAGAGGATTGTCGTATGGTGATAACCACTTATGAAGGTAGACACAATCACATACCCTGCGA CGACTCAAATTCATCCGACCAAGAATGCTTTACCTCTTTCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0493400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGERGVPNYELQVSFTNTPHNIQEIGFAHFEENQVLGFMSPSSQSQSSQLSHNELVTKTSWNQQDQVGTLDPKTISDEN CTGTVSDGNNKSWWRSAGAEKGKVKMRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVK KRVERLSEDCRMVITTYEGRHNHIPCDDSNSSDQECFTSF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31221:SF137
53 193 141 4.9E-79 –
PANTHER
PTHR31221
53 193 141 4.9E-79 –
Gene3D
G3DSA:2.20.25.80
112 186 75 6.2E-32
IPR036576
SUPERFAMILY
SSF118290
118 183 66 2.35E-28
IPR036576
ProSiteProfiles
PS50811
121 183 63 29.608
IPR003657
SMART
SM00774
126 185 60 1.3E-37
IPR003657
Pfam
PF03106
127 183 57 7.0E-25
IPR003657

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0493400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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