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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0503800 |
| Transcript ID | LotjaGi1g1v0503800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G13570.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570; TrEMBL-Plants: tr|G7L2Z5|G7L2Z5_MEDTR F-box protein; Found in the gene: LotjaGi1g1v0503800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102150868..102152863) extracted from Lotus japonicus Gifu genome v1.2.
GTCACCCTTTTGAACCGGCTTTGTTCCGTCCCTGTACGCAGTTATCAATTCTACAATTTCAAGTCATTTTAATTCTACCT TTTTTCTTGTTGCTGAAATTTTTCACAGCAGAAAATGGATTATATTAGTGAGTTGCCTGATTGCATCCTGGCTGATATCC TATCAATGTTATCCATGAAAGATATGTTAAACACTTGCTTACTATCTAAAAGGTTGTGCAACCTCTGGCATCTCAGGAGA GATCTCAAATTTGATCAGCTCAATGTGCTTGGAAGTGATGAAGAATTGCGACGAGCTGGATATTATGTTGATGTTCTGAA AAATGGTAATCAATGTGAACATCTTCATTTGGACGTGCTTAGGGATGAATTTGTGAGACGTGTTGATCAGTTTGTGAAGA ATTTTAAAGGTGACATAATTGATTCTATCGTGGTGCAGTTCAATTTAAACCTTGCAGAGAGTAACATCATTGATCAATGG ATCCGGTTTGCAATTTCAAAGGGGGCGGGAAGAATTGATGTGCTCTTTCTACCAAGGCGGTGTTATAGTTCCAGCAATTG TTACAAGTTTCCCTTTGGCTTATTTTCTGAGTCTAATAATTCAGCACTCAAGCATTTGCATCTGCTACATTGTCTCGTTT GTCATCCAGAAAACTCTGACCTTTTTCCGTTGACAAATTTGAGAAGTTTAGTACTTGAAGAATCACATGTGGATCAAATC TTGATCACAAGCCTGGTTTCTAATTGTCTGCTACTCAAAGAGCTCAGCTTATTTTCATGCACATTTAAATCATCGACCTT GAAAATAGTGAGTTCATCGTTATGCCATCTCAATCTTAAGGGGTGCAGATTTGCACCTGAGACTTGGCCTTTTCTTTCTT TGGATTGCCTGAAACTCACTTCCTTTGAGTTTGACATGTTTAGTTTGCTGAAGCGCATATCAATTAATGCACCTCTACTT AAGAGCATTTACTACGCTAGTTACCTGCGTCTAATACCTAATTCAATTGCCCGCTTTCCATCTCTTCCTCAGCTTGAGAT TCTGACTTTGCATGTCTGCTACTCTCCTCAGGTTAGCTTGATAAACTGTTAGAAACAGTGAAAATTTTGTTGTCTTTTTA CATTTTTATTTTATTGAAAATTTTAAATGTCTTTGTTCAGGCAAACATTTCACTAAAAGATACTTCGGCCCTGGAAAATG TCAGACAATTGAACCTGTCCCTTTATATGGCACATTTGTATGAAGATAGCGAGATTCATATTGGGTGGATTTTAACCATC CTTCAAGCTTGTCCTGTTCTGCAGAAACTTTCAGTCATGGTGAGTCAATAAGGTTGTACACATGTCTTATTTTGTTTCTT ACTCCAAAATTCTTAGAGACTAGTGTACCTTCTTCTTTCCAAATCTATCCATGGACATGATTCGAAAGAGCAGTTGCAAG TTGCAACTCCTCATCCAAGTTTCTCAGATTGTGCATTTTCACCATCATTCAAATTATTTATAGTAAAATTATACTACTTT GCAGTTTATAGGTCCGAAGTTTTTTACAGAACACAGAGATATTCAAGATCATGGAATGTCCTATCACAATGAGATCAAAG TAGTTGAAATGAGGGGCTGTGTGGGTAACTGGTATGAAATTGAGCTCGCTAAGAATATTTTAAAATATACCAACAAACTT GAGCAAATAGTTTTGAGTCCTTATTGGAAAGACGGAGACATGCATGGTTGGAAATCTCATCCAAAGTGGTTTCAGAATGG GCGTGAAAGAACTCGTGAGAAGCTTAGTCAAGAAGTTGGATGGGCAGAAGTTATACGCATATAAGAGTTTATAACTTCTG CATCTTTTATGTTTTATCATTTGTTTTGTTATTTGATAGACTAGTATGATTAACATTGCTGATAATTTCATTTCTTGTTA TTTATCCCAATTATGTTCATTTGACTAATATGTACAATTATATGTAAGGTGACAGCTTCTAAAGTGTGATGTGAAC
CDS sequence (LotjaGi1g1v0503800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTATATTAGTGAGTTGCCTGATTGCATCCTGGCTGATATCCTATCAATGTTATCCATGAAAGATATGTTAAACAC TTGCTTACTATCTAAAAGGTTGTGCAACCTCTGGCATCTCAGGAGAGATCTCAAATTTGATCAGCTCAATGTGCTTGGAA GTGATGAAGAATTGCGACGAGCTGGATATTATGTTGATGTTCTGAAAAATGGTAATCAATGTGAACATCTTCATTTGGAC GTGCTTAGGGATGAATTTGTGAGACGTGTTGATCAGTTTGTGAAGAATTTTAAAGGTGACATAATTGATTCTATCGTGGT GCAGTTCAATTTAAACCTTGCAGAGAGTAACATCATTGATCAATGGATCCGGTTTGCAATTTCAAAGGGGGCGGGAAGAA TTGATGTGCTCTTTCTACCAAGGCGGTGTTATAGTTCCAGCAATTGTTACAAGTTTCCCTTTGGCTTATTTTCTGAGTCT AATAATTCAGCACTCAAGCATTTGCATCTGCTACATTGTCTCGTTTGTCATCCAGAAAACTCTGACCTTTTTCCGTTGAC AAATTTGAGAAGTTTAGTACTTGAAGAATCACATGTGGATCAAATCTTGATCACAAGCCTGGTTTCTAATTGTCTGCTAC TCAAAGAGCTCAGCTTATTTTCATGCACATTTAAATCATCGACCTTGAAAATAGTGAGTTCATCGTTATGCCATCTCAAT CTTAAGGGGTGCAGATTTGCACCTGAGACTTGGCCTTTTCTTTCTTTGGATTGCCTGAAACTCACTTCCTTTGAGTTTGA CATGTTTAGTTTGCTGAAGCGCATATCAATTAATGCACCTCTACTTAAGAGCATTTACTACGCTAGTTACCTGCGTCTAA TACCTAATTCAATTGCCCGCTTTCCATCTCTTCCTCAGCTTGAGATTCTGACTTTGCATGTCTGCTACTCTCCTCAGGCA AACATTTCACTAAAAGATACTTCGGCCCTGGAAAATGTCAGACAATTGAACCTGTCCCTTTATATGGCACATTTGTATGA AGATAGCGAGATTCATATTGGGTGGATTTTAACCATCCTTCAAGCTTGTCCTGTTCTGCAGAAACTTTCAGTCATGTTTA TAGGTCCGAAGTTTTTTACAGAACACAGAGATATTCAAGATCATGGAATGTCCTATCACAATGAGATCAAAGTAGTTGAA ATGAGGGGCTGTGTGGGTAACTGGTATGAAATTGAGCTCGCTAAGAATATTTTAAAATATACCAACAAACTTGAGCAAAT AGTTTTGAGTCCTTATTGGAAAGACGGAGACATGCATGGTTGGAAATCTCATCCAAAGTGGTTTCAGAATGGGCGTGAAA GAACTCGTGAGAAGCTTAGTCAAGAAGTTGGATGGGCAGAAGTTATACGCATATAA
Protein sequence (LotjaGi1g1v0503800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDYISELPDCILADILSMLSMKDMLNTCLLSKRLCNLWHLRRDLKFDQLNVLGSDEELRRAGYYVDVLKNGNQCEHLHLD VLRDEFVRRVDQFVKNFKGDIIDSIVVQFNLNLAESNIIDQWIRFAISKGAGRIDVLFLPRRCYSSSNCYKFPFGLFSES NNSALKHLHLLHCLVCHPENSDLFPLTNLRSLVLEESHVDQILITSLVSNCLLLKELSLFSCTFKSSTLKIVSSSLCHLN LKGCRFAPETWPFLSLDCLKLTSFEFDMFSLLKRISINAPLLKSIYYASYLRLIPNSIARFPSLPQLEILTLHVCYSPQA NISLKDTSALENVRQLNLSLYMAHLYEDSEIHIGWILTILQACPVLQKLSVMFIGPKFFTEHRDIQDHGMSYHNEIKVVE MRGCVGNWYEIELAKNILKYTNKLEQIVLSPYWKDGDMHGWKSHPKWFQNGRERTREKLSQEVGWAEVIRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 49 | 49 | 10.319 | ||
| SUPERFAMILY | 1 | 44 | 44 | 2.22E-7 | ||
| Gene3D | 3 | 339 | 337 | 1.5E-19 | ||
| Pfam | 4 | 39 | 36 | 1.2E-4 | ||
| PANTHER | 5 | 452 | 448 | 1.1E-39 | – | |
| PANTHER | 5 | 452 | 448 | 1.1E-39 | – | |
| SUPERFAMILY | 159 | 371 | 213 | 2.75E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0503800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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