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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0505100 |
| Transcript ID | LotjaGi1g1v0505100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polypyrimidine tract-binding-like protein; TAIR: AT3G01150.1 polypyrimidine tract-binding protein 1; Swiss-Prot: sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1; TrEMBL-Plants: tr|K7LFQ1|K7LFQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0505100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102302265..102309845) extracted from Lotus japonicus Gifu genome v1.2.
AATAAATCGAAAAGGGTGTGCCGCTGGGTGCAGCTGCAGCAGAACAAATCTCCACCACGGACTCTGATTGCATCTACTGA CCGATACCAGAACAAAATCCACCACCACAATCATTCTCTCTCATATTTTCCCGGGAAAATCTCTCTACTTTTCTCGGAAA CCAAACACCCTCTTCTCCCATCGGAATCTACAGTGAATAGCTATTACTATGTCAAGCTCAAGCCAACCCCAGTTCCGATA CACTCAAACCCCTTCCAAGGTTCTTCACCTTCGCAACCTTCCATGGGAGTGCTCCGAAGAGGAGCTCATTGAGCTCGGTA AACCCTTCGGTAAGATCGTCAACACCAAGTGCAATGTCGGCGCCAATCGCAACCAAGCTTTCGTTGAATTCGTAACTTCC CTGAATCCCTTTATCTCATTTCGTTCTTTCAATTAATCAATCATTGAATGAAATCAGGGTTTTTTGAATTCTCATTTAAT CATGTATTTTTTCACTGAATTTGCATCAATCAGTATCTTTAAGCTGATATTACAAGGTTGTTCATTATCATGTACTTAGG GTATCGAAATTAGGTCTTTTATGGGGTACTGCTGATTTTGACTTCTATGATTATTTTCCTTTAGACTAGTTTGATCTTCA AATGATGCATCAGTTATTTTATATTTGAGCTTTTATATTTTCAAATTAAGCATGCAACTAATATATCTTGCTCCTAGCCT TATCAATGTAATGATATAATTGTAACTGAAATATATATCGAATAAAAATAATAAGATTTTGTGAGTGTCAATGAATGAGT TACAAACAATTAGGATAATCTGCTAATGTTTGTACAAATATAGTTTTTTACAGACAGTTAGGGTTTTGAAAGAAATTAAC CAACTTGTTATTGTCGGGTTGGCAAAGTGAACAACTTTTTGGATTAACTGAAACCTGGAAATTATGAAGAAATCGCGTAG GCATAGTCACACATAAAGCAAAGGTTCTCATGGCTAAATGTGGTTTAGCCATTGCTTTAAACTAGAATGATGAGTTCATA TTGCGTTTGAAGTTCAATCTGCGGCTGTTCGTGAATAGAATCTCTTTGTCTATTTAATAATGTAATAATCAAGGAATTAA ATAGATAAAAGCAATATAACATAAAGGGTAGTCAATGCCAGCCTGAGTGGAGCTTTCCCACTCCCATGCACTCATGATTG AGTGTTTTAGCTAGAGATTGCGGCCCTTCATAGACATCAGTGGTGGCCACATCAACTGTTATTATGTTTTCTGATTTAGA TTTGATTAGGTGGTGGATTAGATCTTGCCTTTGAACCTCTAGATCAGAGAACCCATTAACGTCGAGCTGGGACCCAAAGT CCCATCGCCGGAATTTAATCCACGTGCGTGGCTGTTCAGTTTTTCCTTCATGATGGATGATTTAATATATTGGGGATATT GAGCCTATCATACGATGAAAAAAGTTTGAATCTTAAACATCTTTTGTGCTAGTGGTCACCAGTTTAGCTATTTCATTTTT CTTTCCCTTTGATTAGTATTATAAGTGGCTGCCAATTGTTTGAGGATGCATGTCCTTTTATTTGATTATACCCTGTCATT TTCTGATTTTCCAACTCAGATTTCTGAACTCTCTAATATACATGCTTTACCAGGCAGATCTAAATCAAGCCATTTCGATG GTTTCATATTATGCTTCATCTTCAGAACCTGCTCAGGTCCGTGGTAAAAGCGTTTATATACAGTATTCTAATAGACACGA AATTGTGAACAATAAAAGCCCTGGAGATATTCCCGGCAATGTGTTGTTGGTCACTATTGAAGGTGTGGAAGCTGGGGATG TGAGCATCGATGTTATCCACTTGGTAAGTACTACTGAGTTGATTTTGTTCTCCTCTGTGTGATTTTGTTGGCATCTTCCT TAGATAGAAGCATCTTGTGAATTGTGATGCTTTGTTTTTTAACATGTTTATTTTTAAACTTGGTTTAGATCTACTTGTTT TAATGCTTATGTATGAAGACATTGTTTGACAACATGCCAAAAGAAGTCATGATCACAATAAAACTGATGTTAATTTTGAA GTAAATGTAATGAAATTCTTAATCTATGAATCCGAGAGTGACTTTTAATAACTTTCAGAAATATCTGTCTTTCTGGATTG TGCAAGTTCTTTTGAAATGTAAAAGTATGGATTATTTTGAATGTGCTTTCATATCACTTGACACGATTCTGACACAGACC CACACATCTTTGCTCTCACTCTCACACTGTCACGCATCATTGCTGTCTGCTCTTATTGGCACGTCTATGCTCATACCTGA AAAACTCAAAGTTATCCGTTTAGCTTCTCCCACATCTCCTCTGCCATCTTGGTGAATGGCTCTTTTCCGGTGAATGGGTC ATCTCGGACAAACTGCACATCTCTAGTGAACAACCCATGCTCTTCCTCATTTCCTTTTTTCCGTTTCCCTATTTTCTGAA GTCTCAGTATCTGCTCTGTCACTTGCTTTGTTCTCTATTCCTTTGTCTATCTCCATCTATTCCCTTCTCTGCTCTGTCCT ATTCATACCTTTCTCTGTGATTCTGTCGTCTTTGTTCAGTGGTTCAAGGACTTCTAATAACAGTACTTTTGAGGAACTTT ATTTATTGCAATATGTTTCTTATTCATTTTTCTTGACTTAGGTTATTAGTCTATTATATTCTGCATTTATATACATTTTG TGATTGTACAATGTTCTATTATAGTAGGCATACTTTCACCACAGGCTGCAATGCCATCCACCATACTGTTATAGCTAATT TTAGGCTTGTCTTCACTAATCACCATCTGCCTTAAGAACATTGGTGCCAGTACGTTTTCTTAGTGGATATGTGCCCAATA CTAAAAATTTATTGTTAATATTTATTAAGTGAAACTTGAAACTATGTAATTTTTGTAGTTATTAAGTCCTACATTATTAA TTCTTGCATATCACCTTTTTTTTTCAATAAAAAGGCCTGTTCCTCTTGCTTTAGGATTTCACATTTCAAAATGTGAATTA ATTGAAGTTTTAAATTATTTAAGATAACTTTAAATAAATAGTAAAATAAATATCAGTGAAGATATGTAATTGAATTTGGA AGTATGATATGGAGTTGAAAAGAGATTCCATTCACATTGCTTTTAGGAAAAATTTATGTCCACCTGAATCATTCTGCGAC TGTTTTAAATGAGAAAATATTTCTGACTGAACCCTGCTTTATACTTGATTTCGTCTGATGTTTTCTTGGAAAGATTTTTA AGTCTCGAGCAAATCTTATATCCTTTTTAAATAATTTACTTTTCCCTGTTTGGAGGGGCAAGGGTTATCTCATGAGTGAT TGGCGAGGAATCTGGGTTTAATACCTTTTATTCATATGCAGCTCCATCGTTTTTCATATAGTCTTGTGATCTTTTTATCT TTTACCCTTTTATTTAGAGTTAAACAGAATCCTGATTAAATCATATGCCATTTTTTAACTGAAATCGGTTGAATCACAGA TGGTGATCTCTCATATTTAGATACTTTGTCGGAGACAGTTTGGAATTATTATATGGTCATACAACTTTCTAAGGTCACAC ATATAAGTACAGGTGTTATTCTGCACTTCTTTCTTACCTGTTTGAAACTTCTCATTCCTTCATGACATTGCCTTGTCATC TCAACCTTTGTGATGGTTCCCAAACTTGTGCTTTCATATTATCTTCTGACCTTTTTGTTTAAAGAAACTCAATGCGATGT ATGAACTAGTTCTTTCTTCTTAATTCAGGTGTTTTCTGCTTTTGGCTTTGTTCACAAAATTGCTACTTTCGAAAAGACTG CAGGTTTCCAGGTTAGAAAATTATCATCAATTGCACTTTATTCAACATGTCCTTGACTCACTGTAAGTATTAACTTTGTT TTATGTCATGGCAGGCTCTGATTCAGTACACTGATGCTGATACTGCTTTTCAAGCTAGGGACGCATTGGATGGAAGAAGC ATACCAAGGCAAAATTATTTTTGTATTTGCCCCTAACTTCCTCAACCCCATCTTTAATTCTGCTCATAGCTTGACAAGCC ATAAATTTGCTGATTCACTTATGCTTTTGTATTCAGATACCTGCTTCCAGATCATGTTGGTTCTTGTAATTTGCGTATTT CATACTCAGCACATAGAGATCTGAATATCAAATTTCAATCAAATCGCAGCAGGTAATGGTGGAAAGCAAGCGAGACAACC ATCATATATTATTCTTCAGTTGTATTTATTGGTGGTTTATTTTCTAAGATACTTACGCAAATTTTAAAAGTTCTTGTATG TAATGTTTTGTGGTGTTATCTTATCCATTGATTGATATATGTGCTTTTATCATCTAGGGGTTACTGAAGCTTGGTAGTCA GGATACAGTTGAGTTGCCATGGCCACTTAGTAATTTTCTTGATCATTTTCCAGCTGCTTGATGTATTTTCTGTCAATATT GTTGAAATCATTTTTATGTTATTGAAATGCATTGAGCAAGATTATTTTAAATAAGTTATATTGGGGATACAGTACTAATT ATTTGTACTTGTTCAGTTGTTCTCAATCTAATCTAGTTGCCATCTCCATATTTGGAGGCGACTTTGATATTGACAATGCA CAGCTGCCTCGTAATTTTGTTCTATGTACCAAATAAGAGTTGTTCAAACAGCTTCTTGTTTTGTAAATTTAGTTCTTTGG TTTTTTTTTTTTCGTGTTTGGCACGGGTCATCATCAGGTTTTACTCTCTAAAGTATCTTCTTTTATATTAAATTTTTTTA TCTGATTTTTTCCCGTAATACGAGCTTCCTCACTTGAAGCCCTGTTCCCTAAATCAGGTTACAGTCTAGATGTAAGGAAG AAGAAATAAAAAATTGTGAAAATCTGTAATTGCCAATTCTTTCGTGATTTTACTTGGCTGTTTGGGGAACATTTATGTTA AGAGTACTTTGATGTTGTGGCATTGAACTCTAAGAAATTGTTAGTGAATCATAATTGTACAAAAAGCATATTTTTTGTAC TAAAAATCTCTTCTATCTTTACCTTTTGAGAAGTACATGAATATAACAGGGTTGTCTGTCTATTCATTCTTGTGTTTTAT CTAGCCAGTTAACTGTTTTGGTTCAATGGCTCTAGCATCTAGCAAGATCTCTGGAGATGTATGTTTAATGTACTGATAAT TCTTAAATCTTCGATTCAGGCATAACGTTTTTCTAATGTGCACGGCTAAGTTTCTATTTTATAAATTTCATCTTTCAGAC GTTAGTCTTATTAGTGATTTTTCCGTGACCTTTCAGGGACTATACAAATCCTATGCTTCCTGTTAATCTTACTGCTATTG AAGGGGCAGGACAGGTATTTTATTGTTTTTTCCTTCAATTATTTTTTGCTTTTCCTATTTTTAGTACATGCTAATAGTTT ATAATCTTCAGCCTGCTGTTGGTCCTGATGGGAAGAAGAAAGAACCTGAGAGCAATGTGCTTTTGGCTTCCATTGAAAAT ATGCAGTATGCTGTTACAGTTGATGTCCTTCACACGGTGAGAATTTGTATTTTTCAGTAAAACTCCCAAAGTTGTACGTG AATTAATTTCTTACATGTTGGTCCATCTTTACAGGTGTTCTCTTCATTTGGTACTGTCCAGAAAATTGCTATTTTTGAAA AGAACGGTCAAACCCAGGCACTGATTCAATACCCTGGTATTAATCCTATTGGACTGTTAGTTCTCGTTCTAGTGCACTGG GTCCCTTATTGTGTAATTTATATAGTTTATATGCCTATTATCTTCGTTGTATAGGTATTTTGTGTAATTTGATTTGGAGG TTCCTGATATGCTTAATGCTGGAGATTGTAATGCTTATGCACCAGTGTTTGGACTGAATGGTTGGTAGCTAGGAACAGAT TGCTGTCTTTCAGTGATTTTGACCATTTCACACAAATTCTATTACATATTTCATTCTTTCTTATTATTGATCATTTCATT AACCACATGCTTCTGCTCCAATGCTGAATGGATGGTGTTTTACGCTAATAGATAGAGATTAATTACCGTGCTTTTCTATG ATTTTGAGATAAACTGGATCTTATTCTGAGGACTAGATGGTATTTTTAGAGGAACTATCATCAATCATTAATGATATGAA AAAGAAGCTGGTCATTTTTTTTTTGTAGTTTTTAGCACCTCTATCTACTTGTATTATCTTATTTATGTTAGTTGAGGAGA ATTTCTTATACTCTTATGTGGCCTTCTTATTTCCAACTAATAATACATGATTGTTTCATAATTTTTATTTACTCTAGACA TCATGTAGAGTAGGGTTCATTTCATGTGGCATACTCAAACACAAGTTGCAGGGGAGGGAACTGGGTACCAGATTGGTTAG CCTTCCAGTTCCCTTTTTTGGACAAAGCATGTTTTTGTTTTTGATCATGTGTACACATTTTTTCGCAGATGTCATAACAG CAGCTGCTGCTAGAGAAGCTTTAGAGGGACATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTAACATATTCTCGT CATACTGATCTCAATGTGAAGGTATATAAACGTGTTTTTGAGTTAATGTTCATGAGGGGAAAAATGAAAGGGGGTGGGGG GGGGGGGGGGGTGGGGAATTTAAGATATCCTTAGAAGCAATGTGGACACTTTCTTAATCGGAGAGAGATTTATTCTTAAA TGTATGCTTCTTGACACTTGATTGACCTTCTATAGTAATTTGTTTAAGATAAGTGAGTGATTATCCGAATATGATTTTAA TACTATATGTTTTGGTTTTAGGCTTTCAGTGACAAAAGTAGAGACTATACAGTGCCAGATCCTAGTGTGCTTTCATCACA AGTTCCTGCCACAGCCTGGCAAAATCCTCAGGCTGCACCTATGTACCCTGGCAGCGGCCCGGCTTATCAGACTCAAGTTC CTGGAGGACAAATGCCATCATGGGATCCAACCCAGCAGTCATTTAGACCTAGTTATGGATCTGGAGGCGGTGCTTATCCT GTTCAAACTGGTGCAGTTCCTTCAATGCCTGCATATCCGCCGGCAGGCGCTGCCGCCTCCTCACAGCCTGGGGCTCAGCC AAATGTGAGACCTGGTGGTGCGTCACATCCAGGTCCACATTATTATGGTTAGGAAGTCATAGCCTTACTTCTCTCTCAAT GAAAAGAGAACGGTTTTGATGGATGAACGAGCCATGATATTAACAAGTTGTTATTTGGATGAAAAATTGTTCATTATTTT TGTTGTCATCTTAATTTTATCTTGCAAACAAAGCTTAGCAATCGTATGATATACTCTCTACATCGTGTTTCTTTTCTATT TTTTTGTCCATTTTGAAGTTCTTGTACTTTTCATGGAATATTCACATAGGTAAAACGGAGGGGTTAAACATCTTTCTCTA TTTGACTAATCCAAATATTTCAAACTTAACTGAGTCAATTACCCACAGTAGCTACATAGTTACCATGTGAAACTTTGGAC ATTGCTGTTTCAACTTACGTGTCATCGCATCGAAGTTGAAGCCATCAGATCTCTAGATGAG
CDS sequence (LotjaGi1g1v0505100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAGCTCAAGCCAACCCCAGTTCCGATACACTCAAACCCCTTCCAAGGTTCTTCACCTTCGCAACCTTCCATGGGA GTGCTCCGAAGAGGAGCTCATTGAGCTCGGTAAACCCTTCGGTAAGATCGTCAACACCAAGTGCAATGTCGGCGCCAATC GCAACCAAGCTTTCGTTGAATTCGCAGATCTAAATCAAGCCATTTCGATGGTTTCATATTATGCTTCATCTTCAGAACCT GCTCAGGTCCGTGGTAAAAGCGTTTATATACAGTATTCTAATAGACACGAAATTGTGAACAATAAAAGCCCTGGAGATAT TCCCGGCAATGTGTTGTTGGTCACTATTGAAGGTGTGGAAGCTGGGGATGTGAGCATCGATGTTATCCACTTGGTGTTTT CTGCTTTTGGCTTTGTTCACAAAATTGCTACTTTCGAAAAGACTGCAGGTTTCCAGGCTCTGATTCAGTACACTGATGCT GATACTGCTTTTCAAGCTAGGGACGCATTGGATGGAAGAAGCATACCAAGATACCTGCTTCCAGATCATGTTGGTTCTTG TAATTTGCGTATTTCATACTCAGCACATAGAGATCTGAATATCAAATTTCAATCAAATCGCAGCAGGGACTATACAAATC CTATGCTTCCTGTTAATCTTACTGCTATTGAAGGGGCAGGACAGCCTGCTGTTGGTCCTGATGGGAAGAAGAAAGAACCT GAGAGCAATGTGCTTTTGGCTTCCATTGAAAATATGCAGTATGCTGTTACAGTTGATGTCCTTCACACGGTGTTCTCTTC ATTTGGTACTGTCCAGAAAATTGCTATTTTTGAAAAGAACGGTCAAACCCAGGCACTGATTCAATACCCTGATGTCATAA CAGCAGCTGCTGCTAGAGAAGCTTTAGAGGGACATTGCATATATGATGGTGGCTATTGTAAGCTTCATCTAACATATTCT CGTCATACTGATCTCAATGTGAAGGCTTTCAGTGACAAAAGTAGAGACTATACAGTGCCAGATCCTAGTGTGCTTTCATC ACAAGTTCCTGCCACAGCCTGGCAAAATCCTCAGGCTGCACCTATGTACCCTGGCAGCGGCCCGGCTTATCAGACTCAAG TTCCTGGAGGACAAATGCCATCATGGGATCCAACCCAGCAGTCATTTAGACCTAGTTATGGATCTGGAGGCGGTGCTTAT CCTGTTCAAACTGGTGCAGTTCCTTCAATGCCTGCATATCCGCCGGCAGGCGCTGCCGCCTCCTCACAGCCTGGGGCTCA GCCAAATGTGAGACCTGGTGGTGCGTCACATCCAGGTCCACATTATTATGGTTAG
Protein sequence (LotjaGi1g1v0505100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSSQPQFRYTQTPSKVLHLRNLPWECSEEELIELGKPFGKIVNTKCNVGANRNQAFVEFADLNQAISMVSYYASSSEP AQVRGKSVYIQYSNRHEIVNNKSPGDIPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQYTDA DTAFQARDALDGRSIPRYLLPDHVGSCNLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNLTAIEGAGQPAVGPDGKKKEP ESNVLLASIENMQYAVTVDVLHTVFSSFGTVQKIAIFEKNGQTQALIQYPDVITAAAAREALEGHCIYDGGYCKLHLTYS RHTDLNVKAFSDKSRDYTVPDPSVLSSQVPATAWQNPQAAPMYPGSGPAYQTQVPGGQMPSWDPTQQSFRPSYGSGGGAY PVQTGAVPSMPAYPPAGAAASSQPGAQPNVRPGGASHPGPHYYG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 428 | 428 | 2.1E-220 | – | |
| PANTHER | 1 | 428 | 428 | 2.1E-220 | – | |
| Gene3D | 2 | 105 | 104 | 1.4E-24 | ||
| SUPERFAMILY | 3 | 106 | 104 | 5.1E-19 | ||
| CDD | 15 | 95 | 81 | 8.16771E-57 | ||
| ProSiteProfiles | 17 | 95 | 79 | 12.066 | ||
| SMART | 18 | 91 | 74 | 1.7E-8 | ||
| Pfam | 21 | 70 | 50 | 6.4E-8 | ||
| Pfam | 107 | 175 | 69 | 0.034 | – | |
| CDD | 109 | 203 | 95 | 1.93287E-59 | ||
| Gene3D | 109 | 220 | 112 | 1.6E-24 | ||
| SUPERFAMILY | 112 | 209 | 98 | 1.61E-8 | ||
| Gene3D | 239 | 343 | 105 | 5.8E-30 | ||
| Pfam | 242 | 320 | 79 | 4.0E-8 | ||
| ProSiteProfiles | 242 | 322 | 81 | 8.603 | ||
| CDD | 242 | 338 | 97 | 2.68539E-64 | ||
| SMART | 246 | 316 | 71 | 0.074 | ||
| SUPERFAMILY | 248 | 342 | 95 | 1.34E-15 | ||
| MobiDBLite | 372 | 397 | 26 | - | – | |
| MobiDBLite | 372 | 393 | 22 | - | – | |
| MobiDBLite | 409 | 444 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0505100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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