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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0505300 |
Transcript ID | LotjaGi1g1v0505300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain protein; TAIR: AT5G61430.2 NAC domain containing protein 100; Swiss-Prot: sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100; TrEMBL-Plants: tr|A0A151TCA6|A0A151TCA6_CAJCA Protein CUP-SHAPED COTYLEDON 2; Found in the gene: LotjaGi1g1v0505300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102321740..102322693) extracted from Lotus japonicus Gifu genome v1.2.
GGGTTGGCTAAAACGGGTGAAACAGAGTGGTATTATTTTTGTTTGAGACACAGAAAAAACCCAACTGGTTTAAGAACAAA CAGAGCCACTGATGCTGGATATTGGAAGGCCACAGGCAAAGACAAGGAGATAATAACCATGGAAAATGCTTTGATTGGAA TGAGGAAAACACTGGTTTTCTACAAGGGAAGAGCTCCAAATGGTGAAAAGACCAATTGGGTTTTGCATGAATACAGATTG GAAGCAAAAGCAAAACATGCTGAATATAATAATCTTCCTAAACCTGAAAAGGTATCAAGGTTTCCCTCTGCTTTTTCTCT TTTTTGTTCTGATTTGCTCTGTTTTTGCTCTGGCTCAAGGTAAACATTTGCTAATAAGGTTCTTAAGTTTGAGTTGATTT GATTTGTACCCTTTTTAGAGTGAATGGGTTATCTGCAAAGTCTTTAAGAAGAGTCCTTGTGGAAACAAAATACATATTCC AACATTTGGAAGGTTCAACTCCTTTAGAGAGGATCAGGAAACACATGATAACATAGAAGCTCCTAGCTTGGACTTTTCAT CTTCTTTGGATAAAGCAAATCCTGCATTCTCCAACCAATGCACAATGATGACACATCAAATTGGGAAGTCACAATCACAG TGCTCAAATTATTTTCTCCCCGAAGAACATTCCATGTTCAGGAGTGGGAAGCAAAATGAGAATGAGGAGTTTTCTCTGGG AAGAGACTTTGATGCTGATAGTGATATCCCCTCTTTGGTATACAACAACAACAATGACATGTTTCAAAGGTGGTTCGGGA ATCAAGAGCATTCTTCAGCTTCTTCAGGGAATTTGGACATTGATTGCCTGTGGAATCAAATCACTGATTAAGGCTGAAGG AAGATTTTTTAGTTTATTAAAAAAGTATGCCATGTACATGATACATGTAATTAATTGATTACCTGGGAATTGCA
CDS sequence (LotjaGi1g1v0505300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAATGCTTTGATTGGAATGAGGAAAACACTGGTTTTCTACAAGGGAAGAGCTCCAAATGGTGAAAAGACCAATTG GGTTTTGCATGAATACAGATTGGAAGCAAAAGCAAAACATGCTGAATATAATAATCTTCCTAAACCTGAAAAGAGTGAAT GGGTTATCTGCAAAGTCTTTAAGAAGAGTCCTTGTGGAAACAAAATACATATTCCAACATTTGGAAGGTTCAACTCCTTT AGAGAGGATCAGGAAACACATGATAACATAGAAGCTCCTAGCTTGGACTTTTCATCTTCTTTGGATAAAGCAAATCCTGC ATTCTCCAACCAATGCACAATGATGACACATCAAATTGGGAAGTCACAATCACAGTGCTCAAATTATTTTCTCCCCGAAG AACATTCCATGTTCAGGAGTGGGAAGCAAAATGAGAATGAGGAGTTTTCTCTGGGAAGAGACTTTGATGCTGATAGTGAT ATCCCCTCTTTGGTATACAACAACAACAATGACATGTTTCAAAGGTGGTTCGGGAATCAAGAGCATTCTTCAGCTTCTTC AGGGAATTTGGACATTGATTGCCTGTGGAATCAAATCACTGATTAA
Protein sequence (LotjaGi1g1v0505300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENALIGMRKTLVFYKGRAPNGEKTNWVLHEYRLEAKAKHAEYNNLPKPEKSEWVICKVFKKSPCGNKIHIPTFGRFNSF REDQETHDNIEAPSLDFSSSLDKANPAFSNQCTMMTHQIGKSQSQCSNYFLPEEHSMFRSGKQNENEEFSLGRDFDADSD IPSLVYNNNNDMFQRWFGNQEHSSASSGNLDIDCLWNQITD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 62 | 62 | 23.071 | ||
Gene3D | 1 | 66 | 66 | 2.0E-19 | ||
PANTHER | 2 | 98 | 97 | 1.3E-51 | – | |
PANTHER | 2 | 98 | 97 | 1.3E-51 | – | |
SUPERFAMILY | 3 | 62 | 60 | 4.05E-17 | ||
Pfam | 5 | 34 | 30 | 1.0E-6 | ||
PANTHER | 88 | 193 | 106 | 1.3E-51 | – | |
PANTHER | 88 | 193 | 106 | 1.3E-51 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0505300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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