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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0506200 |
| Transcript ID | LotjaGi1g1v0506200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ERD (Early-responsive to dehydration stress) family protein; TAIR: AT3G01100.1 hypothetical protein 1; Swiss-Prot: sp|Q8GUH7|CSCLC_ARATH CSC1-like protein HYP1; TrEMBL-Plants: tr|A0A1J7HWT6|A0A1J7HWT6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0506200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102440708..102447336) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTTGTAATATTGTGCAGTTTAAAAGTATTTACTTTTGGTTCAATAGTTGGTATATTCTTTCTGCTTCCAATTAACTA TATGGGGACTCAGCTTCGTGATAACTCTGATTTTCAAAAGAAGTCTCTGGATGCCTTCAGCATTTCTAACGTGAACAATG GCTCAAACAGGTGAACATTATCGATCAAGATGGTCTTAACTCTTGAGGCATTATTTATTCATGACAAAGATCAATATTTA ATTCATATCTGGAACATTAATTTATTGGTTCTATTGCTATTTAGTTTGGAAAGTCTCATTTTCTTTAATTGATGAATCAG CTTTTGATTTGTGATGTCTTTGTTATGTTTATATTATTTGTTGGGATATGTTTTTTGATGATTAGAACTGAAGAAAACCA ACATATGTCATCTCTTTGTTCCTCCTATAAATGGAAGATGAAGTTTTGATAACTAGGCTGATTTTAAGTACTTATTTCCT TCTCCAAATTATACATGTTCATCCTAACATTTATGACAAGATTTTATTTGTTTGCTGTTGTAATTTCACAACTCATTTGA ATGAACATTGTCATGAGTATTCTTGAAATTTGATTCTTTTTACTTAATTTTTATCTAAGTCATGGGAACTCTGATCGCTA GATTTGGCCTTTCTCAAGGTTATGGATCCATTTTTGCGCTGCATATGTTTTCACGGGAGGTGTTTGCATTCTTCTTTATC ATGTAAGTTATTATTGTTCATGTTTGATTTATACTACATACGGTCTGATTTTGCCTGTTCTGTCAAACTATAAGATAGTG ATTTCATGCTTTATGTTAATATCATATTCAGGAGTATGCATATATTTCATCAAAAAGAATTGCTTGCTTTTATTCATCCA AGCCGGAGCCTCATCAATTTACTATATTAGTACGGGGTATTCCTGTTCCGCTGGGAAGCACTTGTAATGATGCGGTTGAG CGCTTCTTTCTGGAGTATCACCCTTCTACTTATCTTTCGCATTCGGTTGTCCGTCGAAGCAGCAAACTTCAAATTCTAAC TGTAAGCAATTTTCTGTAGTTATAAGTGATTCAATTTAATCCTGTTTTTTCAGTAAAAGCTTAATCTTCTAGGTTCACTG ATCTTTAGACAGGTTTTTTCATAAATAGCATAGTTATCTCTTTCTTTTAAAGAAGATTGCACATTAACACGTTACGTTAT TTTTCTGTAAGAATTCTCTTTTTGGAGGCTGAGAGATGTTGGTGATTAGGGTTAGCATCAGTCACTGTCTCACTGCATGT CTTCGTGAAGTTTTGAACTTATTAGAAACATACAGTTGTACTAACTTTAGTTTTTTCTTTCAATATTAAGACCCTGTTTG GAAGAGCTTATCTTATAGCATATGCTATTATGCAAGTGTTTGGTAGAGCTTGTGTAAATAGCTTATGACCTACCGATAAG CTGTTTTGACTTTTTTTCATAAGTGCTTCAGATTAGCTTATGAATAAGAGCTTATGCTTACCTTTAACTTATTTTCAATT TATTTTAATAAGTATCTCAAATTAGCTTATGAATAAGGGTTTATGCAATAAACGCTTAATTAAGATGTTTATCCAAATGC ACCCTGACTATATTGTGTTTTTGACTATGCAAATCTCAATCCTTGTAGACTGATGCAGAGAGACTCTACAAAAGGCTTAC CAAACTGAAACATAAAGATAACACAACTTCCAGACATAGGCGTGATGGATGTTTTGGACTTTTTGGACATAAAGTTGATA CTCTAGATCATTATGAAAAAACATTGGGAGACATTGCTGATAATGTGAGAATAGAACAGTCTTCAATGTCATTGGGAGGA AAGGTAACTATCATGTTCTAGGCATGAATAACCTTCAAGACTTTTGAGTGATAATTAATTGTATTTCCCCTAAGGCTGTT TTAATAACTGGTCTGGTAAGGTTTACACCCTATCTAACACCACAGCAAAATATTCAGATTATCATTTTGAACTGAATTTT TTCTGTTTTGTTAGAAAATTATGCTTGATTTACTGTCAGTTTCTCCAACTTAAACCAATAAAGACAACTTAGGCCCTGTT TGGATGATCTTATCTTATAGCATAACCGCTTGTGCAAGTGCTTGAGAGAGCTTATGCAAATAGCTCATGACCTACTTATA AGCTGTTTTGAGCTTATTTTCTTAAGTTGTTCATATTAACTTATGAATAAGAGTTTATGTTTTCACATTATCTATTTCCA GCCTATTTTAGTAAGTTCTTCAAATTGGTTTATGGATAAGCGCTTATTTCTGTAAGAGCTTAATCAAGTTGTTTACCCAA TTGCACCCTTAGAGTACTCAAGCTTGGTTTTGATTTTAAATAACCTTCATCTTCTGCATCAAATTTTCTGTTGACTACTA GAATTGGATTATGAAACGTTTTTGTAATCCTAAAGTACATGTAGTTTTTTTATGGTTAAGTTGAATATCTAATACATCCA CTTGTTTAATTACCACTTTCACTTCAAAAGGAAGTCCCAGCTGCTTTTGTCTCATTTAAGTCACGATTTGGTGCTGCAAT AGCTTTAAACATTCAAGAAGGTGTCAATCCTACAGACTGGATTACTGAGCAAGCTCCAGAGCCTCATGATGTTTATTGGC CTTTCTTTTCTGTCACGTTCATCAAAAGATGGATCAGCAAGCTGGTGGCTTTTGTTGCTTGCAATGCTCTTACAATTCTA TTTTTGATCCCAGTTGCATTAGTACAAGGTCTTACCCATCTTGATCAGTTGGAAACCATGTTCCCATCTCTAAGAGGCAT ACTAAGACTGTAAGTTGGAAATATTATCTGTTGAATCTTAGCTTCATGTGCTGCATGCTTAGATCAGCTTCTTTTTCATC AAAACCAATTCAGGCACTCAGAAGATACTGACATAAACTTTTCCCCATAATTGATTTTTGTTTTGTAAAAGGATTTCCAA ACATGTACAAAGAATGCTAGAAGTCAGATTAATATATAAAGTATAAACATGTGTTGATTTGCATTACATGTGAAAAGAGA ATTGTTTGTCAGCCCATATTTCAGTATAACATGAGAATACAATTTTTTCTAGTATTCTTCACGGCTTTGTGCTCGCGGCT TTTTCCACTGGTTTTTTCAAAGGGACTAGTCTTAGAATTTAGGTTAGTTCTAACTCTATCCTAAAATCTAGGTCAGGGAT GAGGATTGCTCTACCCTATATATAGACTTATTTGCCCATATAGCCAATATGGGATCTTAACTCATCCCTTTACACCCAGA GTTGAACATCTGGAGCGTGAAATTGTCAGGGATGGACATCTGCACCGGATGACCCATATATGCGTGGTCTCCAATAAAAG GGTCTAGGATTGACAATGATGCCATCTTACAATTCAGGGTAGGCCTAATTCTACCACAAAACCTAGCTCACGGGTGAGGA TTGCTCAACCTTATATATGGATTTTTTTGGCCATATCTCTAGTCATTGTGGGACCTTAACAATTAGAACTCTCTCTTTGG TTGTGGAAAGTATAGCTTTTCCCTGTGTTTCTTGCTTGCAAGTTGAAAGTGTAGCTTGTTTAAACAGAAGCACTAACACC CTTTCCATGGATTTGCAACTAAAGTAGAGTTTTCCTACATTTATTGCAGGGCAGTTGTGAGCCAAGTTATAACAGGATAC CTTCCGATTCAGATTCTTCAAGTGTTTCTATCCTTTGTGCCACCTATTATGATTATGCTTTCATCCTTGCAAGGACACAT CTCATGGAGTCAGATACAAAAAAGTGCGTGCAGTAAAGTATTATGGTTTACCATTTGGAACATTTTCTTTGCAAATGTAC TATCAGGGTCAGCTCTCTATCGATTGAATTACTTTCTTGAACCCAAAGAGTTCCCCAGAGTACTAGCTGAAGCCGTGCCG GTACAGGTTAGAATATTTGCTGAAGGTTTACAAATTTCTCTAATATTTGCTAAAGGTTTTACCATATTGAGAGGGAGGGA ATACATTTTCTCATTTTGTTGGTGCTATGAGGAAAATGACACATGTTGCTATTTTCTTATCTATACATGTGGTCAACTGG TCATTCATGTATTGTTTCTTGTATGGTTTATTGATATTGTGTAATATACATAGGATGTGAGATTGATAGAATCTAGGGTT CTAAAGTAGTGAGCGAAAGAGAAAATGAGAAAGAAAACTGAATATGAGATGATTTTCATTCATGCTCATCAATGTAGATC ACTATGATATATAGGCAGGTGAGCTCCTCTAACAGCCTCTAAAAATAGTATCTAACTATAAACATAATACAATTAACTAT AACAAACTCAACTGAATGTAAACAACTAACTTAGCTAGCTTTAGCCTCCAGAAGCAGCCCTAGTATATCTCTTTACAAAG ATGCTTTTGCTTATGCACTATATATATTTTCCAGATGCTTTGGAAAAATCATTTGTTTCATGACATTTATTCTCATTTTC TGTAATAGTGGATGAGAATAAGACAGATTGAAGGAGTTGCAGTTCCCATATCATTTTAAGTATTTATATCTGATGTAGTG TATATTTATATAAAATGTAAAAAAAAAAAATTAGCACAGTGGCCATCCTGCTATTCCCTATACAACTACAGTGTTTTCAT GATCAGCCGCTATGCGTCACTATGTGGGATTGACGACACTTCCCTCTATATCTCTTTTATCTACTGATACATTGCAATAC ATATTTACTTGCAGGCAACATCTTCTATTTTATGCATAAGATATTATCCCATGAATTGGATGATATGCATTTGATATCTT TATACTTTGTATTTGGTGCAGGCGTCATTCTTCATTGCATATGTTGTGACATTCGGATGGACTAACATAGCATCTGAACT CTTTCAATTGATTCCACTTGCTTACAATTATATAAATAGAACTTTTATTGGAGATGGTGATGATGATTTTGAGGCACCAT CAATTCCTTACCACAGCGAAATTCCCAGGATTCTTTTCTTTGGTCTTCTTGGTGTAACATACGTCATCCTTGCTCCTCTG ATATTGCCATTTCTCTTGGTATACTTTTGTTTGGGGTACATCATTTACCGCAACCAGGTTTGCATACTGTTTTTATTATT CTTTTTCAATATATACACTCATATTTCTTCATTGTTGTAAAATGTGTACCTAATATAACACGGCAAGTGGATAACTGTTT ATGTAAAGTGCACACTAAAAAAATGTGTTTCATTACTTTCTATCTAATCCCCACCTTGGGAGAAAAGGCTAGTTGTTATT GCTGTTGTATATTTAATTTCCATCTAATCCTTATAATTTTCATCCATGAATTCAAATTATCCTATTTTGGTGTTGGTTCT CTCTGATATGATTCCAGAGGCAAGGTGTGGTCAGTTCATTTTAAAATTCTAATGATATCTCAAATATCTTTGGGTGACAG TTATTAAACGTTTATGTGCCCAAGTACCAAACTGGAGGAGAGTTTTGGCCAACAGTGCACAACTACACAATTTTTTCATT GATACTGATGCATATTATAGTAATTGGGATATTTGGACTGAAGAAGCTTCCACTAGCATCTGGCTTGACTCTTCCACTTC CTATTGTCACACTTCTATTCAATGAGTACTGCCAGAAACGGTTCTTTCCTATATTCAGAGCTTATCCTGCGGAAGTACGT TGGTTTAAAATTAATGATAAGTTTACCTTATTCTTTTCTTGATTATGAGGCCTGTAGGTTTTCCTCTGGCCATATTTTCA TCTATATGCTTTTTTCATTTTTCCTTATTTAGGTTTGAGGTTGTTATTAGTTACTACTAAAACAATTTTCACATGCTCTG ATAAACTGTTTGTTTGGGCGACCTCTAATGAACATTTAACTTCTCATCATTGATGATTGTGGTGATGGCTTCTGATGCAA TGGTTACTATCAGAAAATCCTTGTTACTAGTTAGTTCTTCACTTTGGTCTTCTGGCCAAACTAGGTATTATGCATTGATT CACAACAAAATTACTTGCAGTAAACAGTTAAAAAATGTACCACTGGGATATTAAGTTGGTGTTAGATGTAGAGGAAGATC GGAAGCCTGACATACTCAAAGTCATGAACTTGTAAACAGATAAATTTATTTCAAATTTTTAGTACGAACTATCCTGGTAA GAAATGCTGTAAAGGAAGTATTCATTCCATCTTATATCTGGCCATCTGGGGAATGGCTTGGTTTGGCTCATCAAACTCAC TTTACTTATAATGTTCATTTTGTTGCTAGGTTGGTTTCACCTAAAATGTATGACAATTTATGAGTAGCTACTGTTGCAGT ATACTGATTGAAGCCATGATGATAATTTTTCTCTAGTATTTCCTTTTGCTCTGAAGTCCACATATGGCTGATTATTCTTT TTCCGATTGCGTGTTATTTCTTATCTATTTCTCCCCTTCTGCATTCTTATGAATTTGTTTCCATCAGTGTTTGATCAAGA AGGACAGAGAAGACCAAAATGATCCTGCAATGTCTGAATTTTATGATAAGTTGACCAATGCATATAATGATCCAGCTCTG ATGCCAATCAAATATCCCGGAGGGTTTAGTAGTGGCAGGTCTCCTCTACTTCAGAGGCCAGAAGTTTAA
CDS sequence (LotjaGi1g1v0506200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGACTCAGCTTCGTGATAACTCTGATTTTCAAAAGAAGTCTCTGGATGCCTTCAGCATTTCTAACGTGAACAATGG CTCAAACAGGTTATGGATCCATTTTTGCGCTGCATATGTTTTCACGGGAGGTGTTTGCATTCTTCTTTATCATGAGTATG CATATATTTCATCAAAAAGAATTGCTTGCTTTTATTCATCCAAGCCGGAGCCTCATCAATTTACTATATTAGTACGGGGT ATTCCTGTTCCGCTGGGAAGCACTTGTAATGATGCGGTTGAGCGCTTCTTTCTGGAGTATCACCCTTCTACTTATCTTTC GCATTCGGTTGTCCGTCGAAGCAGCAAACTTCAAATTCTAACTACTGATGCAGAGAGACTCTACAAAAGGCTTACCAAAC TGAAACATAAAGATAACACAACTTCCAGACATAGGCGTGATGGATGTTTTGGACTTTTTGGACATAAAGTTGATACTCTA GATCATTATGAAAAAACATTGGGAGACATTGCTGATAATGTGAGAATAGAACAGTCTTCAATGTCATTGGGAGGAAAGGA AGTCCCAGCTGCTTTTGTCTCATTTAAGTCACGATTTGGTGCTGCAATAGCTTTAAACATTCAAGAAGGTGTCAATCCTA CAGACTGGATTACTGAGCAAGCTCCAGAGCCTCATGATGTTTATTGGCCTTTCTTTTCTGTCACGTTCATCAAAAGATGG ATCAGCAAGCTGGTGGCTTTTGTTGCTTGCAATGCTCTTACAATTCTATTTTTGATCCCAGTTGCATTAGTACAAGGTCT TACCCATCTTGATCAGTTGGAAACCATGTTCCCATCTCTAAGAGGCATACTAAGACTGGCAGTTGTGAGCCAAGTTATAA CAGGATACCTTCCGATTCAGATTCTTCAAGTGTTTCTATCCTTTGTGCCACCTATTATGATTATGCTTTCATCCTTGCAA GGACACATCTCATGGAGTCAGATACAAAAAAGTGCGTGCAGTAAAGTATTATGGTTTACCATTTGGAACATTTTCTTTGC AAATGTACTATCAGGGTCAGCTCTCTATCGATTGAATTACTTTCTTGAACCCAAAGAGTTCCCCAGAGTACTAGCTGAAG CCGTGCCGGTACAGGCGTCATTCTTCATTGCATATGTTGTGACATTCGGATGGACTAACATAGCATCTGAACTCTTTCAA TTGATTCCACTTGCTTACAATTATATAAATAGAACTTTTATTGGAGATGGTGATGATGATTTTGAGGCACCATCAATTCC TTACCACAGCGAAATTCCCAGGATTCTTTTCTTTGGTCTTCTTGGTGTAACATACGTCATCCTTGCTCCTCTGATATTGC CATTTCTCTTGGTATACTTTTGTTTGGGGTACATCATTTACCGCAACCAGTTATTAAACGTTTATGTGCCCAAGTACCAA ACTGGAGGAGAGTTTTGGCCAACAGTGCACAACTACACAATTTTTTCATTGATACTGATGCATATTATAGTAATTGGGAT ATTTGGACTGAAGAAGCTTCCACTAGCATCTGGCTTGACTCTTCCACTTCCTATTGTCACACTTCTATTCAATGAGTACT GCCAGAAACGGTTCTTTCCTATATTCAGAGCTTATCCTGCGGAATGTTTGATCAAGAAGGACAGAGAAGACCAAAATGAT CCTGCAATGTCTGAATTTTATGATAAGTTGACCAATGCATATAATGATCCAGCTCTGATGCCAATCAAATATCCCGGAGG GTTTAGTAGTGGCAGGTCTCCTCTACTTCAGAGGCCAGAAGTTTAA
Protein sequence (LotjaGi1g1v0506200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTQLRDNSDFQKKSLDAFSISNVNNGSNRLWIHFCAAYVFTGGVCILLYHEYAYISSKRIACFYSSKPEPHQFTILVRG IPVPLGSTCNDAVERFFLEYHPSTYLSHSVVRRSSKLQILTTDAERLYKRLTKLKHKDNTTSRHRRDGCFGLFGHKVDTL DHYEKTLGDIADNVRIEQSSMSLGGKEVPAAFVSFKSRFGAAIALNIQEGVNPTDWITEQAPEPHDVYWPFFSVTFIKRW ISKLVAFVACNALTILFLIPVALVQGLTHLDQLETMFPSLRGILRLAVVSQVITGYLPIQILQVFLSFVPPIMIMLSSLQ GHISWSQIQKSACSKVLWFTIWNIFFANVLSGSALYRLNYFLEPKEFPRVLAEAVPVQASFFIAYVVTFGWTNIASELFQ LIPLAYNYINRTFIGDGDDDFEAPSIPYHSEIPRILFFGLLGVTYVILAPLILPFLLVYFCLGYIIYRNQLLNVYVPKYQ TGGEFWPTVHNYTIFSLILMHIIVIGIFGLKKLPLASGLTLPLPIVTLLFNEYCQKRFFPIFRAYPAECLIKKDREDQND PAMSEFYDKLTNAYNDPALMPIKYPGGFSSGRSPLLQRPEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 600 | 600 | 0.0 | – | |
| PANTHER | 1 | 600 | 600 | 0.0 | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| Pfam | 7 | 52 | 46 | 3.5E-10 | ||
| Phobius | 31 | 50 | 20 | - | – | |
| TMHMM | 31 | 50 | 20 | - | – | |
| Phobius | 51 | 243 | 193 | - | – | |
| Pfam | 73 | 230 | 158 | 3.6E-31 | ||
| Coils | 117 | 137 | 21 | - | – | |
| Pfam | 243 | 508 | 266 | 8.2E-71 | ||
| Phobius | 244 | 263 | 20 | - | – | |
| TMHMM | 245 | 267 | 23 | - | – | |
| Phobius | 264 | 282 | 19 | - | – | |
| TMHMM | 282 | 299 | 18 | - | – | |
| Phobius | 283 | 316 | 34 | - | – | |
| TMHMM | 304 | 326 | 23 | - | – | |
| Phobius | 317 | 335 | 19 | - | – | |
| TMHMM | 336 | 358 | 23 | - | – | |
| Phobius | 336 | 356 | 21 | - | – | |
| Phobius | 357 | 375 | 19 | - | – | |
| TMHMM | 370 | 392 | 23 | - | – | |
| Phobius | 376 | 394 | 19 | - | – | |
| Phobius | 395 | 434 | 40 | - | – | |
| Phobius | 435 | 467 | 33 | - | – | |
| TMHMM | 445 | 467 | 23 | - | – | |
| Phobius | 468 | 491 | 24 | - | – | |
| TMHMM | 488 | 510 | 23 | - | – | |
| Phobius | 492 | 510 | 19 | - | – | |
| Phobius | 511 | 601 | 91 | - | – | |
| TMHMM | 515 | 534 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi1g1v0506200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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