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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0516800 |
| Transcript ID | LotjaGi1g1v0516800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA (Guanine(26)-N(2))-dimethyltransferase; TAIR: AT5G15810.1 tRNA (guanine(26)-N(2))-dimethyltransferase; Swiss-Prot: sp|Q9LFU5|TRM1_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1; TrEMBL-Plants: tr|A0A151RGF2|A0A151RGF2_CAJCA Putative N(2),N(2)-dimethylguanosine tRNA methyltransferase 2; Found in the gene: LotjaGi1g1v0516800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:103951386..103958058) extracted from Lotus japonicus Gifu genome v1.2.
TCCACCAACATATCTCTCATATCAACGGCGGAATCAAACACACAACTTTCTGAGGTGAAGTAATCTGTCATTGCCAACTT AGCCAAAATGTGTTGATAAAAGACCATAAATCTTATAAGAGTAAAAACATATTTAATTAACCCGATATAAAATTGAAAAA TAAACACAGTATAAATTTTCAACCCTTTTTCTGAATAGAGGTTTTGTTTACTGCGTAGAGGAGAGGATCCAAAGTGGGTG TGTGTGCACAGTGCACACAGAGTCTTGTTGCTGGAAGTTGAACACTTACACAGAGTCTTGTTCTTCCTTTTCAATGGCAA TGGATCTCAATGATTACAAAATCATTAAGGAGGGTGAAGCTGAGATTCTCATGCAACCCGAGAATGAAGTGTTCTATAAC AAAGCCCAGGTCTCAAAATCTCATCTTTCTTCCGATTGAATAATTTTGTGGTTAGTGAATGTTACTTAACCTTCCACTGT GTAATGATTTTAGGTTAATAACAGGGATATGTCAATTGCTGTGTTGAGGGCTTTTATTTTGAAACGAAAGCAAGAGCATG AAGCAATGTTGTTGTCTAAGAGAACAAAAGCAGCTAAAAAGGTATCAGAAAGTTGTTTTTCTGAGCATGTTGTGGAAGAT GGACCTCAAACATCTCTGCCTGAAGATGGGGAGTGTGGAGCACAGGAGGAGATATCTCCTGAAGAACCGGGCAGCATGAG AGAAGAACCAATCAAAACCGCTGAAGAATGCGATGCTGAAGGAGAGTCAATCAATGTTTCAGAAGGAAAAGCTCAGGGGG AACTGAAGCCACTGAGAGTTCTTGAGGTTTTACACAATTGTTTAGTTTCCATTTATATTAGTTTTAATGCTATCTGGGCG TTAACATTTAATAGCTGATTAAATAATTTTCGTTGCAATGCAAGTCCAAAAGTTGCATCGTGTTTATAACTGCGTTTTAG TTGCATTTATACACAGGCTTTATCTGCTTCTGGGTTAAGGGCTCTCAGATATGCTCGTGAAGTAGAAGGGATTGGGCAGG TTGTTGCTCTGGACAATGATAAAGGTTCTTCAAGGAATTTTCATTATATGAAAAACAATGTTTTGTATATGGTCTTTCAG TATCATTCAATTGGTCTAGAACATAAATTCTCTATTCTCTACCACCTTTGTATCTGGAGTCTGGACAAACTTCCAGTTAC GGATTTCCAGGCTGTTTAGCATTCTCCATTTATAATAGTCTTCTTTACTTTAAGAGACTAGTTCTTCTTCTTTTCATCAT TTATGTTATGAATTTGCAGACTCACTCCTGATTTTTGCCTCTGGCAGCTTCTGTGGAGGCATGTAGAAGGAACATCAAAT TCAATGGATCAGTCGCATGCTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATATATGTTAACCCACCCGAAAGAA TTTGATGTGGTAAGTGGATGCAATTTTTTCTTATATTACATCACGAAGTCATTGCCACAAGTTGAACCTATGATTATGAT CACCACCTCAAGTGGCTTAGAGTTAGTGCTTTGCTGAATACCATTGTTATGTGTTTGTATTGGCCTTTTAATCTGAGGAA AAGAACTTTTAAATTGTTGAGTCTGAATCCTGGAGTTGGACAATCATATAGGATCCACTTCTTGTAACCCCCTTATTAAT AACTACTTATATTATCTGTTCCTTTATCTTATGGAAAGAAGCTTGTTACATGATTTTTAATTTAACCACGTTTCATAGCC TTCAATTGTTCTTGTTTTTTCAGGTTGATCTTGATCCTTATGGTTCACCTTCCGTGTTTCTGGATTCAGCAGTTCAATCT GTTGTTGATGGCGGTATGCTGATGTGTACTGCAACAGATATGACAGTGCTCTGTGGGGGGTACGCGGAGGTCTGCTATTC AAAGTAATGTTAACTTAATACTCTTATTGGGCATGAGCTTTCACTCAACAATAATATGATTAGTGGACTGATCTTCTTAC AACTTCTGTTCATACTAGATATGGATCATACCCACTGAGAGGAAAGTATTGCCATGAAATGGCTTTAAGAATCCTTCTGG CTTCCATCGAGGTATACATATAATGATTATGTCTCTTTACATTGAAACTAAGATTTATTCAATTTGCTGCAATTATAAGG ATTTGAGAGGTGAATTAATTGTCCAATCAATATATAGTCATATTGTTAGTGGAATTTGAGCAATATCAGAGAATATATGT TGCTATCATTTCCCTGCACATGGGAAGTAAACAAATCCAGCAAGAGTACTAGTAGCTGTATTTTAAATATTATCAATTTA AAAAAAAATGGATGGACTAAATATCCCTCATACATGAATATTAATATTTATTTAAGGCTCTAGGCCAGTTTCCTGTGAGT GCCAGACAAAAGGTTACTTCTGAGGATTATTGTTGCTATTTCTAAAAAATAAATGTTCTCTGGACAAAAAAATCACTAGA TATAGAATTACCTTGATGACACTTCACGGAGCAGTGATAAATTATTACATTAACTGTGTTTCAGTATCTTTTCTTATTGA GAGGATTTGATGCATTTTATAAAGTAAAGTGCGGAATTATAAAATCATAAAATTTAAATTAGAAAAGAAGCTTGATGGTC CCTTACTGCACATCGGTTTATTGATTGTATGATTACTAATTATAGGATATATGTTTATCTTTGCTTGTATCTACCCTTCT TAGATTAGTTTCAGCGGAATGAACAGCTGAATGTTAGGAAAACAGAAAAAAAAAGTGACATGGTGATATAAAGTTGGACC CATATTGTGCATCTACTGTAAGCAGTCTTATCTGACATTTGCTATCGGCTGATTCCATGAAACACATTTAATGCAGAGTC ATGCAAATCGTTACAAGCGATATATTGTTCCAGTTCTATCTGTTCAAATGGACTTTTATGTTCGTGTTTTTGTTCGCATA TACACGTAAGTCCTCTTCGTTTTTCTGACATCATTTCAATGAAAATGTTTTGTTGGAGACTTCATGAAATGATGATTACA TAACAATACATAACTTTCTCGGCGGTCAACTGAAACATGAAATAATGGGTTGCAGGTCTGCAAGTGCGATGAAAAACACT CCCCTGAAGCTTTCATATGTTTATCAGTGCACTGGCTGTGATTCTTTCCACCTCCAGCCCATTGGGAGGACCATTTCTAA GGTATATATCCTGGGATTTCGAAAATCATACTTGTTTGTATATATCACAAGAAATAGATGTTGCTTGGAAAGTGAAATTG TTATCTGTGATTCACTATTTTCTGCCATATCTCGGTTCCTGGCATGTATTGTTGTTATATGATATCCTGTAATAATCAAA GCTATTGGTCTTGATGTTACCCTCATTATTGTGTAGCCTTTTGTTTGCTTTGCCTATTTGGTTTTCTAGGTTTCTTTTCT TGCAGTCAAAAACAAAGTTGGGGTGACACAACCTATATAATGCTTGTGTGGGTGTGTTCTTTACATGGTCTAGAAGTTAG AATCTGGCTAACTTTTGTCTTTATGTGTAATGGAAGAATGAAATGGAGTGATCTTTATAGGTTTGACCCATCAGTCTCTC TGATTCATATAGTATAGGTATTGTTGACACTACCAAACTAAAAAAAAAAAAATTCCCTGATAAAAACCTATATAATTCTT TTCTTGCATGTAGTTGAGGTAGATGTGGTGGATGATAAATTCTATTATGATGCCCTGGTTTGAAGTGTTCCTTTTACTAC TAATTTTTTTTTTATTTTTTTTATCTTTTAAGATGTAAATTGAGTCCAATGCTTATGATTCATCTGATGGGTAGTCTTAT TTTTGTATTTTCATTTCTCAGAATAATAGTGCCAGATATCTACCTGGACACGGTCCTATTGTTCCTCAAGAATGCACTCA TTGTGGGAAGAAATTCAACATGGGCGGGCCTATACGGTCCGCTCCAATCCATGATCAAGAATGGGTGACATCTATGCTTG CAGATGTGAAATCTATGAAGGACAGGTATCCTGCTTATGATCGCATAAGTGCTGTGTTGACTACAATATCAGAGGTGTGT TTATCTACTGTGTTTTTAATACCATGCATATCACATGGTGTGGTATGCTTCAGATGTGTGGCTGGTGTTTGTTTAGGCTG TGCAACTTACTGTGTGTTCACGTTGAGTAAACAGAGGAGACCAAGTTAAAACCCTATTAGAATTAGGGTTCTAAACCTAG CCACCGTTTCAGTATATCAAGTAAACATCCTTTTTATAAGAGGTCATTTTCCCTTTTATAGTGGTAAGCGAATAACCCTA ACCATAGATCTCTCTAAGACTGGGGCCTTCAACATGAGCGGGCCTACATGGTCTGCTCGGATCCATGACCAAGAATGGGT GACATCTATGCTTGCAGATGTGAAATCTATGAAGGACAGGTAAAGTCTTACTTGCTAAGTGAATAAATCAAGCTGCACGG CGTGAAATTCGCTCGCCACATAGGGAGTGTGACTCGTCAGGAATCTCTCAAGCTTCAAGGGGTCACCTTGAGTCTGTACA CTGGGTTCATCACTTGCCAATGTCGTTCAAAGAAGAATCGCCCTATCACATGAATCGCCTCAATCCAGGCGTAACTTGGT CGAGTCCTCAACTTGGAAGCCCCTGACCAGTCCACAAGACACCATGCCTGAAGTATGAAGGCTATGTGTGTCTTCATTAA TAGCTCTCCATGTCTTTGTTATGGCCTCTGGATCTATAAATTCTGCATGAGTGAAGAGGCGACCCTTTCAGTAGGCGACC TCCATGTTACTTGTGAGCGAATCCTCAACTGAGAGGTCCCTGACAAGTCCACTGTGCTTCCATTACTAGTTAAAGATCCT GCTGTATAGAAATATTTTGCCTATGTAGTTATTCTAATATTATCATATAATTGTGTTCTTTTTCAGGAACTGCTACATGT TCCCCTGTTTTTGAGTCTGCACAATCTCGGTGCAACACTTAAATGCACTTCTCCATCTGCAGTTGTTTTTCGTTCTGCTG TGATCAATGCAGGCTATCTTATATCTGGAACTCATGCTAGTCCATTGGGACTGAAATCAGATGCACCCATGGATGTTATT TGGGATATAATGCGCTGCTGGGTAAGGAAGTTACACATGATTGACTGGTTGTTGCTGATTTTCTGTTCATGGTGTAATTA AGACCTTGTTTCTTTTTCATTTGTCTTTGACCTCTTGGTTCTTTCAGAGTATGATTTTCTTTCATGTGTTCGTGCATGTG TGCACTTGAATATAAAATGCTATGTCTTTTTTCAGAACAGTATGACTGTATCTTAATCTTGAAGTGGTTCATTTTCTTGT GTTTGGGCATTTTGGGTAAAGAATTTAGGAATGTCTTGCCTTTGCATTTCTCAGTTACTGATTCTATTCCATTATAGGTA AAAACTCATCCTGTGAAAGCTCAACCAGCAGATCTACCAGGAAGTGTCATACTTTCAAAGGAACCTGTTCTCCAGGTATA TTTTGGCTCTAAGTTTTGTTTTCTCACATAAAATACATGACCTTTTATATGATCATTTAACATTATGGAATTCATATCCA TTTTTGTTAGTATTTGTCAATGAAAGAGAAAGCACAATTAAAATGTGTTAAATGACAAAAATGTGTGAAATCTGGAAATT TAATGTGATGGGGGCCACACATGAGATAGCCAAAATTTGAGGCGGCTGATCTAGTTGATAGCCTTCTCCTAAGGGCGACC TCTCCCATAACCTTCGGCTTTAGAAAGTTACATAAAGCTCTACTGATGATGGGTAGCATGGAAATCCTCAAATCCCTAAC AATAATGTTACTCAAAGTTTACATAACCCTTAAACCTTTAAATCTTTGGTTTGTATGTATTTCTCAAATTGCACAAATAT GCACCTTCTAGAGGGGGTGTTTTCCCACTTCATCTTAACACCCACCCCATGATCTGGTATAGTAATGGTGGCTTGAAATT CTCTTGCATGTGTCCCCTGTAGGCTAATTTTGCTCGTGCTGTGGCGTCTCTCAGTAAGGCTCAAGTTAAGAAGGTTGCTC GCTTTCTTCCAAATCCTGAAAGTCACTGGGGTCCTAAACTTAGGGCAGGACGTCAGATCACTAGCAAGCATGTATCTATT TTGGGTCAAGCAGCAGTTGATGTAGCTCTCAACCAGGAAAACAACGAAGAATCTAAAAGCAAGATACAGAAGACAGAAGA TAATATCACAGCTTAGCTCACAATTGACTCAGGTTTTGTTTATGAAACTATTTTATCAATCTTGGGGTCCTACAGTTCTA TATCAAGGTTAACAAAGAAAGCTAACTGTTGTCACTTTTATTTTATTTATTTGGTCCAATCCTATTTGTTGTCACTACAT TTTTGTAAATAGTAGAGTGAGTGATTCCTTAATGCACTTTCACCAAATTAAATTAGGTATTGCACCTTGGTTTTGCTTCG TTCTGGAAATTGCATTAGAGTGAGTGATTCCTTGATGACACTATTATTGCACTTTCCCCAAATTAAATTAGGTATTGAAT CTTGGTTTTGTTTACTTCTGGAAATTGTATGGCTAGAAATATTTTTATTTCATTGATTTCGGATTTCGTATTTCATGCAG TTTAAGTTTGAATACTTAGTTCAAAAAATAAAA
CDS sequence (LotjaGi1g1v0516800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGGATCTCAATGATTACAAAATCATTAAGGAGGGTGAAGCTGAGATTCTCATGCAACCCGAGAATGAAGTGTT CTATAACAAAGCCCAGGTTAATAACAGGGATATGTCAATTGCTGTGTTGAGGGCTTTTATTTTGAAACGAAAGCAAGAGC ATGAAGCAATGTTGTTGTCTAAGAGAACAAAAGCAGCTAAAAAGGTATCAGAAAGTTGTTTTTCTGAGCATGTTGTGGAA GATGGACCTCAAACATCTCTGCCTGAAGATGGGGAGTGTGGAGCACAGGAGGAGATATCTCCTGAAGAACCGGGCAGCAT GAGAGAAGAACCAATCAAAACCGCTGAAGAATGCGATGCTGAAGGAGAGTCAATCAATGTTTCAGAAGGAAAAGCTCAGG GGGAACTGAAGCCACTGAGAGTTCTTGAGGCTTTATCTGCTTCTGGGTTAAGGGCTCTCAGATATGCTCGTGAAGTAGAA GGGATTGGGCAGGTTGTTGCTCTGGACAATGATAAAGCTTCTGTGGAGGCATGTAGAAGGAACATCAAATTCAATGGATC AGTCGCATGCTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATATATGTTAACCCACCCGAAAGAATTTGATGTGG TTGATCTTGATCCTTATGGTTCACCTTCCGTGTTTCTGGATTCAGCAGTTCAATCTGTTGTTGATGGCGGTATGCTGATG TGTACTGCAACAGATATGACAGTGCTCTGTGGGGGGTACGCGGAGGTCTGCTATTCAAAATATGGATCATACCCACTGAG AGGAAAGTATTGCCATGAAATGGCTTTAAGAATCCTTCTGGCTTCCATCGAGAGTCATGCAAATCGTTACAAGCGATATA TTGTTCCAGTTCTATCTGTTCAAATGGACTTTTATGTTCGTGTTTTTGTTCGCATATACACGTCTGCAAGTGCGATGAAA AACACTCCCCTGAAGCTTTCATATGTTTATCAGTGCACTGGCTGTGATTCTTTCCACCTCCAGCCCATTGGGAGGACCAT TTCTAAGAATAATAGTGCCAGATATCTACCTGGACACGGTCCTATTGTTCCTCAAGAATGCACTCATTGTGGGAAGAAAT TCAACATGGGCGGGCCTATACGGTCCGCTCCAATCCATGATCAAGAATGGGTGACATCTATGCTTGCAGATGTGAAATCT ATGAAGGACAGGTATCCTGCTTATGATCGCATAAGTGCTGTGTTGACTACAATATCAGAGGAACTGCTACATGTTCCCCT GTTTTTGAGTCTGCACAATCTCGGTGCAACACTTAAATGCACTTCTCCATCTGCAGTTGTTTTTCGTTCTGCTGTGATCA ATGCAGGCTATCTTATATCTGGAACTCATGCTAGTCCATTGGGACTGAAATCAGATGCACCCATGGATGTTATTTGGGAT ATAATGCGCTGCTGGGTAAAAACTCATCCTGTGAAAGCTCAACCAGCAGATCTACCAGGAAGTGTCATACTTTCAAAGGA ACCTGTTCTCCAGGCTAATTTTGCTCGTGCTGTGGCGTCTCTCAGTAAGGCTCAAGTTAAGAAGGTTGCTCGCTTTCTTC CAAATCCTGAAAGTCACTGGGGTCCTAAACTTAGGGCAGGACGTCAGATCACTAGCAAGCATGTATCTATTTTGGGTCAA GCAGCAGTTGATGTAGCTCTCAACCAGGAAAACAACGAAGAATCTAAAAGCAAGATACAGAAGACAGAAGATAATATCAC AGCTTAG
Protein sequence (LotjaGi1g1v0516800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMDLNDYKIIKEGEAEILMQPENEVFYNKAQVNNRDMSIAVLRAFILKRKQEHEAMLLSKRTKAAKKVSESCFSEHVVE DGPQTSLPEDGECGAQEEISPEEPGSMREEPIKTAEECDAEGESINVSEGKAQGELKPLRVLEALSASGLRALRYAREVE GIGQVVALDNDKASVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPYGSPSVFLDSAVQSVVDGGMLM CTATDMTVLCGGYAEVCYSKYGSYPLRGKYCHEMALRILLASIESHANRYKRYIVPVLSVQMDFYVRVFVRIYTSASAMK NTPLKLSYVYQCTGCDSFHLQPIGRTISKNNSARYLPGHGPIVPQECTHCGKKFNMGGPIRSAPIHDQEWVTSMLADVKS MKDRYPAYDRISAVLTTISEELLHVPLFLSLHNLGATLKCTSPSAVVFRSAVINAGYLISGTHASPLGLKSDAPMDVIWD IMRCWVKTHPVKAQPADLPGSVILSKEPVLQANFARAVASLSKAQVKKVARFLPNPESHWGPKLRAGRQITSKHVSILGQ AAVDVALNQENNEESKSKIQKTEDNITA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 573 | 571 | 0.0 | – | |
| PANTHER | 3 | 573 | 571 | 0.0 | ||
| SUPERFAMILY | 8 | 484 | 477 | 7.21E-108 | ||
| ProSiteProfiles | 9 | 482 | 474 | 135.851 | ||
| TIGRFAM | 11 | 484 | 474 | 8.3E-93 | ||
| Pfam | 12 | 483 | 472 | 2.2E-116 | ||
| MobiDBLite | 77 | 110 | 34 | - | – | |
| CDD | 140 | 242 | 103 | 4.98792E-5 | – | |
| Gene3D | 426 | 484 | 59 | 1.6E-15 | ||
| Coils | 565 | 585 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | TRNA (guanine-N2-)-methyltransferase activity | Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing guanine = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine. | ||
| Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. |
Expression pattern of LotjaGi1g1v0516800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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