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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0517100 |
Transcript ID | LotjaGi1g1v0517100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | B12D-like protein; TAIR: AT3G29970.1 B12D protein; Swiss-Prot: sp|P58991|PPK1_CHLTE Polyphosphate kinase 1; TrEMBL-Plants: tr|I3SVQ5|I3SVQ5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0517100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104011610..104012250) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGCGTTGGATGAAACCAGAGGTACCATGTTTTTTTTATAGATTAACTATTAGTCATATGTTTATGTGTGGTTTTCA CTTTTGAAAATGTATAAATGAATATTGGAGCAGTTAATTCTGTTTTATGAGGCTTTAATTTATTGTTACCTTTGCCACAT AGGTTTACCCTCTATTGGCTGCAATGACCTTTGTGACCGGCATGTGTGTCTTTCAGCTAACAAGGAACTTGCTCGGGAAC CCTGATGTTAGGTAATTATTGACTCTCATGAAACACAAGACTAGACTCAAATTCATAAATCGAACCTACATGCATATACA TATACAATTTCTGATAGACACCCTTCAAACATATTATTTTGTGTCGGTTAAATTTTCCGATAAAGTAATGTGTTTATAGG GTGTCGTCATATTATTTATGTCTATTAATCAATTTTGATATAAATATGAATTGTTCTAATTTGTTGATTTGGGTTGAAAA TTTCATTTAGGATTAGCAAAGCTCGTCGAAGCATGGGAGTACTCTTTGATAACAAAGAAGAGGGGGAGAGATATGCTGAG CATGGCTTAAGAAAGTTCCTTCGTACTCGGCAACCGGAGATTATGCCCACCATCAACCACTTCTTTAGTGAAGAAAACTA A
CDS sequence (LotjaGi1g1v0517100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCGTTGGATGAAACCAGAGGTTTACCCTCTATTGGCTGCAATGACCTTTGTGACCGGCATGTGTGTCTTTCAGCT AACAAGGAACTTGCTCGGGAACCCTGATGTTAGGATTAGCAAAGCTCGTCGAAGCATGGGAGTACTCTTTGATAACAAAG AAGAGGGGGAGAGATATGCTGAGCATGGCTTAAGAAAGTTCCTTCGTACTCGGCAACCGGAGATTATGCCCACCATCAAC CACTTCTTTAGTGAAGAAAACTAA
Protein sequence (LotjaGi1g1v0517100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRWMKPEVYPLLAAMTFVTGMCVFQLTRNLLGNPDVRISKARRSMGVLFDNKEEGERYAEHGLRKFLRTRQPEIMPTIN HFFSEEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 86 | 86 | 2.3E-47 | – | |
PANTHER | 1 | 86 | 86 | 2.3E-47 | – | |
Phobius | 1 | 11 | 11 | - | – | |
Pfam | 6 | 74 | 69 | 4.1E-21 | ||
TMHMM | 10 | 32 | 23 | - | – | |
Phobius | 12 | 32 | 21 | - | – | |
Phobius | 33 | 87 | 55 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0517100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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