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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0518100 |
| Transcript ID | LotjaGi1g1v0518100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A0B2SLE8|A0A0B2SLE8_GLYSO F-box/kelch-repeat protein; Found in the gene: LotjaGi1g1v0518100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104158609..104160159) extracted from Lotus japonicus Gifu genome v1.2.
CTCTAGAACACCCTCTCACTCCCTCTCTCTTTGCTCTACTGAAGCTTTGTATCAGCATGGAGAAGAAGGAAACATAGAAG GAGAAGAAGAAACCCAACCTCATCGAGTTGATTCCTGAAATGACCGGTCTTTCTTCTGATCATAAGAACAAGAAGATGAG GATCAACGACAAAGAGAACCAGAACATCGTCGCTCTCCCTGAGGATTTGATTCCACTTATTCTGGTGAGGTTACCTGTTC GATCTCTCCTCCGCTTCAAATCGGTGTGTAAGTTGTGGCTGTCTCTGATTTCAAACACCCAATTCGCAAAATCACATTTT GATCTAGCTGCTGCACCCACTCACCGTCTTCTTCTCAAAAGAATCAATGGTGGTTCTGAAATTCAATCATTGGATTTTGA AGCATCGCTTCGCGACGATTCTGCTGTGGTAAACCTCAAATTCCCACCCTACAATGCTCCATTTTTTCTAACTTTAGGTT CTTGCAGAGGTTTTATTCTGTTGACAAAAACGATGGGTCGGTCAGAAGGTGATCTCATTTTGTGGAACCCTTCAAATGGT TTCCACAGAGAAATTCAAGCAACCTATGGCTATGATGACTGGGACTCATGGTATCACCCATCATCAACCCGTGTCCGCCA AGGAATTCCTCGTTATGTCGGTTGTTTTGTGTCTGGTTTTCTGTATGGTTTTGGATATGATCAGTCCAACGATGACTATT TTCTTGTTTTGATACGATTTGGTAGACATGAACCTCAAGCAATTGAGCATGGAGATGACGACCTTATTGTTTGTATGACA TATGGTGGACCTAAAGTGACTACATTTTCGCGGCCTCGGATTGAGGTTTTGTCTCTTAAAACCAATGTCCCCTCCTTCAT TTATGGCGAAGAGCTTGAATATGTGGAGCTCGGACGTCAGTCAGCATCTGGTTTGTTCTTGAATCAGTCCCTGCATTGGT TGGTCAAATCCAAGGCTATAGGGCTTCATGTAATCATTGCCTTTGATTTGGTTGAGAGGAGTTTATCGGAGATTCCTCTG ACACCTGATTTGGCACAAGAATTGACAACACTTGAAAATTATCATTTGACGGTACTGGGAGGATGTCTTGGTTTGTGTTG TAATGATGTTGGTGATGACCATGAAATGACTGAGATATGGGTCATGAAAGAGTATAGAGTGCAGTCTTCTTGGACTAGAT CTTTTGTTCTGCCTGAGTATGACTTTATACCAATATGCTTCACTGTAGGTGGTGGTGTTTTTGGATCAGATAGTAGTAAA AGATTTGAGAAATTTGATGATAACGGAGAACTACTGGAGGATCACACATATGGACAAGAGAACGAAGTTGTTTCTAAATG TTTTGGCATGTACAGGGAGACCCTACTAACACTCCCTAGTGAACTATCATGACCTTGAGGAAGCACATGAAGACAACTGT CAGTACCTAGAAACAAGGAAAAATTAGTAAGCAATGTTCTCCAACCCTTTTTATTTCATTGTTCTAGTTCATCTTGTATT ATGAAAAACTCAAAGCTATATGCATAATACC
CDS sequence (LotjaGi1g1v0518100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCGGTCTTTCTTCTGATCATAAGAACAAGAAGATGAGGATCAACGACAAAGAGAACCAGAACATCGTCGCTCTCCC TGAGGATTTGATTCCACTTATTCTGGTGAGGTTACCTGTTCGATCTCTCCTCCGCTTCAAATCGGTGTGTAAGTTGTGGC TGTCTCTGATTTCAAACACCCAATTCGCAAAATCACATTTTGATCTAGCTGCTGCACCCACTCACCGTCTTCTTCTCAAA AGAATCAATGGTGGTTCTGAAATTCAATCATTGGATTTTGAAGCATCGCTTCGCGACGATTCTGCTGTGGTAAACCTCAA ATTCCCACCCTACAATGCTCCATTTTTTCTAACTTTAGGTTCTTGCAGAGGTTTTATTCTGTTGACAAAAACGATGGGTC GGTCAGAAGGTGATCTCATTTTGTGGAACCCTTCAAATGGTTTCCACAGAGAAATTCAAGCAACCTATGGCTATGATGAC TGGGACTCATGGTATCACCCATCATCAACCCGTGTCCGCCAAGGAATTCCTCGTTATGTCGGTTGTTTTGTGTCTGGTTT TCTGTATGGTTTTGGATATGATCAGTCCAACGATGACTATTTTCTTGTTTTGATACGATTTGGTAGACATGAACCTCAAG CAATTGAGCATGGAGATGACGACCTTATTGTTTGTATGACATATGGTGGACCTAAAGTGACTACATTTTCGCGGCCTCGG ATTGAGGTTTTGTCTCTTAAAACCAATGTCCCCTCCTTCATTTATGGCGAAGAGCTTGAATATGTGGAGCTCGGACGTCA GTCAGCATCTGGTTTGTTCTTGAATCAGTCCCTGCATTGGTTGGTCAAATCCAAGGCTATAGGGCTTCATGTAATCATTG CCTTTGATTTGGTTGAGAGGAGTTTATCGGAGATTCCTCTGACACCTGATTTGGCACAAGAATTGACAACACTTGAAAAT TATCATTTGACGGTACTGGGAGGATGTCTTGGTTTGTGTTGTAATGATGTTGGTGATGACCATGAAATGACTGAGATATG GGTCATGAAAGAGTATAGAGTGCAGTCTTCTTGGACTAGATCTTTTGTTCTGCCTGAGTATGACTTTATACCAATATGCT TCACTGTAGGTGGTGGTGTTTTTGGATCAGATAGTAGTAAAAGATTTGAGAAATTTGATGATAACGGAGAACTACTGGAG GATCACACATATGGACAAGAGAACGAAGTTGTTTCTAAATGTTTTGGCATGTACAGGGAGACCCTACTAACACTCCCTAG TGAACTATCATGA
Protein sequence (LotjaGi1g1v0518100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGLSSDHKNKKMRINDKENQNIVALPEDLIPLILVRLPVRSLLRFKSVCKLWLSLISNTQFAKSHFDLAAAPTHRLLLK RINGGSEIQSLDFEASLRDDSAVVNLKFPPYNAPFFLTLGSCRGFILLTKTMGRSEGDLILWNPSNGFHREIQATYGYDD WDSWYHPSSTRVRQGIPRYVGCFVSGFLYGFGYDQSNDDYFLVLIRFGRHEPQAIEHGDDDLIVCMTYGGPKVTTFSRPR IEVLSLKTNVPSFIYGEELEYVELGRQSASGLFLNQSLHWLVKSKAIGLHVIIAFDLVERSLSEIPLTPDLAQELTTLEN YHLTVLGGCLGLCCNDVGDDHEMTEIWVMKEYRVQSSWTRSFVLPEYDFIPICFTVGGGVFGSDSSKRFEKFDDNGELLE DHTYGQENEVVSKCFGMYRETLLTLPSELS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 166 | 158 | 2.8E-7 | – | |
| PANTHER | 18 | 422 | 405 | 3.4E-79 | – | |
| PANTHER | 18 | 422 | 405 | 3.4E-79 | – | |
| ProSiteProfiles | 20 | 66 | 47 | 10.663 | ||
| SUPERFAMILY | 23 | 88 | 66 | 7.85E-13 | ||
| SMART | 26 | 66 | 41 | 1.2E-5 | ||
| Pfam | 26 | 59 | 34 | 8.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0518100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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