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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0518200 |
| Transcript ID | LotjaGi1g1v0518200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A0B2SLE8|A0A0B2SLE8_GLYSO F-box/kelch-repeat protein; Found in the gene: LotjaGi1g1v0518200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104179892..104182382) extracted from Lotus japonicus Gifu genome v1.2.
TCTAGAACACCCTCTCACTCCCTCTCTCTTTGCTCTACTGAAGCTTTGTATCAGCATGGAGAAGAAGGAAACAGAGAAGG AGAAGAAGAAACCCAACCTCAACCTCATCGAGTTGATTCCTGAAATAACCGATCTTTCTTCTGATCATAAGAACAAGAAG ATGAGGATCAACGACAAAGAGAACCAGAACATCGTCGCTCTCCCTGAGGATTTGATTCCACTTATTCTGGTGAGGTTACC TGTTCGATCTCTCCTCCGCTTCAAATCGGTGTGTAAGTTGTGGCTGTCTCTGATTTCAAACACCCAATTCGCAAAATCAC ATTTTGATCTAGCTGCTGCACCCACTCACCGTCTTCTTCTCAAAAGAATCAATGGTGGTTCTGAAATTCAATCATTGGAT TTTGAAGCATCGCTTCGCGACGATTCTGCTGTGGTAAACCTCAAATTCCCACCCTACAATGCTCCATTTTTTCTAACTTT AGGTTCTTGCAGAGGTTTTATTCTGTTGACAAAAACGATGGGTCGGTCAGAAGGTGATCTCATTTTGTGGAACCCTTCAA ATGGTTTCCACAGAGAAATTCAAGCAACCTATGGCTATGATGACTGGGACTCATGGTATCACCCATCATCAACCCGTGTC CGCCAAGGAATTCCTCGTTATGTCGGTTGTTTTGTGTCTGGTTTTCTGTATGGTTTTGGATATGATCAGTCCAACGATGA CTATTTTCTTGTTTTGATACGATTTGGTAGACATGAACCTCAAGCAATTGAGCATGGAGATGACGACCTTATTGTTTGTA TGACATATGGTGGACCTAAAGTGACTACATTTTCGCGGCCTCGGATTGAGGTTTTGTCTCTTAAAACCAATGTCCCCTCC TTCATTTATGGCGAAGAGCTTGAATATGTGGAGCTCGGACGTCAGTCAGCATCTGGTTTGTTCTTGAATCAGTCCCTGCA TTGGTTGGTCAAATCCAAGGCTATAGGGCTTCATGTAATCATTGCCTTTGATTTGGTTGAGAGGAGTTTATCGGAGATTC CTCTGACACCTGATTTGGCACAAGAATTGACAACACTTGAAAATTATCATTTGACGGTACTGGGAGGATGTCTTGGTTTG TGTTGTAATGATGTTGGTGATGACCATGAAATGACTGAGATATGGGTCATGAAAGAGTATAGAGTGCAGTCTTCTTGGAC TAGATCTTTTGTTCTGCCTGAGTATGACTTTATACCAATATGCTTCACTGTAGGTGGTGGTGTTTTTGGATCAGATAGTA GTAAAAGATTTGAGAAATTTGATGATAACGGAGAACTACTGGAGGATCACACATATGTACAAGAGAACGAAGTTGTTTCT AAGTATTTTGGCATGTACAGGGAGACCCTACTAACACTCCCTAGTGAACTATCATGACCTTGAGGAAGCACATGAAGACA ACTGTCAGTACCTAGAAACAAGGAAAAATTAGTAAGCAATGTTCTCCAACCCTTTTTATTTCATTGTTCTAGTTCATCTT GTATTATGAAAAACTAAAAGCTATATGCATAATACCTAATACATGAAAATGATACCTTAAACCTATTGTTGTGCTCTCCC TTTCTAACTTAAGAATATTTCCTTTTTGTTAAAAACTGATAATTGGAATTGCAAGGAAAGATGAGATTTGGTGTTGGATT GAATTCACTGAAAAATTGTTTGATGCCTTGACTACTCAGAAACATTAAAGGCTATTTGCCAAATGAACTCATGTTTCTCA CAAGCCACAAAGTAGCTATAATATTGTATATATTATCCTTGATGCCATACTCCTGGTTTTTCTTCAAATGACGATATTGT GTTAGAGAATGTCATATGTATCATCTGATATTAAACAATCTAGTGTGAATGCAGCACTAGTGTATGTTTAAGTAAGGATT TGGATTCCAGTAAAATTGGAGTTTGAAGCATACTTTCATATTTAATTATGCTTCGAAGTAGGATTTATCAAACTTTATTT GTAGTAAGTGCCGGTTAGTTAGCATCGTTTTCTCTAGGTAATGTTATTGTGCTTACACTCTATTTCTCTTACCCTCTTTT ACATGGTTTTCATGTTACTTACTTAGGGTGTCTTTTTTGCAAGCTATTGTGCTCTTGCATCCATTGGCGTTGAAGTTGTG TAGATATTGTTGATCTTAACCATATGAGAGCTAAAAGATCGTGATGCAGCAATGGGGTGAAATTGTTGAAACTAATCAAG TTGTGATCTTCATTGATCTCACATGTAATTGATTTAACCGCTTCATCACTTTGATTTCGAATTGATTAGGTTTTCTATGA TAGCTCCTGACATACTTTGCAGTTTTTGTCAGTAGCTCGTATTTTTTGTAATTCAATTTCTAAAGTAGGGAAAACTTTCA TTGTGCTAAACCCCTTTGGATAAGTGGTGTAGAATCCTTGCTGTATTTGATAAATGTTTGATTTCTAAAGAGATTTTGGA GCAAAATGGCC
CDS sequence (LotjaGi1g1v0518200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAGAAGGAAACAGAGAAGGAGAAGAAGAAACCCAACCTCAACCTCATCGAGTTGATTCCTGAAATAACCGATCT TTCTTCTGATCATAAGAACAAGAAGATGAGGATCAACGACAAAGAGAACCAGAACATCGTCGCTCTCCCTGAGGATTTGA TTCCACTTATTCTGGTGAGGTTACCTGTTCGATCTCTCCTCCGCTTCAAATCGGTGTGTAAGTTGTGGCTGTCTCTGATT TCAAACACCCAATTCGCAAAATCACATTTTGATCTAGCTGCTGCACCCACTCACCGTCTTCTTCTCAAAAGAATCAATGG TGGTTCTGAAATTCAATCATTGGATTTTGAAGCATCGCTTCGCGACGATTCTGCTGTGGTAAACCTCAAATTCCCACCCT ACAATGCTCCATTTTTTCTAACTTTAGGTTCTTGCAGAGGTTTTATTCTGTTGACAAAAACGATGGGTCGGTCAGAAGGT GATCTCATTTTGTGGAACCCTTCAAATGGTTTCCACAGAGAAATTCAAGCAACCTATGGCTATGATGACTGGGACTCATG GTATCACCCATCATCAACCCGTGTCCGCCAAGGAATTCCTCGTTATGTCGGTTGTTTTGTGTCTGGTTTTCTGTATGGTT TTGGATATGATCAGTCCAACGATGACTATTTTCTTGTTTTGATACGATTTGGTAGACATGAACCTCAAGCAATTGAGCAT GGAGATGACGACCTTATTGTTTGTATGACATATGGTGGACCTAAAGTGACTACATTTTCGCGGCCTCGGATTGAGGTTTT GTCTCTTAAAACCAATGTCCCCTCCTTCATTTATGGCGAAGAGCTTGAATATGTGGAGCTCGGACGTCAGTCAGCATCTG GTTTGTTCTTGAATCAGTCCCTGCATTGGTTGGTCAAATCCAAGGCTATAGGGCTTCATGTAATCATTGCCTTTGATTTG GTTGAGAGGAGTTTATCGGAGATTCCTCTGACACCTGATTTGGCACAAGAATTGACAACACTTGAAAATTATCATTTGAC GGTACTGGGAGGATGTCTTGGTTTGTGTTGTAATGATGTTGGTGATGACCATGAAATGACTGAGATATGGGTCATGAAAG AGTATAGAGTGCAGTCTTCTTGGACTAGATCTTTTGTTCTGCCTGAGTATGACTTTATACCAATATGCTTCACTGTAGGT GGTGGTGTTTTTGGATCAGATAGTAGTAAAAGATTTGAGAAATTTGATGATAACGGAGAACTACTGGAGGATCACACATA TGTACAAGAGAACGAAGTTGTTTCTAAGTATTTTGGCATGTACAGGGAGACCCTACTAACACTCCCTAGTGAACTATCAT GA
Protein sequence (LotjaGi1g1v0518200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKKETEKEKKKPNLNLIELIPEITDLSSDHKNKKMRINDKENQNIVALPEDLIPLILVRLPVRSLLRFKSVCKLWLSLI SNTQFAKSHFDLAAAPTHRLLLKRINGGSEIQSLDFEASLRDDSAVVNLKFPPYNAPFFLTLGSCRGFILLTKTMGRSEG DLILWNPSNGFHREIQATYGYDDWDSWYHPSSTRVRQGIPRYVGCFVSGFLYGFGYDQSNDDYFLVLIRFGRHEPQAIEH GDDDLIVCMTYGGPKVTTFSRPRIEVLSLKTNVPSFIYGEELEYVELGRQSASGLFLNQSLHWLVKSKAIGLHVIIAFDL VERSLSEIPLTPDLAQELTTLENYHLTVLGGCLGLCCNDVGDDHEMTEIWVMKEYRVQSSWTRSFVLPEYDFIPICFTVG GGVFGSDSSKRFEKFDDNGELLEDHTYVQENEVVSKYFGMYRETLLTLPSELS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 32 | 189 | 158 | 3.1E-7 | – | |
| PANTHER | 41 | 444 | 404 | 4.9E-79 | – | |
| PANTHER | 41 | 444 | 404 | 4.9E-79 | – | |
| ProSiteProfiles | 43 | 89 | 47 | 10.663 | ||
| SUPERFAMILY | 46 | 109 | 64 | 8.9E-13 | ||
| SMART | 49 | 89 | 41 | 1.2E-5 | ||
| Pfam | 49 | 82 | 34 | 9.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0518200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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