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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0518800 |
| Transcript ID | LotjaGi1g1v0518800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pollen Ole e 1 allergen and extensin; TAIR: AT5G15780.1 Pollen Ole e 1 allergen and extensin family protein; Swiss-Prot: sp|P11657|PAC_STRMG Major cell-surface adhesin PAc; TrEMBL-Plants: tr|V7B1E5|V7B1E5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0518800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104232164..104234386) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTTTCCTATCTGTTTGGTGATGGGAAAAGCAAGCCTACAATTACTTCATTTTAGTTTACAGTTGACTGGTTTTCCCA TGATAGGCATAAATAGCCTTGTTATGGCCAAGGCTATAAAAATTTAATGTTTTGTAATATCTTTATCAAAGAAAGCAAGA GGAACAGAAGAAAAGATAAAAAGAGGGATAAGAGCAAACTTGAGATAGTGTACAAGATATTATTAATAGACCCTCTTTGT TGTTGAAAGCACAACACAATCACCAATTAGCACTTTCTCAGTTTCTGAGAGAACAAGCCTTAGAATGTCTTGGTTCCTTG TAGTACTGTTTCTCAGTCTCACATTTGGTAATCCTACTGAGGCTATCCATGACAAGAAGCCTCCCTCTGCTGTTGTGGTT GGCACTGTCTACTGTGACACGTGTTTTCAACAGGATTTCTCCATGGGCAGCCATTTCATTTCAGGTTCAAATCCTTGCCT TGTGTATCGGTTCAATTTTATGTCTCCATTTAGCTTATTTCATGTTTGAAAATCTTTCTACAATTGATTCTAGAGTCGGA ATCAATTCTGACAAGAAAATTTTACTGAGTAGTTTCAGTTTGAGTGTTAGAATTGTTTCCGAGCTAATGCAAATATGCTA TAAATCAGTTGACAGTTTCAGTTTCTGTGAGTAATTTTTAGTGTCAAAATTGATTCCGAGCTGATCCAAACATGCTATAA AGGGTTCAATTTTATATCTCTAATTAGCATAGTACATCTTTGGAATTTTTTTAACAATTGATTCTATATCCAGAATTAAA TTATGAGGAGAAACTTCTATGATTAGTTTATGGATTTAGAATTAATTCTGATGGAAGAGAATCTGATATTCTGTTGTCCT ATATTCTTGTGTGCAGGTGCATCAGTTGCTGTGGAATGCAAAGATGGAGATGGTAGTTCAAATTCAAGCTTCAAGAAAGA AGTGAAGACAGATGAGCATGGGAAATTCAGAGTGCACCTTCCATTCTCAGTGAGCAAACATGTAAAGAGAATCAAGAGGT GCAGTGTGAAATTGATAAGTAGCAGTGAGCCTTATTGTGCTGTGGCCTCAGCAGCTACTTCTTCTTCACTTCACCTCAAG TCCAGAAAGCAAGGACTACACATATTCTCAGCAGGGTTTTTCTCATTCAAGCCACTTAAACAGCCAACACTTTGTAACCA AAAACCAAGGGTTCAAAAGGGGGCAGATTTTGTGATAAAATCATTTCCTCCAAATATAGACCCTTCATTTCCACCTCCAC TTCAGGATCCAAACACACCTGGTGGTGTTCCTTTTCTTCCTCCCAATACTCTTCCTGGATTGCCTGGGCTTCCACAACTT CCAGGACTCCCTCCTCTGCCACCCCTTCCAGGAATACCAATACCAGGGTCACCCCCAAAGCTGTCAAAACAGGCCAGCCC AGGGCACATGACCAAAACTTCAGACAAAAATGAGCCTTCAGATATAAAAGTTGTTCACCCTGAAACCTTCATCTTCCCTC CTAATCCACTTCAGCCACCTATTGTTCCCAACCCACTTCAGCCACCTATTGTCCCCAACCCACTTCAGCCACCTCCCCTT GTTCCCAACCCACTTCAGCCACCAACACCACCACTCATTCCAAACCCACTTCAACCACCAACACCACCACTCATTCCAAA CCCACTTCAGCCTCCACCATCAGGACCATCACCATTTTTTCCATTCCCACCAGTACCAGGTTTTACTCCACCTTCACCAC CACCAGTTTCTCCCTTTCCTTTCCTTCCATTGTTCCCTCCTCCTGGCTCACCTCCTGCTTCTTCTCCTTAACTAAATATA GCAGCTATCCATATATGGAAATCATAATAATATAATAGGGTATGATATTGGTGACTAAGACTGAAAAAATTTGAAACATG CATGATTAATGTATTAGCAATAAATTCAAAGATATGGTCATCTGAAAGCTTTAATATTATAAATTATTATTATTTGCACA ATCTGGATCCTGGAATTGTTCTTGAAATTGACACTTTTGATTGTGATAAGCAATGCTGGCACATGTTCACTGTTCCAATG AGAAATTCTAGTGATAACAACTAATATTGATGATCTTGTTTAATGCTGTTGCGGTTGTTGCATGTGATCCATTACCACAA GAGTTTGGACTTTTTGAAAACCAACCTCTCGTGAGTGAGGGAAGAGTAATGATATATACACAC
CDS sequence (LotjaGi1g1v0518800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTGGTTCCTTGTAGTACTGTTTCTCAGTCTCACATTTGGTAATCCTACTGAGGCTATCCATGACAAGAAGCCTCC CTCTGCTGTTGTGGTTGGCACTGTCTACTGTGACACGTGTTTTCAACAGGATTTCTCCATGGGCAGCCATTTCATTTCAG GTGCATCAGTTGCTGTGGAATGCAAAGATGGAGATGGTAGTTCAAATTCAAGCTTCAAGAAAGAAGTGAAGACAGATGAG CATGGGAAATTCAGAGTGCACCTTCCATTCTCAGTGAGCAAACATGTAAAGAGAATCAAGAGGTGCAGTGTGAAATTGAT AAGTAGCAGTGAGCCTTATTGTGCTGTGGCCTCAGCAGCTACTTCTTCTTCACTTCACCTCAAGTCCAGAAAGCAAGGAC TACACATATTCTCAGCAGGGTTTTTCTCATTCAAGCCACTTAAACAGCCAACACTTTGTAACCAAAAACCAAGGGTTCAA AAGGGGGCAGATTTTGTGATAAAATCATTTCCTCCAAATATAGACCCTTCATTTCCACCTCCACTTCAGGATCCAAACAC ACCTGGTGGTGTTCCTTTTCTTCCTCCCAATACTCTTCCTGGATTGCCTGGGCTTCCACAACTTCCAGGACTCCCTCCTC TGCCACCCCTTCCAGGAATACCAATACCAGGGTCACCCCCAAAGCTGTCAAAACAGGCCAGCCCAGGGCACATGACCAAA ACTTCAGACAAAAATGAGCCTTCAGATATAAAAGTTGTTCACCCTGAAACCTTCATCTTCCCTCCTAATCCACTTCAGCC ACCTATTGTTCCCAACCCACTTCAGCCACCTATTGTCCCCAACCCACTTCAGCCACCTCCCCTTGTTCCCAACCCACTTC AGCCACCAACACCACCACTCATTCCAAACCCACTTCAACCACCAACACCACCACTCATTCCAAACCCACTTCAGCCTCCA CCATCAGGACCATCACCATTTTTTCCATTCCCACCAGTACCAGGTTTTACTCCACCTTCACCACCACCAGTTTCTCCCTT TCCTTTCCTTCCATTGTTCCCTCCTCCTGGCTCACCTCCTGCTTCTTCTCCTTAA
Protein sequence (LotjaGi1g1v0518800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSWFLVVLFLSLTFGNPTEAIHDKKPPSAVVVGTVYCDTCFQQDFSMGSHFISGASVAVECKDGDGSSNSSFKKEVKTDE HGKFRVHLPFSVSKHVKRIKRCSVKLISSSEPYCAVASAATSSSLHLKSRKQGLHIFSAGFFSFKPLKQPTLCNQKPRVQ KGADFVIKSFPPNIDPSFPPPLQDPNTPGGVPFLPPNTLPGLPGLPQLPGLPPLPPLPGIPIPGSPPKLSKQASPGHMTK TSDKNEPSDIKVVHPETFIFPPNPLQPPIVPNPLQPPIVPNPLQPPPLVPNPLQPPTPPLIPNPLQPPTPPLIPNPLQPP PSGPSPFFPFPPVPGFTPPSPPPVSPFPFLPLFPPPGSPPASSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 277 | 277 | 1.0E-111 | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 1 | 277 | 277 | 1.0E-111 | – | |
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 364 | 344 | - | – | |
| Pfam | 31 | 121 | 91 | 2.1E-21 | – | |
| MobiDBLite | 197 | 225 | 29 | - | – | |
| MobiDBLite | 197 | 249 | 53 | - | – | |
| MobiDBLite | 263 | 364 | 102 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0518800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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