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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0520200 |
| Transcript ID | LotjaGi1g1v0520200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G69010.1 BES1-interacting Myc-like protein 2; Swiss-Prot: sp|Q9CAA4|BIM2_ARATH Transcription factor BIM2; TrEMBL-Plants: tr|I3SL00|I3SL00_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0520200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104411578..104416572) extracted from Lotus japonicus Gifu genome v1.2.
AAGCAACCTTATCAATTGGATAAACTTCCAAAAAAGAAGAATTGGACAGGTTAATTGATTGATACTAATATAATTGTAAC TGTAACAACTAGTAGTAGGGTCAAGGGTGTACACATTACAATAAGCTCACACCTTTTTCCCATTTTCTTTTCTTTTGCAC ACTTTGGATTTTCTCGAGAAATTTTTTCCATCTATGGCTAGGTCTGCCAAAGGCCATCAAGATGAATTGGACGACGACAA CGACGAAGACCTCTTCACTGAAAACACCTCTTCCTCTCTCAACAAAGGTAGGTTTCTCTCACTCTCCCTTTCTGTGTTTG TGTGTGTGGTTTGATGTGTTGCTATACCCATCTGGGTTTATTGCTTGCTTCCTTGATGGGTGTTTCAAAGTTCTTCTCTT TTTCACATTTCAATTGTATTCCCCAATTCACATTCAATATGTATATACAGTTCTCACGTTGTTTGTGACTTGGCAGAGAA GGTGGATGAACCCACTAAGGGGAAGAGGGTGAACCCTCATCGTTCCAAGCATTCAGAGACTGAGCAGCGTCGAAGGATCA AAATTAACGAAAGGCAAGTTTTTTTTTTAAAAAAAAAAGTACTTTTATTTAGTTAATTGGTACAAATTTTAAGGTGAAAT TTTCTGTCAATTTATGTTAATATTTAATGATATGAATAGATAATATTTGGTTGTTTGATAAGAATTGTATTTGTGGTTCA GATTTCAGGTTCTGAAAGATCTCATACCTCAAAATGATCAGAAAAGAGATAAGGCCTCCTTGTTGTTGGAGGTACTATAG TATATTTGTAGACATCTTAAAGATTAGTTATATTCTTGTTAACTAAATTAAGAAATTTGATGTGTGTTTTTTTTTTCTTT CTGTTTGTTTTGTTATATGCAGGTTATTCAGTATGTTCAGTTCCTACAGGAAAAGCTACAAATTTATGAACAGTCTCATG AAGGATGGAATCAGGAGCCGACGAAATTAATTCCATGGGTAAAGTTATTTGGAATGGTGTCATGCGTGCATTTTCTGACT GTTTATGTTTATTTTGGACCTTGGTTTATGAAATTTGGTGCACTTGTGCTAATGCATGACAATGTCAGTCTGCATTTGTA TCAGTATTGGTATTCAACGCTCTGCTATAATACCTTATACAAAACGGTGTGCGAGTATAGTTGTCTGCTTGATTGATGTA ACCTCATATCTAAAATTGGATTTTTACATGGCAGACTAATTTGGCGTACAAAGCTGCATTTGCATAAGATTGGGAAACTT GTGATAGTCTAATTGTATATGTTTCATTTTTGCTAGACTACAAAAGAAACAACACCAATCACATAGCTCTTTATTCTTGC TAAGTTGGGTCACTACTTGGATTCTGGCTTACCAAGGCCAAATGCATAAATATCTCATACAATAATTTAAGTTCCTTCAT GCTTAGGATTTTACCATGTGCTACTTCTTCAAATTCATATATCTGCATGTAGTTTTTTTACTTTTTTGTAATTACAATAT TCATTGATTTCCAGAACCAGTATCCTTGTAGGAGGTTAGGGATAGCAATATAGCATTGTGGCAAATCCAATGATATTTTT ATGTTCTCATCTTTTTTTTATTCAGAGAAATCATCATGGGCCTGCTGAACATACTACAGATCCTTCTCAAGCTATTCAAA ACGGGTCTGTTATTGCGAAAAATAATGACATCTCTTCATTACTGCCCCAAAATGTACAGAACCCAATAGAGTCTGACTTC TCAACGACAACTATTCAGAAGGGCCACACCCCTTGTTCAGCTACTGAAAAAGTTCCCATGACGAAGCAAATGCGATTGGA CGTGTTTGATCCAGTTGTTAACAGTGGTTTGGTGACCCAGCATGTGCTGGAACCTCTGTCTAATGCGGGCATACCTTCCC ATACCGAGCCTCAAGTATGGCTTAGTAAACCAAATAAGGACAAATATATTGTTCCAGATAATACATTGAAGGAACAGGAG GAGCTGACAATTGAAAGTGGATCAGATAGCATTTCCAATGCCTATTCTCAGAGGTCGGTTTCTTAAGTTCATAGTAGTTT TTTCCTCTCTGATTTCATGTTAATTATTTGATTGGTCCTACCCTATTTAGAGAGTGTAAACAGTGTGTGCGTGCGCAAGT ACATAAGTAATGTTCTCATCTTTATTTGGAGATTATCATAATTCTACTTCAGTTATACTCAACTGAACAACCATTCCCGC ACCACCCCACCTAATACCCTTTAGTTAAAAATTAAAATGGAAAGTAGGTAAGACACTTTTTTCTTCATCTCTAGCACTTC AACACCAAACACTGCTCTTCATCACCAATTCTTATCCGTTGGAGCTTTATGTCTCTTATTTCTCTCTTAAATTTGTCTCT ATCCTGCCATTTTTTCTTTCTTTCTTGCTAAGAAGTCCATAACCCATCTCCTCTGTATCTCTGATTCAGAGCTGAATCTT ACGATTCACTGCTTAATCTTACGATTCAAAGTTGTGTACAGGTTGCACTTTAGTCCAGTGGTGCTGCATGACCACTATAG GTTTCAAGTGCTTTTTGTGCTGATTTCTTAAAGCTTTTTACAAAAAAATGCCAGAAATAGCTGGCAGATGACTAAGAGTT CTCCAAAAGACCCAGTCGCATTCTCAGAATAATGAAACCCTACTTTGGTCCTCACTACTATCGATTCAATGTGACATTTC TGGCTCACTAAAGAAACATGTCTCCTTTGTTGTTTTTTTATCGGTTCTGTTCCCATGTGTTTCTGGATGTTTGTCAAACT AGTGTTCTTTTTCTTTTCAATTAACAATAGTGGAAATTTTTCACTAGGGAGAGAAATATTCAATAGGAGTGCGCAGAGAG GTAGTATGATACAAGACATAGAAGGGAATTGCTGATATGATAGTGAGAAGAATGGGATTCTTTCAAGAAAATCTTGACCT ATATATTTATATACCATTTTGGGCTCAAACATTCATCTGAATAAGCTATTTTGTAGGCTAACATCTGTAAGTTAATCCCC CTTATCTGTCCTGCTGTCCATAGCATGGATTGTGTTCTTTAAAGTGTAAACCAATCAGGATTTTATTGTGTTTCTTAGCC ATTATTTTGTTGGTTGAGATTGTACTTGTCATTTGAAAATTTTGCCAAACGCGTTTGAATAACACTGGAAAACAATTTCT GAATGGTATTACTATTAAGTATTAACAGCTGTAGTATCTCTGTGAGGACGTGTACCATATGTTAGAACTCTGTGACTGAA ATAGTGAAATCCCATAGCTAGTTGCTTCTATCTTAAATGGGCTGAAGCTTGCCATTCCACATTCAAATCATATTGTCATT TTTCTCCACTTGAGTTTTGTCAAGTACTCTTTGCAATTTGCGAGAAACATAAATTATTAGATTCTATCCAGGAAATAAAG AAATTGGGCATAAGAAATGTTCAACAAGTATTCCACAATCATCTTGTTGCAGTTGACATAGTTTTCTTTCTCATCTGCAT GTATTATACAAATTACAACACAAGTGTGCGACACCACCTTGTTGGGAAACTAGTTCTTTAGTTCATGATACCTCTAGTAT ATTGCAGTGGATATCATTCATACTATTGTTCACTGGGTTCATTGTATTTGACAGAATATTAGATACTCTCACACAAGCAC TGCAGTGCTCAGGGGTGGATTTGTCTCAGGCCAGTGTCTCAGTGCAAATTGATGTCGGTAGACGATCAAATAGCGGGTTG ACCCCCTCTACATATAGCTCAAAGGTTTGTTTATACTTCTAGGAATTTTCAATATGTACTTGTTGCACTTTTGACATTGA GTTAGTGGATGCAAGTATGCATTATAAATAGGAAAGGAAGAGGAAGAGGAAATTCCTGCCAAAATGCCAATGTAAAGGTT TGTATTTGGACATGGTGCATTTGGAGGATTGAAATCTTCTGCACCCATATCGTGTCTCATTCTCTGTGCCACCAATAAAA AAATTTACGTTTCAATTAAAAACCACCATGTAAGTTTGTAATTACCCGACTCATATCCTTTTTTATTTGACATGACAAGA TTCCATTGGTGGCACATGAAATTGAGATACTATTTAGGGACAAAAGATCTTTATTTGAATTTGGAACTAGGAGACCAACC ATGCCACTCTAATATGAATTCTAAGGATGCAGTCCTGGCATGGTATGATAATCTTTTATTTCCCCTTTCAAAAGTCACAT TTATGATACCAAATATTCTTTGTTCAGGGTCATCAAAACCAGTTTTTGAACAATCAAGGAATGGCATGTTCAGGAGGTGA TTATTGCAGTGAGGATTCTGAACAAAGTCAGAAGAGGCTCAGGCGAGAAGCAAGCTAGCAGTCCCCCTCAAGTTGATTTT GTCCTGATCATTTTTTCTTCTCAGCGTAGGGAAAGTGCTGTTGGGTTGGTCAGGTCATTTTTGCCATGCTGGTTTAATCC AGATAATGAGATAAAATGTGTATATTTCATGATTATGGCCTTGAAACGAAGGACATTCTGAAATAATGTTATATATGTTT GTGCTTCTATTGAATTTCTCATTTTAATGGCTGAAAACCTGCTCGCTGTTTGATATTTTTCATTTTGTTAATAAGTGGTC GAACATAGTCGTTTTTTAAATTTTCTTTAAAAAAATCACTTGACTAGATTTGTACCCACTATGTTTTACTAGTGTCAACA AGTAAAGGGAAAAAAACACTGTTAAGGTAATAAACAATAAATTTATAATCATTGTTCATGTACCATATTTGCTAACAAAA TATTCTTCAACTCTCCTACTTGCTGCATCTTTTTCTTCTGGGGTACCAAGTGCTTGTGAAGCTAGAAATATATTCGAAGG CCAATTTAGTTAAAGCAATTTGATTGAAGTCCCAAGCAAGAGAAAATAGCAGATATATTTTAGGGTTCAATGTAATTCAT TCGTGCAATTTTATGTGGGCCATGTAAAAAATTGA
CDS sequence (LotjaGi1g1v0520200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGGTCTGCCAAAGGCCATCAAGATGAATTGGACGACGACAACGACGAAGACCTCTTCACTGAAAACACCTCTTC CTCTCTCAACAAAGAGAAGGTGGATGAACCCACTAAGGGGAAGAGGGTGAACCCTCATCGTTCCAAGCATTCAGAGACTG AGCAGCGTCGAAGGATCAAAATTAACGAAAGATTTCAGGTTCTGAAAGATCTCATACCTCAAAATGATCAGAAAAGAGAT AAGGCCTCCTTGTTGTTGGAGGTTATTCAGTATGTTCAGTTCCTACAGGAAAAGCTACAAATTTATGAACAGTCTCATGA AGGATGGAATCAGGAGCCGACGAAATTAATTCCATGGAGAAATCATCATGGGCCTGCTGAACATACTACAGATCCTTCTC AAGCTATTCAAAACGGGTCTGTTATTGCGAAAAATAATGACATCTCTTCATTACTGCCCCAAAATGTACAGAACCCAATA GAGTCTGACTTCTCAACGACAACTATTCAGAAGGGCCACACCCCTTGTTCAGCTACTGAAAAAGTTCCCATGACGAAGCA AATGCGATTGGACGTGTTTGATCCAGTTGTTAACAGTGGTTTGGTGACCCAGCATGTGCTGGAACCTCTGTCTAATGCGG GCATACCTTCCCATACCGAGCCTCAAGTATGGCTTAGTAAACCAAATAAGGACAAATATATTGTTCCAGATAATACATTG AAGGAACAGGAGGAGCTGACAATTGAAAGTGGATCAGATAGCATTTCCAATGCCTATTCTCAGAGAATATTAGATACTCT CACACAAGCACTGCAGTGCTCAGGGGTGGATTTGTCTCAGGCCAGTGTCTCAGTGCAAATTGATGTCGGTAGACGATCAA ATAGCGGGTTGACCCCCTCTACATATAGCTCAAAGGGTCATCAAAACCAGTTTTTGAACAATCAAGGAATGGCATGTTCA GGAGGTGATTATTGCAGTGAGGATTCTGAACAAAGTCAGAAGAGGCTCAGGCGAGAAGCAAGCTAG
Protein sequence (LotjaGi1g1v0520200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARSAKGHQDELDDDNDEDLFTENTSSSLNKEKVDEPTKGKRVNPHRSKHSETEQRRRIKINERFQVLKDLIPQNDQKRD KASLLLEVIQYVQFLQEKLQIYEQSHEGWNQEPTKLIPWRNHHGPAEHTTDPSQAIQNGSVIAKNNDISSLLPQNVQNPI ESDFSTTTIQKGHTPCSATEKVPMTKQMRLDVFDPVVNSGLVTQHVLEPLSNAGIPSHTEPQVWLSKPNKDKYIVPDNTL KEQEELTIESGSDSISNAYSQRILDTLTQALQCSGVDLSQASVSVQIDVGRRSNSGLTPSTYSSKGHQNQFLNNQGMACS GGDYCSEDSEQSQKRLRREAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 58 | 58 | - | – | |
| PANTHER | 2 | 339 | 338 | 3.1E-136 | – | |
| PANTHER | 2 | 339 | 338 | 3.1E-136 | – | |
| MobiDBLite | 29 | 58 | 30 | - | – | |
| Gene3D | 44 | 116 | 73 | 1.5E-20 | ||
| ProSiteProfiles | 45 | 95 | 51 | 16.736 | ||
| SUPERFAMILY | 46 | 124 | 79 | 1.05E-18 | ||
| Pfam | 47 | 96 | 50 | 1.7E-13 | ||
| CDD | 47 | 100 | 54 | 9.42114E-16 | ||
| SMART | 51 | 101 | 51 | 4.3E-13 | ||
| Coils | 92 | 112 | 21 | - | – | |
| MobiDBLite | 322 | 341 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0520200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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