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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0523100 |
| Transcript ID | LotjaGi1g1v0523100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome biogenesis protein BRX1 like; TAIR: AT3G15460.1 Ribosomal RNA processing Brix domain protein; Swiss-Prot: sp|Q9LE16|BRX11_ARATH Ribosome biogenesis protein BRX1 homolog 1; TrEMBL-Plants: tr|I3SQI5|I3SQI5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0523100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104774137..104777423) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCAAGAAGAGAAAGCGCAGTGAAGCTGCTCAAGCTGTGGTACCGCCCAAAAAGGATGATGTTGCTCCAGAGAGACC AGCTAGAACCCTTTTGGGATGGAAGGATAAGAATGTTGTCAATCAAGATGATGAGGTTAACGAGAATGGTCATTCACCTG TGTTTAGGAATAAAGAGAAAGTGTTGGTCACTTGCTCTAGGCGCATTATTTACAGGTATAAATCACAAACCTATATATCT TATTGTAGTTACAGGGTTTGGATTTTGGATTGGTTAGTTTTATGTTCAGAAAAGTTATGATGGTGTGTTTGTGTTGTTAA ATTAAGCTCAATGAAACTTTTACTTTGTGTTGTGGGTTTGTTTTTGGATATGGTGTTGATAGGGTGGTGTGTTTCTCATG AGTTTACAGGTATCGGCATCTGATGTTGAATGTGGTCTCACTTCTACCTCATTGCAAGAAGGATAACAAGGTTGAATCCA AGGAAACTAAAGGGGCCACCCTGAACGAGCTTGTTGAGCTCAAAAACTGTTCCTCTTGTCTATTTTTCGAGGTATTCTTT TTATATGTTACTAGGTTTTTCCACTGCCATCTATTTGTTATGTTTGTGCTATTAGCTTTTCTGCCTGTTTATGGTGTAAG AATTCTTTAATCATCTGATTTTGTTTTATATTTTATCTTTGTGTTATTAGCTTTTCTGCACAAATTGATATGTTATTGTT GGTTCCTTTCAAATCCATATGATCTCTTCCTTTTCTGATTGGGTTAAGCATTTTTTTTATATATTTTATGGATTTATGTT TTGTCCATATTAATTTCTAAAGCATGTCATGCCTGTATCCTCTCTTTTTTTCAAAAACATGTAGTTAATTTAATTTGAAC TATCCAATTGAGGGGATATTTTTCACTCAAACTCTTGAGTTTGCAATCCTCTATACATTTGCTCGAGTCTTTTAAGTCTT TTCAACTTATGTCATTCTGATAATTGTCTTCTCCTCCCTTTTTCTATATATGAATTTCAGTGCAGGAAGGCTAAAGATCT TTTTCTCTGGATGTCAAAGTGCCCTAATGGTCCGTCCGTAAAGTTTTTAGTTAGTGCTGGTAATATTCTCATCTGATTAT TATTACAAGGTTACTTTTAATGATTTTGCTTGTTATGATAATGTAATGTTCTGGGCTCTGTATTCTTTGTTCTTCATGCT TGTTTAATTATATGATTGTTTCTTTCTCTCTCCCCCCTTTTCTCCCTGTTGAACTTTTTATTGAGGCCAGTTTACTGATC TCTCTTTACCCCCACTGCTTTCCAGTTCACACAATGGAGGAATTGAAGCTAACTGGAAATCATCTAAAAGCTTCCCGCCC ACTTTTGACGTTTTCAACAAATTTTGAAAAAGATGCACATTGGAAACTGTTGAAGGAGATGTTGTTACAGGTAATTGCTT TTCTCCTTCCATATGAGCAGTGTTTCTTTCTTGTCTAATTAGTTTGATCTGAAAGCAAGATTAGGAAATTTCTATCGACA TGTTGATTACTCTTGTATTTATATGTACCATTTTAGATCTAAGAGTAAAGGCTAGTTCTATAATGCTTTGTGGGTGCCGT ATAAATTTCTATTGTAAATGAGAATTGTTTGAGATTCAAGAGTAAAAGGTTTGTTCCATAATTCTTCTTGACATTGCAGT ATGAGAGAGTTGTTTTTATGATCACTTTATTTGTAATCTTATCCTACAGACCTACAGTTCTCATATATCTGCTTAAAGGT ATAATCTTGATTTATTATCATTGACCAGAAAAATTCTATTAATGTATGCACATCTTGCTTAGTTTAAATTGAGCGTGTTT TGGACCACACCCTTATTATTCCTATCTAGAATTTTCTCTGATTTTGATATTTGTGCCTGAGTACTGTGTTGAGCATGGCC AGTGGGTTGTGTGAGTGTGTATTTGTGTTTCTGCGTGATTAATTAATAAAGCTATACATAATTTTGATTATTGCTGACAT GCACTTTCTTTCATTCAGATATTTGAAACACCAAAGGACCATAGAAAGTCTAAGCCTTTCCATGATCACGTTTTTGTTTT CTCAATAGTTGATGACCATATATGGTTCCGGAATTACCAGGTTCGTGTTTTTAGTTGCACAAGATCTAAATTATTGGCCT ATGCACCTTTTTCAAATTTGCATTATTAGAACCGCCCAACCCTTCCTTGGGCACTTCCCTCTTTAAGAGTTTAAAGACTG CTGCTCTTTTGTTCTGGATAACCATTCCAACCTAATTCTAGAACACAAATTGTACCCGTATTGATTATAATTATGTAATA TGTTGATTGTTTTGGGTAGCTTTAGCTTATTGACAGAAGGGAAGTTGTTCTATATTTTCCAATTTGGAGGGTTAGCCATA GATTCCCTAACAAATATACTTAAGCATATGAAAAATTTAATAAGCTTTAGCACACAGCTTTGAAGACCTAGAGAATGATG GCTGAGAAGTCTCTTATGTTAAGCCTTTTAAACTAACAATGGATCAAAAACTCCATCCCATTTTTAAGATTGCACTATTG CAGGAAAAACCTTATATAGTGTAAAACTCCTAACACTGGCAATGGGTGAGATCAAGTACTTACTGTTATATAGTGAGATA TACATGTCCTGAACACCATGACACTACCTGCTCTAATGCACTGGCGGTTCATACATTTGATTATTTGCATGCTGTTTGAT CATTCTCTGCTTCGTGTTGTTACTAGTGCTTACTGAGAAACATTACATGTTAAACCACACTCTTATTCCCATGCAGATCT CTGTTCCTCATAATGAGTCAGACAAATTACCTCGAGGAGGCCTTGATAAAATGACATTGGTTGAGGTATGAAAGTTTTCT AATTGATTTATATTTTGATTTGTCAACTTCTAAAATTTCTCTAACTTGTGTCTGTAAACTACTTGATTAGGTTGGTCCGC GGTTCTGCTTGAACCCAATTAAAATATTTGGAGGCAGTTTTGGAGGCCCAACTTTATACGAGAATCCATTCTACGTGTCT CCAAATCAGGTACTGACCACAATGTTCTCCATGCACATGTCTAGTGTCTATAGTGTTCTACTGAAAATAACTGTCATCAT TGGCTGTGGTTATCAACTTATGCCGGTTCTTGTAGATTCGAGCTTTGGAGAAGAGGAAGAAGGCTGGAAAGTTTGCAAAG AAGGTCAAAGCAAAGACAAGGCGGAAAATGCACGAGATGGCTAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAA AGATTAA
CDS sequence (LotjaGi1g1v0523100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGAAGAGAAAGCGCAGTGAAGCTGCTCAAGCTGTGGTACCGCCCAAAAAGGATGATGTTGCTCCAGAGAGACC AGCTAGAACCCTTTTGGGATGGAAGGATAAGAATGTTGTCAATCAAGATGATGAGGTTAACGAGAATGGTCATTCACCTG TGTTTAGGAATAAAGAGAAAGTGTTGGTCACTTGCTCTAGGCGCATTATTTACAGGTATCGGCATCTGATGTTGAATGTG GTCTCACTTCTACCTCATTGCAAGAAGGATAACAAGGTTGAATCCAAGGAAACTAAAGGGGCCACCCTGAACGAGCTTGT TGAGCTCAAAAACTGTTCCTCTTGTCTATTTTTCGAGTGCAGGAAGGCTAAAGATCTTTTTCTCTGGATGTCAAAGTGCC CTAATGGTCCGTCCGTAAAGTTTTTAGTTAGTGCTGTTCACACAATGGAGGAATTGAAGCTAACTGGAAATCATCTAAAA GCTTCCCGCCCACTTTTGACGTTTTCAACAAATTTTGAAAAAGATGCACATTGGAAACTGTTGAAGGAGATGTTGTTACA GATATTTGAAACACCAAAGGACCATAGAAAGTCTAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACC ATATATGGTTCCGGAATTACCAGATCTCTGTTCCTCATAATGAGTCAGACAAATTACCTCGAGGAGGCCTTGATAAAATG ACATTGGTTGAGGTTGGTCCGCGGTTCTGCTTGAACCCAATTAAAATATTTGGAGGCAGTTTTGGAGGCCCAACTTTATA CGAGAATCCATTCTACGTGTCTCCAAATCAGATTCGAGCTTTGGAGAAGAGGAAGAAGGCTGGAAAGTTTGCAAAGAAGG TCAAAGCAAAGACAAGGCGGAAAATGCACGAGATGGCTAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGAT TAA
Protein sequence (LotjaGi1g1v0523100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKRKRSEAAQAVVPPKKDDVAPERPARTLLGWKDKNVVNQDDEVNENGHSPVFRNKEKVLVTCSRRIIYRYRHLMLNV VSLLPHCKKDNKVESKETKGATLNELVELKNCSSCLFFECRKAKDLFLWMSKCPNGPSVKFLVSAVHTMEELKLTGNHLK ASRPLLTFSTNFEKDAHWKLLKEMLLQIFETPKDHRKSKPFHDHVFVFSIVDDHIWFRNYQISVPHNESDKLPRGGLDKM TLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKRKKAGKFAKKVKAKTRRKMHEMANPLEPDEFADMWKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 319 | 319 | 2.1E-180 | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 319 | 319 | 2.1E-180 | ||
| ProSiteProfiles | 59 | 262 | 204 | 32.623 | ||
| SUPERFAMILY | 60 | 259 | 200 | 2.55E-15 | – | |
| SMART | 62 | 256 | 195 | 1.4E-50 | ||
| Pfam | 68 | 255 | 188 | 2.4E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0523100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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