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LotjaGi1g1v0523700.2

Overview

Field Value
Gene ID LotjaGi1g1v0523700
Transcript ID LotjaGi1g1v0523700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description S-adenosylmethionine decarboxylase proenzyme; TAIR: AT3G02470.1 S-adenosylmethionine decarboxylase; Swiss-Prot: sp|Q96471|DCAM_IPONI S-adenosylmethionine decarboxylase proenzyme; TrEMBL-Plants: tr|A0A0R4J5V8|A0A0R4J5V8_SOYBN S-adenosylmethionine decarboxylase proenzyme; Found in the gene: LotjaGi1g1v0523700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:104865296..104866378) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCCTTGACAAGCTCAGCTATTGGTTTTGAAGGCTATGAAAAGAGGCTTGAGATATCATTTTATGAGCGTGGTGTGTT TGCTGACCCTGAAGGATTAGGCCTCCGAGAATTGTCTAGAGACCAATTGGATGAGATTCTGAACCCAGCACAGTGCACTA TTGTTGGCTCTCTGTCAAATGATTATGTTGATTCTTATGTTCTTTCGGAGTCAAGCCTGTTTGTCTATCCTTACAAAGTT ATCATCAAAACTTGCGGAACTACGAAATTGCTTCTGTCCATCCCTGTCATTCTTAAGCTTGCTGATTCCCTTAACATTGC TGTGAAATCTGTGAGGTACACTCGTGGAAGCTTCATTTTCCCTGAGGCACAGCCATTCCCTCACCGTAACTTCTCAGAGG AAGTTGCTGTTCTTAACAACTATTTCGGAAATCTTGGTTCTGGTGGCCAAGCTTATGTGATGGGTGACCCTGACAAGTCA CAAATTTGGCACATCTATGCTGCTAGTGCAGAGCCAAAAGGCTCATCAGAAGCCGTCTATGGCCTTGAGATGTGCATGAC GGGTTTGGATAAGGAAAGTGCATCTGTGTTTTTCAAAGACAACACATCTTCAGCAGCTTTGATGACAACAAACTCTGGAA TCAATAAGATCCTTCCACAATCTGATATATGTGATTTTGAATTTGACCCTTGTGGTTATTCAATGAATGGAATAGAAGGA AGTGCAATATCCACCATCCATGTTACCCCAGAAGATGGTTTCAGCTACGCAAGTTTTGAAGCTGTGGGTTATGACTATGA AGACCTGTCTCTGACCGAACTTGTTGAAAGGGTTTTGGCATGCTTCCATCCAGCTGAGTTTTCTGTTGCTCTGCACATGG ACATGCATGGTGAAAAACTTGACAAGTTTCCCCTGGATATTGAAGGATACTACTGTGACAAGAGGGGCACTGAAGAGCTT GGAGCTGGTGGCGCAGTTATGTTCCATAGCTTCGTTCGAGTTGATGGCTGTGCATCTCCAAAGTCTATTCTGAAATGCTG CTGGAGTGAAGATGAGAACGACGAGGAAGTGAAGGGGATATAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0523700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCTTGACAAGCTCAGCTATTGGTTTTGAAGGCTATGAAAAGAGGCTTGAGATATCATTTTATGAGCGTGGTGTGTT TGCTGACCCTGAAGGATTAGGCCTCCGAGAATTGTCTAGAGACCAATTGGATGAGATTCTGAACCCAGCACAGTGCACTA TTGTTGGCTCTCTGTCAAATGATTATGTTGATTCTTATGTTCTTTCGGAGTCAAGCCTGTTTGTCTATCCTTACAAAGTT ATCATCAAAACTTGCGGAACTACGAAATTGCTTCTGTCCATCCCTGTCATTCTTAAGCTTGCTGATTCCCTTAACATTGC TGTGAAATCTGTGAGGTACACTCGTGGAAGCTTCATTTTCCCTGAGGCACAGCCATTCCCTCACCGTAACTTCTCAGAGG AAGTTGCTGTTCTTAACAACTATTTCGGAAATCTTGGTTCTGGTGGCCAAGCTTATGTGATGGGTGACCCTGACAAGTCA CAAATTTGGCACATCTATGCTGCTAGTGCAGAGCCAAAAGGCTCATCAGAAGCCGTCTATGGCCTTGAGATGTGCATGAC GGGTTTGGATAAGGAAAGTGCATCTGTGTTTTTCAAAGACAACACATCTTCAGCAGCTTTGATGACAACAAACTCTGGAA TCAATAAGATCCTTCCACAATCTGATATATGTGATTTTGAATTTGACCCTTGTGGTTATTCAATGAATGGAATAGAAGGA AGTGCAATATCCACCATCCATGTTACCCCAGAAGATGGTTTCAGCTACGCAAGTTTTGAAGCTGTGGGTTATGACTATGA AGACCTGTCTCTGACCGAACTTGTTGAAAGGGTTTTGGCATGCTTCCATCCAGCTGAGTTTTCTGTTGCTCTGCACATGG ACATGCATGGTGAAAAACTTGACAAGTTTCCCCTGGATATTGAAGGATACTACTGTGACAAGAGGGGCACTGAAGAGCTT GGAGCTGGTGGCGCAGTTATGTTCCATAGCTTCGTTCGAGTTGATGGCTGTGCATCTCCAAAGTCTATTCTGAAATGCTG CTGGAGTGAAGATGAGAACGACGAGGAAGTGAAGGGGATATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0523700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALTSSAIGFEGYEKRLEISFYERGVFADPEGLGLRELSRDQLDEILNPAQCTIVGSLSNDYVDSYVLSESSLFVYPYKV IIKTCGTTKLLLSIPVILKLADSLNIAVKSVRYTRGSFIFPEAQPFPHRNFSEEVAVLNNYFGNLGSGGQAYVMGDPDKS QIWHIYAASAEPKGSSEAVYGLEMCMTGLDKESASVFFKDNTSSAALMTTNSGINKILPQSDICDFEFDPCGYSMNGIEG SAISTIHVTPEDGFSYASFEAVGYDYEDLSLTELVERVLACFHPAEFSVALHMDMHGEKLDKFPLDIEGYYCDKRGTEEL GAGGAVMFHSFVRVDGCASPKSILKCCWSEDENDEEVKGI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.360.50
1 70 70 4.9E-31 –
PIRSF
PIRSF001355
2 334 333 4.2E-107
IPR001985
PANTHER
PTHR11570:SF23
3 358 356 2.1E-200 –
PANTHER
PTHR11570
3 358 356 2.1E-200
IPR001985
Pfam
PF01536
9 331 323 7.2E-107
IPR001985
TIGRFAM
TIGR00535
10 333 324 1.4E-124
IPR001985
SUPERFAMILY
SSF56276
13 333 321 2.45E-123
IPR016067
ProSitePatterns
PS01336
65 75 11 -
IPR018166
Gene3D
G3DSA:3.60.90.10
71 334 264 3.8E-97 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004014
Molecular function Adenosylmethionine decarboxylase activity Catalysis of the reaction: S-adenosyl-L-methionine + H(+) = S-adenosylmethioninamine + CO(2).
Subterm of
GO:0006597
Biological process Spermine biosynthetic process The chemical reactions and pathways resulting in the formation of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging.
Subterm of
GO:0008295
Biological process Spermidine biosynthetic process The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0523700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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