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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0526900 |
| Transcript ID | LotjaGi1g1v0526900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication factor-A carboxy-terminal domain protein; TAIR: AT1G52950.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q10Q08|RFA1B_ORYSJ Replication protein A 70 kDa DNA-binding subunit B; TrEMBL-Plants: tr|G7IGJ6|G7IGJ6_MEDTR Replication factor-A carboxy-terminal domain protein; Found in the gene: LotjaGi1g1v0526900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105403990..105406892) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAATACCATGATTTTCCCACTGCTACCTACCTCTGTGTGATTCATGTGTTTCTCCCCCTTTTCAAATTTGAAAAAAA AAAAAAATACATTCTCCAATTCTGTGATTCTCCCGGTTTCTACTTTTTTCCAACTATAAATTTAGTACAAGGCCATTGTA TCTACCACACCCACCCACCAACGTTGATTTGCTTACCATTCCCTGTACGTTTTACTTCCTTTCTGAGTGATTTGTGATGG AGTCTGTTTACCATAATGTTGCTGAGCTTCGTTCTGGGAAGCAACATTGGAGGATTATGGTGAAGGTGATCCGGATTTGG TACAGCCAAGGGTTTGCCACATCGAAGTTGCCCCTTTCTCTTGAGCTTGTCCTGATGGATGATAAGGTACTGGCTTGATA TCGTTTTGTCTATTTGTCTATGTTATACATTTATTTTCCAGAATAATATTAAATATTCCGTGTTGGTAATGGTTGTATGC CTCTTTACTTTGAAGGGTACCAAGATCCATGCCAGTATTAAAAAGACTCTGATGTACAAGTTTGAGAAGTTACTGGTTGA GGGGAAGGTTTACAGTGTGTCCTCATTTGTGTTAGTGGATAGTAGTGGGGAGTATAAAACTACACGTCATAATTACAAGA TATGTTTCATGTATAACACTGAAGTGCGCCCAATGGACCAGTTTCCTATTGATGCGTTCCCCTACAGCTTTGTTCCTCTA GCTGACCTTTTAGCTCCTACCTATGATTCCTCTTTCCTAATTGGTATCATTTTAGACTTTTATCTGCCTATGACAATTAT GTGTTCCACCCCTTTAACAATTTCGTATTCCATATGGTTATGTTTTGCAGATGTGATTGGCATTCTAACCGGCGTTGGAG TTGAGAGGGAGATTGTTACTAATGGGAAGAAATCAAAGATGAATGTGATTGAGATTGATTCTGCAGGGTAATTTCCCTTA AGTTTTTGGATTATTTGATTTTCATCGTTTGAACCTATAATGTAGTCATTCACATTTACTTCCAGGGTCAGGGTTGAGTG CGCCCTATTCGGAGCTTATGTTGATGAGCTTGCTAATTTTCTTGGCGGTGGTGAACTCAACAACCCTGTCGTGATCATAC AGTTTGCTAAAGTCAAATCCTTTCAGGGGCACAACAGCCTTCAAAATGTTCATGGGACTACTAAAATTCTGTTTGACCCA GATCTACCAATGGCTGATGTTTTGAAAACCAGGTATGCGTCTATGTTTTGGACTTTAAATTTTAGTCATTGAAATTGTGT ACTTGATTGTCTGCCCAATGTTCCTTGCAGTTTTTTGGAAGCCAATGAAAGTGCATCGCACTCTGTTAGCCAATTGTCTG ATTCCAAAACCGTTTCTGGCGAGGATGATTTCCTGGTTCTGACAATTAGCAAGTCTATTGCTGATTTGAGGGAAATCAAG AAGGTTTGAGATTGCATCTCATTGTTATCAAATGAGAAATGTTGATAACTCTTGCGTTATATGCCAGACTTTTGATGATA ATATTATTTGTTTGTGTAGGATTGTGTCTGTGTTGTGTATGGTACCATTCTTCCTCTTGAAGAAGGTGTTGATTGGTGGT ACACTGCCTGTAGATGTAGCCGCAAGGTGTATGCTGATGAAAGGATGTTTTTCTGTGAGGGATGTAACCGTCACGTGCTG GCCGTCTATCCTAGGTTTGGTTGACTTCATTTTAAATGTTCTCATGGTAACGTTGGGTGGTTAGATAGTAATGGTATATT TCATTTGGTTTAGGTATCGTCTTCAAGTCAGGGTGGAAGATAATTCTGGCAGTGCAAACTTTATCCTCTTTGATAAAGAA GCCACTGCACTGGTTGGGAAAACTTGCTCTGAAATGGTTGATGCTTGTGACAAGGTATGTTTCAACATTATATTTTTTTA ACGAACAACCTGTGGCCAAGTTAAAATTTTTATTGGTTGTATATAACTTTCAGAATGATAATGGGATGGGGATTCCTGTT GAATTAACTAGCTTTGTTGGGAGATCTGCTCTTTTCAAGATTGAGGTTAAAAATTTCCAAGGTCAGAGGTTTGACAGGTC CAGATTTGAGACTTCATATCGTGTAAAGCGTGTCTGCACTGATCAATCGATTATTGAGCAGTTCAAAACATTGCAGTTAG ATAACAGTGTAGGTGTTTCTCTACCTTATTTTTGTTATGTTTATTTACCTAATGCTGGTCCTGATCTTAATGAATACGGG ATAAAGGTTGGTGCCTCTTCAAGTCGTTTGCTGCTCACCCCTCAGTCTACTCTGAATCCAGAAGCTGTGAAGCATGAGGA ATTAGCGAAGGTTTATATTTTTAGAAGTATGTTATTGTTCCTTCTTTACCACATTATATAGACAAGGTTATAATTAAGTA TTAATTGATATTTTTGCAGGATTTGTTGGAAGACTTTGCTGTTGTGTCCAATGAGAAAGCCACCCAAACTGAAGAATCTT TGGAAGGTCCTGCGAATCAACCTGCTATGTCATTGGAATCTCCAGCGATTGATCTAGCTGGAAATACTCAAGACATCATC AGTCCTAAGAGGAGTCCTTCACCTGAGAACGATGGTGTGTTGGTTTTGACGGGCAGGAAGAAGAAGGTGTTTCCAAAGAT GAGGAAGTAGAAGAATTGAGACCTATCATATTGACGATGCAGTTGTTTTAAATGTATTTGGTGTAATTTTAAGTTGTTAA GAAGCAACATGTGGTTGCAGTGTCTTTTTTCACCTTATTATCTATGTTATGTTTTTAAATTCCAGTCTGCTATTTCAATT GCTGTTGTTTGTTCCAAGAAATACCAGTTCCCATGGACATGGTCATCAATATAAATATGAAAGTAGTATTTTGCGTCGTC AATTAGGTACTTTTGTAGTGGAC
CDS sequence (LotjaGi1g1v0526900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTGTTTACCATAATGTTGCTGAGCTTCGTTCTGGGAAGCAACATTGGAGGATTATGGTGAAGGTGATCCGGAT TTGGTACAGCCAAGGGTTTGCCACATCGAAGTTGCCCCTTTCTCTTGAGCTTGTCCTGATGGATGATAAGGGTACCAAGA TCCATGCCAGTATTAAAAAGACTCTGATGTACAAGTTTGAGAAGTTACTGGTTGAGGGGAAGGTTTACAGTGTGTCCTCA TTTGTGTTAGTGGATAGTAGTGGGGAGTATAAAACTACACGTCATAATTACAAGATATGTTTCATGTATAACACTGAAGT GCGCCCAATGGACCAGTTTCCTATTGATGCGTTCCCCTACAGCTTTGTTCCTCTAGCTGACCTTTTAGCTCCTACCTATG ATTCCTCTTTCCTAATTGATGTGATTGGCATTCTAACCGGCGTTGGAGTTGAGAGGGAGATTGTTACTAATGGGAAGAAA TCAAAGATGAATGTGATTGAGATTGATTCTGCAGGGGTCAGGGTTGAGTGCGCCCTATTCGGAGCTTATGTTGATGAGCT TGCTAATTTTCTTGGCGGTGGTGAACTCAACAACCCTGTCGTGATCATACAGTTTGCTAAAGTCAAATCCTTTCAGGGGC ACAACAGCCTTCAAAATGTTCATGGGACTACTAAAATTCTGTTTGACCCAGATCTACCAATGGCTGATGTTTTGAAAACC AGTTTTTTGGAAGCCAATGAAAGTGCATCGCACTCTGTTAGCCAATTGTCTGATTCCAAAACCGTTTCTGGCGAGGATGA TTTCCTGGTTCTGACAATTAGCAAGTCTATTGCTGATTTGAGGGAAATCAAGAAGGATTGTGTCTGTGTTGTGTATGGTA CCATTCTTCCTCTTGAAGAAGGTGTTGATTGGTGGTACACTGCCTGTAGATGTAGCCGCAAGGTGTATGCTGATGAAAGG ATGTTTTTCTGTGAGGGATGTAACCGTCACGTGCTGGCCGTCTATCCTAGGTATCGTCTTCAAGTCAGGGTGGAAGATAA TTCTGGCAGTGCAAACTTTATCCTCTTTGATAAAGAAGCCACTGCACTGGTTGGGAAAACTTGCTCTGAAATGGTTGATG CTTGTGACAAGAATGATAATGGGATGGGGATTCCTGTTGAATTAACTAGCTTTGTTGGGAGATCTGCTCTTTTCAAGATT GAGGTTAAAAATTTCCAAGGTCAGAGGTTTGACAGGTCCAGATTTGAGACTTCATATCGTGTAAAGCGTGTCTGCACTGA TCAATCGATTATTGAGCAGTTCAAAACATTGCAGTTAGATAACAGTGTTGGTGCCTCTTCAAGTCGTTTGCTGCTCACCC CTCAGTCTACTCTGAATCCAGAAGCTGTGAAGCATGAGGAATTAGCGAAGGATTTGTTGGAAGACTTTGCTGTTGTGTCC AATGAGAAAGCCACCCAAACTGAAGAATCTTTGGAAGGTCCTGCGAATCAACCTGCTATGTCATTGGAATCTCCAGCGAT TGATCTAGCTGGAAATACTCAAGACATCATCAGTCCTAAGAGGAGTCCTTCACCTGAGAACGATGGTGTGTTGGTTTTGA CGGGCAGGAAGAAGAAGGTGTTTCCAAAGATGAGGAAGTAG
Protein sequence (LotjaGi1g1v0526900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESVYHNVAELRSGKQHWRIMVKVIRIWYSQGFATSKLPLSLELVLMDDKGTKIHASIKKTLMYKFEKLLVEGKVYSVSS FVLVDSSGEYKTTRHNYKICFMYNTEVRPMDQFPIDAFPYSFVPLADLLAPTYDSSFLIDVIGILTGVGVEREIVTNGKK SKMNVIEIDSAGVRVECALFGAYVDELANFLGGGELNNPVVIIQFAKVKSFQGHNSLQNVHGTTKILFDPDLPMADVLKT SFLEANESASHSVSQLSDSKTVSGEDDFLVLTISKSIADLREIKKDCVCVVYGTILPLEEGVDWWYTACRCSRKVYADER MFFCEGCNRHVLAVYPRYRLQVRVEDNSGSANFILFDKEATALVGKTCSEMVDACDKNDNGMGIPVELTSFVGRSALFKI EVKNFQGQRFDRSRFETSYRVKRVCTDQSIIEQFKTLQLDNSVGASSSRLLLTPQSTLNPEAVKHEELAKDLLEDFAVVS NEKATQTEESLEGPANQPAMSLESPAIDLAGNTQDIISPKRSPSPENDGVLVLTGRKKKVFPKMRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 439 | 435 | 1.6E-118 | – | |
| Gene3D | 5 | 112 | 108 | 1.7E-22 | – | |
| PANTHER | 5 | 439 | 435 | 1.6E-118 | – | |
| SUPERFAMILY | 5 | 114 | 110 | 4.71E-15 | ||
| CDD | 19 | 107 | 89 | 1.09709E-27 | – | |
| Pfam | 43 | 136 | 94 | 2.2E-15 | ||
| Gene3D | 115 | 253 | 139 | 1.0E-22 | – | |
| SUPERFAMILY | 120 | 242 | 123 | 2.27E-15 | ||
| CDD | 140 | 242 | 103 | 1.23289E-17 | – | |
| Gene3D | 262 | 432 | 171 | 1.5E-19 | – | |
| CDD | 277 | 424 | 148 | 5.68988E-27 | ||
| SUPERFAMILY | 281 | 411 | 131 | 1.88E-21 | ||
| Pfam | 292 | 414 | 123 | 1.5E-14 | ||
| MobiDBLite | 483 | 546 | 64 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0526900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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