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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0532500 |
Transcript ID | LotjaGi1g1v0532500.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Plant protein 1589 of Uncharacterized protein function; TAIR: AT3G55240.1 Plant protein 1589 of unknown function; Swiss-Prot: sp|Q8B0U2|L_LBVAV RNA-directed RNA polymerase L; TrEMBL-Plants: tr|A0A151S7F0|A0A151S7F0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0532500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105947311..105950308) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGAGCCTTCTAATTCTTCTGCTTCATACATTCATCTGGTAAGAAATCTTGGGTTTTCGTCTTAATTTTTCATTTT AATGAGTTGATCATATATGTAGACCAAGTCATACATGTATACATATTCATGATGACATGTTTGTGCAAAAAATAGGTGCA GCACCTGATTGAGAAGTGTTTGATCTATCACATGACAAAGGAAGAGTGCATGGAAGCTCTCTCTAAGCATGCAAATATCA AACCTGTCATAACATCCACTGGTATGTTAATAATCACTCTTAATATTTCATTCCAAGCCATCTAGTTTGAAAAACTAATA TAGCATAACTATATATAGGACCAAGGAACATGTGCATGTCGTGTAAAATTGAAGAGATATGCATGATATGACAGGATCAT TTCAAAAGAATTGAAGTAACTTATACCTAGCCAGTTATGAATAAAGTAATTTATTGAGCTAGAGTTTTCCAACTCTAATT CATTCTTGACAATTCCTAATGGAGTGTATAGCACTCTGTTAGGAATATATGATGTATTGTACTATTAGGATTAGGCAGAA GTAGCTTATTGTATAAGCTGCTAGTCTTAGTTATAAATAGATCAATTGTGTACTGTGTCAATTACCAATTATCATAATAA CAAAATTCAGTTAGAAAGCTTTCTCTCTCTTCTCTCTTTTCTGTTTTGTTTCTGTTATGGTATCAGAGCTTGAAATCTCG GAAACTCCATGGCTAGCGCCGGAGATCCACTACCTACCTCGCCACGCCCAGTACCGCCGTCACCGCCGCGTTCGCCGCCG TGCGTTCAACCCCTGAATGTTACGTCATCACTGTTACCACGCAATTCTACAACGTTCTCTCATGCGATCACTGAGAAGTT GTCAGATTCGAACTTTCTTCTCTGGAAACAGCAAGTTGAAAAGTTATTTGTGGGACAACATATTAAAATTCCTCATATTT TAGGACATGTTTGTTTAAGTTTAAAATAAATATGATTTGTAACACGGTAAATTAAATACAAATACGTACTAGTTACCTTT TAGAACTTTTTATAAAAAAAACATACAGAAGCTGATTTGTGTTTGAGTTGATTATAAAAAAAGTTCTTTAATTATTTCAG GATGATTTCTCTCTTCTAACGAAGACTATATTAAGAAATCTCTATTCCAAACAACTTATAATTATGATATTAAAATCAAT TATTTTAAAAATGATTATTGACAAAAACTTTCCCAAACAACCTAACAAATGATTATTGACAAAAAATTTCCCAAACAACT AAGCACTCTTAATATATTTTATGAAAAAAACTTAAACAAATGAATTCTTACTCTTCACCAGTTTCTGTTTTAAATTTAGT GACCATACAAAGATTAATTGTTAGTTCAGTCCTTTGTGAGACAATACTCGAGACAAATCTAATCAAAAGAAGTAATAAAT TTATTATATTATGAAAATTTGTTTGAAACCTAATTAGTTTCGAATGAGCCAATAAATTGGTTAGACGGTCCATCCTTTAA AAGAATGTGTGTTCGATTCTCGCTATTAATATGATGACTGTGTTGGTGGACAATATAAAAATATCTCTATAAACGACCTA TAGTCTCTGAGCATGCCTTGATCCGTGACAGTAATTGTAGTTGAATTTACCCAAACTCTATTCACTGGAAAAAAAAAATT CATATGAATATATTGACAAGTAAGGGATCAAATTGATATATTATTATACGCACCCTAGTACCTGATGTGAAATTTCAAGG GACTTGATAGATATGTCTAAGATTGAAAGATGAAGAGTACTATTATTCAATACAACTACTCTCTCCGGTCCTATTTATAA GCAACAAAAAAAATTCACATAGTTTAAGAAATGTAGTTAAACTAGATAAAATGCATTAAATATGTCTTGAATCAAAATAA ACTTCCAAAATTACCCTTTATTATTAGTGTTGGAAAGTGAAAAAGAGAGAGAATAATTAATGAGACACATTTTACAAGTT AGAATTAATAAGGGCATCATTGGAAAAAAATCATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAAATGACCAAAA TTTTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGAGAGTTTTTTCATTGATCTAGCTACGTATCCTCCCTTGAAATT AAGGAGAAATGTGAATATAAGTATGTTTGTATCATTTCTATTTCTCCTATGACACCTCCAACAAACAATCCAAACACACA ACAACATTCAGAGTATACACATTTTGAAAATTCAAGTGTAAGTTTGAGCCACATATTAATTAAATATGAGTGAGATGAAA ATTTTATAAAAAAAATGTGACCATAAACCAATGTCTTTAGATTTTGGGTGAAGATGTTGCGTCAAAGTTCTTTTTGTGTC TTATTTTCGTAGCCCATGAGCCCCGCCATCTCTCCAACAAGCAATATCAAAGTCAATGGTTAATAACGACTCATTGTATC AAAAGTCTTCCTACATGTGTGGTTATGCAGCATGTTTAGAATTTAAATATGAGTTAAAGTCCCACATTAATTAAATATGA GTGATGTAAAAATTTTATTAGAAATACGACTTATAAACTCAATGTTTTTATGTTTTTGGTAAAGTTATAACATCCGATTC TCGAACATGATTGACAAATATACTATTTCGCCAAACACCCTTCGAACATAAAATTTAGCGGCAACTTTTAAGTGCTACTA TAAGTCATATGTTTGAAGAGTGCAAAATATATATAATCACTTTTTAAGGAACATGTGCATGATGAAGCATATATATACAT AAATAATATAGTAACAATTGCAGTGTGGAATGAGCTGGAGAAAGAAAACAAGGAGTTTTTTGAGGCCTATGCAAAATCTA AGAGTAAAGACGATCGAATGTCCGAGGAAGAGACAAACCAAATGATACAGAAGATGATCTCAGATTCCTCTAAAGGCTCA AGCCCTTGAAAACGATCTCGCCTTTGTGTTTTGCTGCA
CDS sequence (LotjaGi1g1v0532500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGCCTTCTAATTCTTCTGCTTCATACATTCATCTGGTGCAGCACCTGATTGAGAAGTGTTTGATCTATCACAT GACAAAGGAAGAGTGCATGGAAGCTCTCTCTAAGCATGCAAATATCAAACCTGTCATAACATCCACTGTGTGGAATGAGC TGGAGAAAGAAAACAAGGAGTTTTTTGAGGCCTATGCAAAATCTAAGAGTAAAGACGATCGAATGTCCGAGGAAGAGACA AACCAAATGATACAGAAGATGATCTCAGATTCCTCTAAAGGCTCAAGCCCTTGA
Protein sequence (LotjaGi1g1v0532500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEPSNSSASYIHLVQHLIEKCLIYHMTKEECMEALSKHANIKPVITSTVWNELEKENKEFFEAYAKSKSKDDRMSEEET NQMIQKMISDSSKGSSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 92 | 92 | 4.7E-51 | – | |
PANTHER | 1 | 92 | 92 | 4.7E-51 | ||
TIGRFAM | 12 | 66 | 55 | 1.1E-24 | ||
Pfam | 15 | 66 | 52 | 6.8E-27 | ||
MobiDBLite | 67 | 97 | 31 | - | – | |
MobiDBLite | 81 | 97 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0532500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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