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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006476
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.902s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0326379.1
n.a. Plant protein 1589 of Uncharacterized protein function [Theobroma cacao] gi|508708632|gb|EOY00529.1| chr0 170614765 170616265 -
3 domain predictions
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Lj0g3v0326379.2
n.a. Plant protein 1589 of Uncharacterized protein function [Theobroma cacao] gi|508708632|gb|EOY00529.1| chr0 170615272 170616265 -
3 domain predictions
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Lj1g3v3182420.1
n.a. Plant-specific domain TIGR01589 family protein [Medicago truncatula] gi|357502991|ref|XP_003621784.1| chr1 36187836 36191327 -
3 domain predictions
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Lj1g3v4171210.1
n.a. Plant protein 1589 of Uncharacterized protein function isoform 4 [Theobroma cacao] gi|508717123|gb|EOY09020.1| chr1 49530306 49536431 +
3 domain predictions
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Lj1g3v4171210.2
n.a. Plant protein 1589 of Uncharacterized protein function isoform 4 [Theobroma cacao] gi|508717123|gb|EOY09020.1| chr1 49530411 49536431 +
3 domain predictions
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Lj1g3v4171210.3
n.a. Plant protein 1589 of Uncharacterized protein function isoform 4 [Theobroma cacao] gi|508717123|gb|EOY09020.1| chr1 49530414 49536431 +
3 domain predictions
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Lj1g3v4575260.1
n.a. Plant protein 1589 of Uncharacterized protein function [Theobroma cacao] gi|508715727|gb|EOY07624.1| chr1 54065506 54067039 -
3 domain predictions
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Lj1g3v5034710.1
n.a. Plant protein 1589 of Uncharacterized protein function isoform 1 [Theobroma cacao] gi|508703833|gb|EOX95729.1| chr1 61505486 61509988 +
3 domain predictions
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Lj3g3v2440670.1
n.a. Plant protein 1589 of Uncharacterized protein function isoform 1 [Theobroma cacao] gi|508703833|gb|EOX95729.1| chr3 30063544 30069224 +
3 domain predictions
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LotjaGi1g1v0532500.1
n.a. Plant protein 1589 of Uncharacterized protein function; TAIR: AT3G55240.1 Plant protein 1589 of unknown function; Swiss-Prot: sp|Q8B0U2|L_LBVAV RNA-directed RNA polymerase L; TrEMBL-Plants: tr|A0A151S7F0|A0A151S7F0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0532500 LjG1.1_chr1 105947311 105950308 -
4 domain predictions
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LotjaGi1g1v0532500.2
n.a. Plant protein 1589 of Uncharacterized protein function; TAIR: AT3G55240.1 Plant protein 1589 of unknown function; Swiss-Prot: sp|Q8B0U2|L_LBVAV RNA-directed RNA polymerase L; TrEMBL-Plants: tr|A0A151S7F0|A0A151S7F0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0532500 LjG1.1_chr1 105947340 105950320 -
4 domain predictions
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LotjaGi1g1v0666200.1
n.a. Histidine--tRNA ligase; TAIR: AT3G10250.1 histidine-tRNA ligase; Swiss-Prot: sp|Q9NPE2|NGRN_HUMAN Neugrin; TrEMBL-Plants: tr|A0A1J7IF97|A0A1J7IF97_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0666200 LjG1.1_chr1 122838228 122845047 -
4 domain predictions
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LotjaGi1g1v0666200.2
n.a. Plant protein 1589 of unknown function; TAIR: AT3G10250.1 histidine-tRNA ligase; Swiss-Prot: sp|Q3TN34|MILK2_MOUSE MICAL-like protein 2; TrEMBL-Plants: tr|A0A1J7IF97|A0A1J7IF97_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0666200 LjG1.1_chr1 122838228 122845047 -
4 domain predictions
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LotjaGi1g1v0666200.3
n.a. Plant protein 1589 of unknown function; TAIR: AT3G10250.1 histidine-tRNA ligase; Swiss-Prot: sp|A0JME2|MCAF1_DANRE Activating transcription factor 7-interacting protein 1; TrEMBL-Plants: tr|A0A1J7IF97|A0A1J7IF97_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0666200 LjG1.1_chr1 122838477 122845046 -
4 domain predictions
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LotjaGi1g1v0666200.4
n.a. Plant protein 1589 of unknown function; TAIR: AT3G10250.1 histidine-tRNA ligase; Swiss-Prot: sp|A0JME2|MCAF1_DANRE Activating transcription factor 7-interacting protein 1; TrEMBL-Plants: tr|A0A1J7IF97|A0A1J7IF97_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0666200 LjG1.1_chr1 122838675 122844821 -
4 domain predictions
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LotjaGi1g1v0791900.1
n.a. helicase with zinc finger protein; TAIR: AT2G46420.1 helicase with zinc finger protein; Swiss-Prot: sp|Q1QT79|ARGB_CHRSD Acetylglutamate kinase; TrEMBL-Plants: tr|I1NCK6|I1NCK6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0791900 LjG1.1_chr1 136384296 136392739 +
4 domain predictions
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LotjaGi2g1v0100100_LC.1
n.a. helicase with zinc finger protein; TAIR: AT2G46420.1 helicase with zinc finger protein; Swiss-Prot: sp|Q9HIX6|CBIA_THEAC Cobyrinate a,c-diamide synthase; TrEMBL-Plants: tr|I1NCK6|I1NCK6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0100100_LC LjG1.1_chr2 33311042 33312043 -
2 domain predictions
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LotjaGi3g1v0394400.1
n.a. helicase with zinc finger protein; TAIR: AT2G46420.1 helicase with zinc finger protein; Swiss-Prot: sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain; TrEMBL-Plants: tr|A0A0L9T4H0|A0A0L9T4H0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0394400 LjG1.1_chr3 79420916 79426872 +
4 domain predictions
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LotjaGi3g1v0394400.2
n.a. helicase with zinc finger protein; TAIR: AT2G46420.1 helicase with zinc finger protein; Swiss-Prot: sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain; TrEMBL-Plants: tr|A0A0L9T4H0|A0A0L9T4H0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0394400 LjG1.1_chr3 79422607 79426363 +
4 domain predictions
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LotjaGi3g1v0394400.3
n.a. helicase with zinc finger protein; TAIR: AT2G46420.1 helicase with zinc finger protein; Swiss-Prot: sp|Q04F69|SYGB_OENOB Glycine--tRNA ligase beta subunit; TrEMBL-Plants: tr|A0A0L9T4H0|A0A0L9T4H0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0394400 LjG1.1_chr3 79422723 79426363 +
2 domain predictions
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LotjaGi3g1v0394400.4
n.a. helicase with zinc finger protein; TAIR: AT2G46420.1 helicase with zinc finger protein; Swiss-Prot: sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain; TrEMBL-Plants: tr|A0A0L9T4H0|A0A0L9T4H0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0394400 LjG1.1_chr3 79422723 79426368 +
4 domain predictions
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LotjaGi4g1v0153700.1
n.a. Plant protein 1589 of Uncharacterized protein function; TAIR: AT1G10657.2 transmembrane protein; Swiss-Prot: sp|P28742|KIP1_YEAST Kinesin-like protein KIP1; TrEMBL-Plants: tr|A0A151RG83|A0A151RG83_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0153700 LjG1.1_chr4 25753794 25755402 -
4 domain predictions
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LotjaGi4g1v0153700.2
n.a. Plant protein 1589 of Uncharacterized protein function; TAIR: AT1G10657.2 transmembrane protein; Swiss-Prot: sp|P28742|KIP1_YEAST Kinesin-like protein KIP1; TrEMBL-Plants: tr|A0A151RG83|A0A151RG83_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0153700 LjG1.1_chr4 25753794 25755402 -
4 domain predictions
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LotjaGi4g1v0153700.3
n.a. Plant protein 1589 of Uncharacterized protein function; TAIR: AT1G10657.3 transmembrane protein; Swiss-Prot: sp|P28742|KIP1_YEAST Kinesin-like protein KIP1; TrEMBL-Plants: tr|V7C8R5|V7C8R5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0153700 LjG1.1_chr4 25754584 25755120 -
4 domain predictions
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LotjaGi5g1v0132900.1
n.a. Histidine--tRNA ligase; TAIR: AT3G10250.1 histidine-tRNA ligase; Swiss-Prot: sp|P34763|NMT_AJECA Glycylpeptide N-tetradecanoyltransferase; TrEMBL-Plants: tr|A0A072VI51|A0A072VI51_MEDTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0132900 LjG1.1_chr5 31114497 31128525 -
4 domain predictions
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LotjaGi5g1v0357800.1
n.a. Plant protein 1589 of Uncharacterized protein function; TAIR: AT3G55240.1 Plant protein 1589 of unknown function; Swiss-Prot: sp|Q30UH5|PURA_SULDN Adenylosuccinate synthetase; TrEMBL-Plants: tr|B7FMI5|B7FMI5_MEDTR Uncharacterized protein; Found in the gene: LotjaGi5g1v0357800 LjG1.1_chr5 67243399 67246598 +
4 domain predictions
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