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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0534200 |
| Transcript ID | LotjaGi1g1v0534200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT2G39490.1 F-box family protein; Swiss-Prot: sp|Q5S4V7|FB129_ARATH F-box protein At2g39490; TrEMBL-Plants: tr|A0A0B2R5G9|A0A0B2R5G9_GLYSO F-box protein; Found in the gene: LotjaGi1g1v0534200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106251717..106254038) extracted from Lotus japonicus Gifu genome v1.2.
ATCAATTATTTTTCTAAAGTTGTTAGTAGTATTGATGTCATTGTACATCTTTGTTCTAAGTCCAAGCAAAATCATATCGA GAAACAGGAGATTCTAATATGGAAGATAACACTGCAAAGGATCTATTCAGCAATTTACCAAATGAAATTCTGAGGCACAT TGTTTCATTTCTTCCAAATGAATCTGCAATTGAAACCATCTTTCTCTCTACAAGGTGGAGGAACCTGTGGAGTGAAGCTC TTGTTAGACATGGAACTAAAGAAAACATCACTCAGGTGGTTGCTGGATTTCTACAGCGTTTTGAGGAGCTTGATCCATTG AAGCATCCAAGGAAGCTTCAATTTCACTTTGGTGAAGATAGAATAGTCATGGCAACAATTGCAAACAACAGTAAGCTTTT TTTGGATTTCTCCCCTTGGAAGAAAGAGCTTATTGAAATTCAATATGAATTGCAGTTCAAGCTCAGTAAAATGCAATCTT TTACCTCCAACATCTCAGTGAAAACTCTCTATTTGAAGTCAATAAGCTATTTGACAAGTGGGGTAGCTTCCACCATCATT TCAAATTTAGAGCATCTTGAGAATTTGGTCATTATTGAGTGTAGTGGGTTGCAATCTTTGAGCATTGACTCTGCATCAGA GCTGCAAAAGTTAACCATCCGGGATTGCTTACAATTGAAGTCTCTTCACCTTAGAACTTCCAAACTCAAATCTTTTCAAA TAAGTGGACCGCTTCCTTTGATTAGGCCTGAGTACCATTTCAACCTGAGTGATGCCATGCTTGATTTTAGACTGGGACCA AGCTGCAGAAATTTCAAGACTAGGGATTTTGATGCAACTCTATTGACTATAAAGAACTCTCAAGTTCTCACACTTTGTAA ATGGACTTTTGAGGTAAGAACCTGTCCATTTATCTTGCTTATTTTTATCTTTTTTCGTACATTGAGAACTTGAAGCAATG TATTTTATGCAAATATCTATGATGGATTGAAATCTTCTGTCCTAAGGTGCGTCTATTTCTTGTTCCACCAACAAAACTTT GATATATGTCAATTAGAAACCATCTTTTGAGTTTGTAATTGCATGTCTCTTTTAATTGAAATGACAAAATTTTATTGGTG GGACATGAAATTGAGACGTCATTTAGGGACATAAGATTATGAGTTATGACTTGTTGATAAGTGATGACCAAAAGCATATT CAATATGTCTCTCATTCTTAAAGAATATAACTCCACAATGTCTTTCTTGCAGGAATTAATATGGCCATCAGTTTCTCCTA TAGCTGGAAGTTTCAAATTCTATAAATTAAGAGAATTATGGTGGATTGACAGTTATAAGGATGAATATAACATGGATGCC TTATTCTGCTTCTTGAAACTATGCCCTGCCTTGGAGCAACTTTTTGTGACGGTAGGTTTATGTCATCAACGAACTATTTC AAAAATTTAAACTCTTAGGTGAAAACATATAGATGGTGTTAAAATTATACTTCTAACACATCCTCTCATGCAAGACGGTG TTAGGCTTGAAGCATAGACAATGCACAAGTCCACCTAGTGTTGTAATTCAACTTTTTATTAGAAGAGTACGGGCAAAAAT GATCAAATTCTAAAATCTAAACCACTTGGCCATAAATGTTCTGAAACATTTTCATGAATCAACTATCATAATGCTGAAGT TGTTACACATGAATGATTTTTATATTATACTTCTAAGAGTTTCCTTGTAGGGGAGTAATTGAAGCTCTTGTTCTGCTTTA GTCTTTAAGAATTCTGAAAATTCTTTTCTAACAAATTGATGTGCAGATTGATCCTGAAAGTTATTGGACTGAAAGCACTA ATTCATGTTTGATGCAAACAACCAAATGTGTAGAATTGAAGCATCTAAAACTGGTAAAGTTAATGGGATTTACATGCAGA AAAGATGAAATCTCATTGGCAAAATGTTTAAGTCATCTAATCAAGGGAAAGCCTCCAAAGATAAACACATCTGATGGGAA TTGCTGGGATGCAGAGTTTGTGCAGTGATTAGTTTTCTTATATCAGCCATAACAAACTAAGGACTTCCTCCAATATCTAG GGAAGGAAAACTATAAACATGTCTCAAGCACGTAGGCAAGGTATTACAACTAAATTTGTATGATGTTATAATTTATTTCT CTTTCCTTACAATAAATTTGAGGGGGAAACGTCTATTGATCTAATCTGGTCTGTTAGAATATAATATAAAATCATTAAAG TGACCCTTACCCAACAGCTTAAGCTTTTGGGATTAAGTGGTTATTTGACATGGTATCAGAGCCTCTATGACCGAGAGGTC TA
CDS sequence (LotjaGi1g1v0534200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATAACACTGCAAAGGATCTATTCAGCAATTTACCAAATGAAATTCTGAGGCACATTGTTTCATTTCTTCCAAA TGAATCTGCAATTGAAACCATCTTTCTCTCTACAAGGTGGAGGAACCTGTGGAGTGAAGCTCTTGTTAGACATGGAACTA AAGAAAACATCACTCAGGTGGTTGCTGGATTTCTACAGCGTTTTGAGGAGCTTGATCCATTGAAGCATCCAAGGAAGCTT CAATTTCACTTTGGTGAAGATAGAATAGTCATGGCAACAATTGCAAACAACAGTAAGCTTTTTTTGGATTTCTCCCCTTG GAAGAAAGAGCTTATTGAAATTCAATATGAATTGCAGTTCAAGCTCAGTAAAATGCAATCTTTTACCTCCAACATCTCAG TGAAAACTCTCTATTTGAAGTCAATAAGCTATTTGACAAGTGGGGTAGCTTCCACCATCATTTCAAATTTAGAGCATCTT GAGAATTTGGTCATTATTGAGTGTAGTGGGTTGCAATCTTTGAGCATTGACTCTGCATCAGAGCTGCAAAAGTTAACCAT CCGGGATTGCTTACAATTGAAGTCTCTTCACCTTAGAACTTCCAAACTCAAATCTTTTCAAATAAGTGGACCGCTTCCTT TGATTAGGCCTGAGTACCATTTCAACCTGAGTGATGCCATGCTTGATTTTAGACTGGGACCAAGCTGCAGAAATTTCAAG ACTAGGGATTTTGATGCAACTCTATTGACTATAAAGAACTCTCAAGTTCTCACACTTTGTAAATGGACTTTTGAGGAATT AATATGGCCATCAGTTTCTCCTATAGCTGGAAGTTTCAAATTCTATAAATTAAGAGAATTATGGTGGATTGACAGTTATA AGGATGAATATAACATGGATGCCTTATTCTGCTTCTTGAAACTATGCCCTGCCTTGGAGCAACTTTTTGTGACGATTGAT CCTGAAAGTTATTGGACTGAAAGCACTAATTCATGTTTGATGCAAACAACCAAATGTGTAGAATTGAAGCATCTAAAACT GGTAAAGTTAATGGGATTTACATGCAGAAAAGATGAAATCTCATTGGCAAAATGTTTAAGTCATCTAATCAAGGGAAAGC CTCCAAAGATAAACACATCTGATGGGAATTGCTGGGATGCAGAGTTTGTGCAGTGA
Protein sequence (LotjaGi1g1v0534200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDNTAKDLFSNLPNEILRHIVSFLPNESAIETIFLSTRWRNLWSEALVRHGTKENITQVVAGFLQRFEELDPLKHPRKL QFHFGEDRIVMATIANNSKLFLDFSPWKKELIEIQYELQFKLSKMQSFTSNISVKTLYLKSISYLTSGVASTIISNLEHL ENLVIIECSGLQSLSIDSASELQKLTIRDCLQLKSLHLRTSKLKSFQISGPLPLIRPEYHFNLSDAMLDFRLGPSCRNFK TRDFDATLLTIKNSQVLTLCKWTFEELIWPSVSPIAGSFKFYKLRELWWIDSYKDEYNMDALFCFLKLCPALEQLFVTID PESYWTESTNSCLMQTTKCVELKHLKLVKLMGFTCRKDEISLAKCLSHLIKGKPPKINTSDGNCWDAEFVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 391 | 385 | 1.1E-162 | – | |
| PANTHER | 7 | 391 | 385 | 1.1E-162 | – | |
| ProSiteProfiles | 7 | 43 | 37 | 9.047 | ||
| SUPERFAMILY | 7 | 64 | 58 | 1.96E-9 | ||
| Pfam | 9 | 45 | 37 | 6.4E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0534200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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