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LotjaGi1g1v0535100.1

Overview

Field Value
Gene ID LotjaGi1g1v0535100
Transcript ID LotjaGi1g1v0535100.1
Lotus japonicus genome version Gifu v1.2
Description Zinc finger family protein; TAIR: AT2G37430.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q9SLD4|ZAT11_ARATH Zinc finger protein ZAT11; TrEMBL-Plants: tr|I3SFV2|I3SFV2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0535100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:106342324..106343591) extracted from Lotus japonicus Gifu genome v1.2.

ATTAGTTGCAACTGTCACACTTGCTTGTTTTACAAGTCATTCAAAGTCACAATAATAGTATGTGGCAACATACATGCACA TCACAAAATGTCAACTATCATAAGTGTTCAACACTCTCAAGCTAAACCAGCTACAAGCTTTAACACCCTTTATAAATACC AAACGTTTCAGAGCCTCCTAGAGTTCCAATATTAATTCCACACTTCTTCATTTCTCTTTTCACACCTCCAAAAAACAGAA TACCCCCTGCATATTTCAATTTTGTTTTGGTGAGTTAGTTCAATTTACTGTGCCATGAAGAGAGAAAGAGAAATTGATAG CATGACCATGGCAAATTGCTTGATGCTGCTTTCTCAAGGAGGTGAATTTGAAACCACCACCACCTCCACCTACTCCCCTA GCCGTGTCTTTGAATGCAAAACATGCAACAGGCAATTTTCTTCTTTTCAAGCACTCGGTGGGCATAGGGCAAGTCACAAA AAACCAAGGTTGATGGCAGGAAATGGAGACATGGAATTGCTTCATGGTTCATCATCACCTCCAAAGCCTAAGACTCATGA ATGCTCAATTTGTGGGTTGGAGTTTGCAATAGGACAAGCCTTAGGAGGACACATGAGAAGGCACAGAGCTGAAAATTTGA GTGGAAACATGATGCAGAGTTCTACTACTATGAGTTGTAGTAGTGGTGGTAGCAGTCTTGATTCATCACCAAAGAATGTT ATGAAAGCTTACAAGAAGATAGTTTTGGCTTTGGATTTGAACTTGACACCTTTTGAGAATGATTTGGAGTTTTTGAAGAT TGGAAAGGCCACTGGTTTGGTTGATTATTTGCATTGAGTATTGTTGATTAAAATTGGAGAGATATAGCTAGTGTGGACCA TAGATAGATTAATTTTATTTGTTTGTCTTTTATATACACACTTTTTTGGAATCATACAGTATGAAATATCGTTCATTATA TAATTTCTTGAGCATAATTAGATCTTTATCTTATGTTTTTTTTTCTTCATCGGAAAATAATCTTTATCTTATGTTGAGTC AAAGAAAAAAAAAAACAAAACTTCGTGTAACATGAAAACCAAGCCATGTACGTCCCTTCAACTAAATTTGTTTTAAGGAT TCCTAGGCATTAACCAATACATAGAGGAAGAAGAAGTAATGGACCAAAGTTACAAAATTACGAAACCAGATGACAAAAAT ATGAAAAATAAAGTTTTTTTTTGAATCACTAAAATAGAGAAAATAAGTTTACGATAAATAAAGTACAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0535100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGAGAGAAAGAGAAATTGATAGCATGACCATGGCAAATTGCTTGATGCTGCTTTCTCAAGGAGGTGAATTTGAAAC CACCACCACCTCCACCTACTCCCCTAGCCGTGTCTTTGAATGCAAAACATGCAACAGGCAATTTTCTTCTTTTCAAGCAC TCGGTGGGCATAGGGCAAGTCACAAAAAACCAAGGTTGATGGCAGGAAATGGAGACATGGAATTGCTTCATGGTTCATCA TCACCTCCAAAGCCTAAGACTCATGAATGCTCAATTTGTGGGTTGGAGTTTGCAATAGGACAAGCCTTAGGAGGACACAT GAGAAGGCACAGAGCTGAAAATTTGAGTGGAAACATGATGCAGAGTTCTACTACTATGAGTTGTAGTAGTGGTGGTAGCA GTCTTGATTCATCACCAAAGAATGTTATGAAAGCTTACAAGAAGATAGTTTTGGCTTTGGATTTGAACTTGACACCTTTT GAGAATGATTTGGAGTTTTTGAAGATTGGAAAGGCCACTGGTTTGGTTGATTATTTGCATTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0535100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKREREIDSMTMANCLMLLSQGGEFETTTTSTYSPSRVFECKTCNRQFSSFQALGGHRASHKKPRLMAGNGDMELLHGSS SPPKPKTHECSICGLEFAIGQALGGHMRRHRAENLSGNMMQSSTTMSCSSGGSSLDSSPKNVMKAYKKIVLALDLNLTPF ENDLEFLKIGKATGLVDYLH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR26374
2 168 167 3.3E-61 –
PANTHER
PTHR26374:SF370
2 168 167 3.3E-61 –
Gene3D
G3DSA:3.30.160.60
27 125 99 9.3E-10 –
SUPERFAMILY
SSF57667
37 110 74 8.51E-9
IPR036236
Pfam
PF13912
38 63 26 1.6E-12 –
SMART
SM00355
39 61 23 0.2
IPR013087
ProSiteProfiles
PS50157
39 66 28 10.242
IPR013087
ProSitePatterns
PS00028
41 61 21 -
IPR013087
Pfam
PF13912
88 113 26 4.7E-10 –
SMART
SM00355
88 110 23 0.5
IPR013087
ProSiteProfiles
PS50157
88 115 28 9.951
IPR013087
ProSitePatterns
PS00028
90 110 21 -
IPR013087

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0535100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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