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LotjaGi1g1v0536500.1

Overview

Field Value
Gene ID LotjaGi1g1v0536500
Transcript ID LotjaGi1g1v0536500.1
Lotus japonicus genome version Gifu v1.2
Description ACT domain protein; TAIR: AT2G39570.1 ACT domain-containing protein; Swiss-Prot: sp|O80644|ACR9_ARATH ACT domain-containing protein ACR9; TrEMBL-Plants: tr|I1N552|I1N552_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0536500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:106518704..106523341) extracted from Lotus japonicus Gifu genome v1.2.

TCCAAGAATGACGTTTAATTGTAAAAGAAGAAATCAATACCTATGAAAAATATATCAAAAACCTATGTTATAGAGTTGAT AAGTACTGAAAATGAGATGACAAAAGCATGTTTTGTGACTTAAATCAATAAATTATCATGACCCCATAAAATTAATTAAT TATTAAATCATTTTTTCTCCTTTATCTACATGCAATTCACAGTTTCATAATTTTCTTACTTGACACTTCTCTTCCTCTCT CTCCAACCTCCCAACACCATTGGCCGGAGCCACCGCTGCGAGCTCCGGCAATGCTCTTTCCGGCGGCCATTCTCCCGTGA AGCTACACCACTTCTGAGTCATGGGAATACCCTTTGAAGACCTCGTTGTGATCCGGGAGGGGAAGAACCTCGATGAACCC TCCGTCGTCACGGTCAATTGCCCCGACAAAGCTGGCCTTGGCTGTGATCTTTGCAGAATCATCCTCGAGTTCGGTCTTCG CGTTACCAGAGCTGGTAACTCAATTTTCCCATCTGGGTTTCTTCGTTTTCCTTTATAAGTATCAAATCTCTACACAATTC AGATGTGTTCTCCTCTTCTTCATGTTTTCTGGCATGTTTTACTTGGAGGATTTGATTTTTGATGACCCTTTTAGCAGAAA GCAACCATTGTCCAAAAAAAAGTGTTCCTTCTTGAGTTGCTGTATAAAAAAATTCTTGGTGGTTGCATAATGGATAGTTT CAATTGATGTTTGGAGTTGCATTTCTTGTTGTTGTTTTGGTTTGTTTTCATGTGTGAATTGGATGGTGATCTAGATGTTT CATAAGAATCACCTACTTTTTCATCAGAATCAATTTTGATACCTATGAGCTCTCACAAAAGCTAAGCTTAGCTTTTCAGT TCTCCCCATGATTGATTTTAGCTTTAGAATCAATTGTAGGAATATTTTGAAATATGTTCTCAATCTAGGTTTCCCTTCTT CTGCTATTCTTTTGGCATAATTACTTTGGAAAAATGATTTTTGATTATCTTTGTTGGAAAATAGCAACAATTGTCCTAAA AAGTGTCCCTTTTTTAGTTCTTTTAAAAAAAATTCTTGGTGGGTGAAAAAGTGGTGCATAATAGATAGTTTCAATCTGCA GTTTATTTGTTGTTTGGAGTTGCATTTGTTACTGTTGTTTTTGTTTTGGTTTGTTTTCATGTGTGAATTGGATGGTGATG TAGATGTTTCAACGGATGGAAGATGGTGTTACATCGTGTATTGGGTTGTTCCACATCCTGCATCTCTCAAAGTTGATTGG GAAAGCTTGAAGACACGGTTACTTTCAGCGTGCCCTTCCTGTTTGTTTTCCTATTACTTCAATCAACAGTCTACCACTCC TTCACCGCCTCCAATTTACGTTTTGAAGGTTTGGTGTATTGATCAGAAAGGATTACTACATGGTAACTAGTTATATGAGC ACTTATTTGCCACTGTTCTGTTCTATCTTTTACCACTCATGGAATGGAATTTTCTTTTGACACTATTTTTCTCTCAACAT TATAGATATTAATGAAATCCTTTGCAACCTTCAACTTATTATTCAGAGAGTGAAAGCGATGCCAACCCCAGATGGAAGGG TCCTAGACTTGTTCTTTATCACAGATGGAATGTGAGTATAACTTTATTAGATTCTTTTTCATAAGATTTAGTTTCTGTCC TGCATCTGCTGGATGCTCTTTCTTATCACTTTTCAATCTATTTGGTATTTTCTTTGACATATGTCTCTGGAATCAGAATA ACAACGACAACAACAAATGTCTTATCCCACTAAGTGAGGTCGCTATATGAATCACCCAACACCACTGCGCTCGATAAAAA ACTAAATTGTGTGGGATATTCTTGACCATGAGGTCGCTTTTAACAATATATTCCAATGTCCTTCTGGGCCTCCCTTTACC TATCTTCACAGGATTGAAAACCATGCTATCAACCCTTCTCACTGGTGTCTCCAAATGCCTTCTTCGGACATGTACACCTT AACCAATTTTTGTCATCCTCTCCTTGATAGGTGCCACACCAATATCTCCTCTTATACGATCATTGTGTATCTTGTCCATC TTAACATTCTCATTTTTAATTTGGAATCAGAATTTGTGATAAAATTCCCACCGGGCTTTAGTTCCTCTATATCTTCTGGA TGTGCAAAAATATGTATGTCTGCTTAAAATCAACATGTTTTGATTGTTTGGATGACAGATTCTTTGTTCTTGTTGTCTCC CTATTTGTAATATTATCAGGTTTGTGAATAATCAAGGGATGTGTGAAATGAAACAGGGATTTTTGTTTTGATAATCCATG CCTATTATGCGGCATTTTGTAATAATTTTTTTCAATAATGAAACAGGGAATTGTTGCATACAAAAAAGAGGCAAGACTAC GTATGTGAATATCTGATGGATGCTTTAGGAGAGAGGTGTATCTCCAGTGAACTTCAGTTGGCCGGGCCTGAATATGGACA GATTCAGGGGTTTTCTTCTCTTCCACCAGCGTTTAGTGAAGAATTATTTGGTTCTGAGTTATTAGACAAGGTGTATATGC ATCCGCTCAGTAAAGATATGACAACATTGAAAAAACCAACTGTTATGGTGGACAATTCATTGAGCCCAGTTCATACCTTG CTTCAGATACAGTGTGTTGATCAGAAGGGCTTGTGTTATGACATTATGAGGATTTCTAAGGACTCTGATATTAAGGTATT TTTGAGTCATCATTTATGTATAGACATGATCTTTTGCTTCTCCCCTAGTGAAACCTGGTGTTAAAATATGAGATTACAGA TCTATTTGTTTGTAGTTTTTGAAAATTGTTTTTTGTATTTTAAAACTGATAAATTAAAAAACTTGTTTGTCATAACATGT TTTCAAAAACTAATTTTAAAAACATCGTAGAAATATTTTATTTTCTGCTTTTAGTTTTCAAGTTACAGTTTTTTAACGTT GTAAATATCTCATTCATTCATGGTTGGTTACTGTTTTCAGTTTTTAAAAACAGATATAGAAAATAGTCATTTGATATGAA CAATTTTAAAAAACATCTCAAAGATGGTTTCTGTTTCTGTTATTAATTTTCAAGTCATATCTCTTTCAGTTTTAAAAAAC ATATCGCTCAAACAATTTTTTTCTTTTCTTCTTTTAAGAAATAGGTTTTAAAAATTGTTTTTGAATAATGTTTTTAAATA AACTGAGAAGAGAATCAAACATACCTTTAACTTCTCAGCATGGACTTAATTATTTTCATTTGCCTTCTCTTCATTTTCCC ATTCAAATTGAATGCGTTTCAATCTCATTGCTTTGTTTTCTGTCTTTACTTTGTCTTAAGACTCTTGACAACCATTTTGT AATTATTTAGGAGAAGCAAATAACTTGTCTGAATTTTGATCAACATTTCAGTTTTTCTTTTCCCTTTCCTAGTTATTATC TGTTGATTATTTTACTTTTTAATCGTTCTTGCATGCATTTTCCATGTCCCATTTCTTAAAATTTTCATTGCATTTTGTTT AATTTATCGCCATTGCGCCTTTCTCAATCAGGTTGCTTATGCTCGGTTCTCTTCTAGTGTGAAAGGCTTTCAAAACATTG ACTTATTTGTCCAGCAAAATGATGGGAAAAAGATCATAGATCCTGAACTCCAGAAAACTTTGTGTTCTTGCTTGAAAGAA GAGATGCTCCATCCATTGCGGGTGATTATAGTGAATCGTGGTCCAGATACAGAGCTACTGGTTGCTAACCCTGTGGAGCT GTCTGGAAAGGGAAGGCCCCGTGTGTTCTATGATGTTACATTGGCCTTAAAAGCATTGGGAGTATTCGTTTTCTCGGTAA TTTTTGAAGTTAAAGCTTATTGTGAACATTTCTAGTGTGTTTGGACTTTGGATTGGCAGTAGACACATAATCCAAAATAC TGTAACTATAGAAGCTACACTATATAGCCTCTCGCTAGAAGAGATAATGAGTCTTACTACTGCAGAACCAAGCACACTAT TATTAGATTTAGATGTTCTATGGAGAAATCTTGTCACGTTTCTAAATAAAACCTCTTTCTGTCTCTCACTTATTTATCTT TATTGTGTAGGCTGAAGTTGTGAGGCATTCAACACAAGAACGCCAGTGGGAAGTGTACAGGTTTTTGTTGGATGAAAGCC ATGGATTTCCATTGACCAGCAGCAAAGCTAGAAGTCAGATTGTGGACAAAGTTAGAAGAACATTGATGGGGTGGTAAATG GTAATCTGGTTCAGCTCCTATCAGATACAAAGCACTGTTTTGAGTGTTTGTGTGGTGTGCCTTTTGATGCCTTCCACCAT CTCAACTTGACTTACCAGTTGAATTTGGTTTAGATAGTAGTTATCCTAAAGGACAATTATATAATTTTGGCATTGTAGAT TACCATGTTTCTTTTCTCTGGTTTTAGTGATAAAATTTCTCTATATTGGTTTTCTGGACAAGCGCTTAGGCTGCACTACC AACGATTTTTTTTTCTCTTTCCTTTATTTGCTTATGAAATACTGTGACAAGATGCACTTAAAAGTTCAAAGTAAAATATT CTTGGACAAAACTTAGATACATTCTCTTATATCCATTAAGCCCAGGTTGCCACTTGTATGTTTTCTTTTTGCTCACTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0536500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAATACCCTTTGAAGACCTCGTTGTGATCCGGGAGGGGAAGAACCTCGATGAACCCTCCGTCGTCACGGTCAATTG CCCCGACAAAGCTGGCCTTGGCTGTGATCTTTGCAGAATCATCCTCGAGTTCGGTCTTCGCGTTACCAGAGCTGATGTTT CAACGGATGGAAGATGGTGTTACATCGTGTATTGGGTTGTTCCACATCCTGCATCTCTCAAAGTTGATTGGGAAAGCTTG AAGACACGGTTACTTTCAGCGTGCCCTTCCTGTTTGTTTTCCTATTACTTCAATCAACAGTCTACCACTCCTTCACCGCC TCCAATTTACGTTTTGAAGGTTTGGTGTATTGATCAGAAAGGATTACTACATGATATTAATGAAATCCTTTGCAACCTTC AACTTATTATTCAGAGAGTGAAAGCGATGCCAACCCCAGATGGAAGGGTCCTAGACTTGTTCTTTATCACAGATGGAATG GAATTGTTGCATACAAAAAAGAGGCAAGACTACGTATGTGAATATCTGATGGATGCTTTAGGAGAGAGGTGTATCTCCAG TGAACTTCAGTTGGCCGGGCCTGAATATGGACAGATTCAGGGGTTTTCTTCTCTTCCACCAGCGTTTAGTGAAGAATTAT TTGGTTCTGAGTTATTAGACAAGGTGTATATGCATCCGCTCAGTAAAGATATGACAACATTGAAAAAACCAACTGTTATG GTGGACAATTCATTGAGCCCAGTTCATACCTTGCTTCAGATACAGTGTGTTGATCAGAAGGGCTTGTGTTATGACATTAT GAGGATTTCTAAGGACTCTGATATTAAGGTTGCTTATGCTCGGTTCTCTTCTAGTGTGAAAGGCTTTCAAAACATTGACT TATTTGTCCAGCAAAATGATGGGAAAAAGATCATAGATCCTGAACTCCAGAAAACTTTGTGTTCTTGCTTGAAAGAAGAG ATGCTCCATCCATTGCGGGTGATTATAGTGAATCGTGGTCCAGATACAGAGCTACTGGTTGCTAACCCTGTGGAGCTGTC TGGAAAGGGAAGGCCCCGTGTGTTCTATGATGTTACATTGGCCTTAAAAGCATTGGGAGTATTCGTTTTCTCGGCTGAAG TTGTGAGGCATTCAACACAAGAACGCCAGTGGGAAGTGTACAGGTTTTTGTTGGATGAAAGCCATGGATTTCCATTGACC AGCAGCAAAGCTAGAAGTCAGATTGTGGACAAAGTTAGAAGAACATTGATGGGGTGGTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0536500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGIPFEDLVVIREGKNLDEPSVVTVNCPDKAGLGCDLCRIILEFGLRVTRADVSTDGRWCYIVYWVVPHPASLKVDWESL KTRLLSACPSCLFSYYFNQQSTTPSPPPIYVLKVWCIDQKGLLHDINEILCNLQLIIQRVKAMPTPDGRVLDLFFITDGM ELLHTKKRQDYVCEYLMDALGERCISSELQLAGPEYGQIQGFSSLPPAFSEELFGSELLDKVYMHPLSKDMTTLKKPTVM VDNSLSPVHTLLQIQCVDQKGLCYDIMRISKDSDIKVAYARFSSSVKGFQNIDLFVQQNDGKKIIDPELQKTLCSCLKEE MLHPLRVIIVNRGPDTELLVANPVELSGKGRPRVFYDVTLALKALGVFVFSAEVVRHSTQERQWEVYRFLLDESHGFPLT SSKARSQIVDKVRRTLMGW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31096:SF43
3 419 417 2.4E-193 –
PANTHER
PTHR31096
3 419 417 2.4E-193
IPR040217
SUPERFAMILY
SSF55021
18 84 67 5.41E-8 –
CDD
cd04894
21 89 69 5.71579E-39 –
ProSiteProfiles
PS51671
22 107 86 6.929
IPR002912
SUPERFAMILY
SSF55021
108 164 57 5.41E-5 –
ProSiteProfiles
PS51671
111 194 84 8.811
IPR002912
ProSiteProfiles
PS51671
251 332 82 6.684
IPR002912

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0536500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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