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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0538800 |
| Transcript ID | LotjaGi1g1v0538800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat (PPR) superfamily protein; TAIR: AT3G04020.1 hypothetical protein; Swiss-Prot: sp|Q0WMN5|Y3913_ARATH Uncharacterized protein At3g49140; TrEMBL-Plants: tr|A0A151S7I2|A0A151S7I2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0538800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106728340..106732365) extracted from Lotus japonicus Gifu genome v1.2.
ATAGTTGAAGTTTGGTGTTTCGGCTGAAGGCTTTACAAGCTCGAAATCAGGTTGCAGGCCTAACACAACTAACAGTAGTT TCATCGAGCAGGTGGTGTGCACACTGCAACTCCATGAAACGCAACAAAGCAACGGTCTTGACATACGCCGAGAAATGCAA GGTTCTTGCTTCTTCTCTTTCTCTTCAAATTTCACAGCTTCCTTCACATTGACACCAGAGAGAGATGATTCATTTCCTGC TATTGTTTCAATTCTTATATACTTGTGTTTTCATGTATGTAGAATATATTGGCATCAAACTGGCAAGGTTCCCTTAACAC TATCAAAGCAGATGCAAAAGGAAGGTACCCTTTTGCCCTTTTCCTTTGCTTCTTCTTCCTCTTCTCTATTCACAATTCAC AGACCTTACTTTCTGCACAACTAAGCATGCTGTTTAATTTTTTTTTAATGTTGTGATAATTAAGGACAAGTGATGTAATT TCTGTTACAATATTAGTACTTTGTTAATGGGTCTTTGTTATTTTTGCATGATTCTACAGCAAAGAGAGTATCCATACTTC AAAGGTTAAGTACATAGTGAAAAGGGGGCAGCCATATCTTTGGGTGCCAGAAGATGATTTGCATAATGTGGTATGTTGCT CTCTTCTTTTCGGATTGCTTCTTTCCCTTTTACAGTGTGAAGATGAGATTACTAAAGAAAAGTCTTAGACTTTTGTTGTA GAAAGTATCTTATGTATATAACTGCTTAGTTCATCATAAAAGTATCAGAGACAGCTACACTCTAAGAGTCAGTTTGAGTC CACTTAAAAATAGGGCGAGAATTCAGGGAAAGTTTGAAGTTTGGCAATGCTTCATTTTCTCTTTCGTTTAATGTATTTAA GGATAACTAGTTGCTTTGATTGTGATTTGTGATTACTCTGGCTTCCTATGCCTGTTATTTCAATTAATGTTTGTGATCCA AATTTCATCTGATCAACTGGACCTATCAAGTTCATCATATTGTATAACTTATTAACAGAAGGAATGTTTCGTAGGTTTTT TAGTTTTTGATTTCGGTTTTAGTTTTTCCTATTTTAATGTTTATTTTTACTTATAATAATGAGACTTGATTCGTTAACAA ATCATCTGAGTATTTTTCATAGCTACAAGATGACACATTTTATTTTTGTTTTATGCAGAACACAATCATTGATGAGCGCG GTTCATTTGCTGTGACCAGTCCCTTTCCTGGTCCTCTAGGGGTCTTATTGAAATCATTGGATAAGGTTGTGCACGTTATA CATACGTGATACGTTTTCTATTGAGACTAAGATAATATCTTATGCAAATATTTTCACCCTTGCTTGATTCTCATTGCAAA GAACTAATCAAGGGCTTTGATACAAATGGTGCCGGCTTTCATATTCTTGTATAATCAGAAGAAATGAACGTATAAGCTTA TTAGTTGATTTATTCACATGCTGCAGTTACCAGCACGGATTGCTTTATCTGGGGATATTCGTCCGCTTAACGAAGATAAG GTGATACCACATAAACTTTCCACATGCTTGCTCTTTATGGTTTCACATTCGTTAATATAGTTTACTGAACCTCTGACAGT CCTGACTCCTAACTGAAAGTCTGTGTTTTTAGCTTTGTACCTTTTCAATGCCTTTAGCATGGCCAAAGCCTGATCAGAGC AAATATATCTTTCATGATAAGATTGTTATTCTGTTACATAGTAAAATACTAACTTGTCACCTTCAATATTGTAATGGACA GAGAATCATATTTTATACCAAGATCGTGATTGTTAATTAATATCTAACTTATAAAAGAAGTAATCAACATTTGGAAGAGG GGCTGCTTAACTCCATATTTTGACGACATTATCTTCTAACTGCATCTCTATATTGAACTTTAGTTTTTCTGAAAATTGAC TTATCATATACTATTGGCAAGTGATGGCGGGTTTTGATATATTGTTATAGATATTGACATGAAGTCATTGATCTTGGTAT AGGCTAAGTCTCTTGCAGAAAAACTTCAGGAAGTCATACTATCTGAGCAAAAAGCGATCAAAGAGTTCACCTACACTGTT TCTGAAGTATTGAGTTCTAGTGTTAGGAAATCATTGCGAAGTGATAATCTTCAGGAACTTCTACGAGACGATGAAAAATA CTCCGTATATAGATTTAAAATCAGGTAGGAACTCATATGTTTCAATCTATATCTTGAATTTTGTTATTTCACTTTCTACC AATCCTGAGCAGTTGATTGCAGGTTTTGTACAAGTTCTCGAAATGAGCATACTGACTTATTTATTTCCTTCTATGAAACA TTTAGTCTTACAACTTTTTACAAGTCGCTAAGTTTGTGGCAAACTTTGTTATGACACTCAAGCAGTGTTTACTGCTCACT ATGCTAAGAGATTAAAATTTTGGTTGCGTCAGATGATTGCCCATGATCTTGTTATGTTTCCATCTGTTAGTAGGTCTTTT ACAGAGCCTATTTATTTAGAAAGTTTCTTCCTGAAAAAATTAGCTTGAGAAAACTTTTAACATCATGCATCCAGTAAAGT ATTACAAAAGAAATTAGAAAATGTAAAATTTTAGTTCCATCTAATGTAAGTGTTTGATGCTCAGATCTTGCACATTTCTT GATGGGCGTGGAGGCAATTTTGAAGTGGATGTCGAAAATCTAGAAACAACCAAAGCTGATAAACTAGGTAAAGACCTGGT TTGAAATGCTTAAATCCGATATACCGTACTTTATAAACAAAAGATTCACATCTCTTGTATGTTTCTTGTCTAGCTCCTTT TTCTGCCAAGTTGATTGATGGGATTAACCAAAGTGAGGCTAGGCGTAGAGCCCTCGTGCTTCTTTGTTTTGTTGACATGA ATGCCCATGCAAAGGTAACTTATCGATCTTGATTATTCCTTATACCCCAATTGTGCAGTTGCTTATTCGCTATTTTCATG ATTAGGAGTGTGTTTACAAGATACATTTGTAGTTTTTACATTGTGGATAATCGCTCGGGATTTTAGACGCATAGATGACA CATCACCCATCATATCTCTAATTTCCCTCACTTCTATTTTTCTTTGGGATGTCAGTAGATTTGGGGTTTAAAAAAAAAAA TTTCATCACAGGTTATTTTTTAAGTAGATTTTAAGAAATATTTTATTGCATATGCCCTCAAACATCAGGGTAATATATCC CTCTCAACAATTATGGTATAACTTCTATAGTTTCTTTTGATTTGTTGGTTTTGTACCTTTGTTCCTTTGAGATGAACACA ATTTTTTTTGTGTGTATCAAACATGTCTTATACAAAATTGAATTGAAACCATGAAATAGATCACTTCCATCTGATGACGA AGTTACATTTAGAGCCAATATTCTACCATGAGTTATTTACTTTTTCATTTATTGCTCTCATAATATAATGTTATGAACAA TTAACAAGGTCACTGGTGTTGTACTTAGGATGCATATGTAACATCTATTGATCGGAAGGGATTTGATGTCCTGGCAAAAG TTATGAGTCCAGTTTTGAAGGATGGTGTTGGTCACTACCAATGGAAAGAGTTCAGGTTCATGTTCAAGGAAGAGGCAAAA GACGTTGAAATGTTCTGCAGTCAACTAGTCGAAATGGAAGAGGAGGTCATCTATAAGATTTCAACATCCAGTGGACTGAA ACTAAAATGAGAGTGACCTTGGTCGCATTCTTGTTTTCTTTTATATAACTTCTTTGTCAGCTAAAATGACAGACATCTTG ATTAGTTTTTTGACCTTGTACATTTTATATTATTATTTTTATCAATTAGAACTGTACTAGGCAGTTACTTAAGGGTATAA TGCAGGATGGTTTCATGGCATTATCTTCTTAATTGTGTTGCGCGAAAAAGTTACTTATTTGGCTCGTAATGGTTCAGATT TTTTACTACATAGCAGTCTTGATGAAGTAAATTTTCAATTTTGTTTCAATACATCATGGAAAGGTAAACTTGGTTTAGTG TTGTAGGACCAAAGATGACACTTTTC
CDS sequence (LotjaGi1g1v0538800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACGCAACAAAGCAACGGTCTTGACATACGCCGAGAAATGCAAGAATATATTGGCATCAAACTGGCAAGGTTCCCT TAACACTATCAAAGCAGATGCAAAAGGAAGCAAAGAGAGTATCCATACTTCAAAGGTTAAGTACATAGTGAAAAGGGGGC AGCCATATCTTTGGGTGCCAGAAGATGATTTGCATAATGTGAACACAATCATTGATGAGCGCGGTTCATTTGCTGTGACC AGTCCCTTTCCTGGTCCTCTAGGGGTCTTATTGAAATCATTGGATAAGTTACCAGCACGGATTGCTTTATCTGGGGATAT TCGTCCGCTTAACGAAGATAAGGCTAAGTCTCTTGCAGAAAAACTTCAGGAAGTCATACTATCTGAGCAAAAAGCGATCA AAGAGTTCACCTACACTGTTTCTGAAGTATTGAGTTCTAGTGTTAGGAAATCATTGCGAAGTGATAATCTTCAGGAACTT CTACGAGACGATGAAAAATACTCCGTATATAGATTTAAAATCAGATCTTGCACATTTCTTGATGGGCGTGGAGGCAATTT TGAAGTGGATGTCGAAAATCTAGAAACAACCAAAGCTGATAAACTAGCTCCTTTTTCTGCCAAGTTGATTGATGGGATTA ACCAAAGTGAGGCTAGGCGTAGAGCCCTCGTGCTTCTTTGTTTTGTTGACATGAATGCCCATGCAAAGGATGCATATGTA ACATCTATTGATCGGAAGGGATTTGATGTCCTGGCAAAAGTTATGAGTCCAGTTTTGAAGGATGGTGTTGGTCACTACCA ATGGAAAGAGTTCAGGTTCATGTTCAAGGAAGAGGCAAAAGACGTTGAAATGTTCTGCAGTCAACTAGTCGAAATGGAAG AGGAGGTCATCTATAAGATTTCAACATCCAGTGGACTGAAACTAAAATGA
Protein sequence (LotjaGi1g1v0538800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRNKATVLTYAEKCKNILASNWQGSLNTIKADAKGSKESIHTSKVKYIVKRGQPYLWVPEDDLHNVNTIIDERGSFAVT SPFPGPLGVLLKSLDKLPARIALSGDIRPLNEDKAKSLAEKLQEVILSEQKAIKEFTYTVSEVLSSSVRKSLRSDNLQEL LRDDEKYSVYRFKIRSCTFLDGRGGNFEVDVENLETTKADKLAPFSAKLIDGINQSEARRRALVLLCFVDMNAHAKDAYV TSIDRKGFDVLAKVMSPVLKDGVGHYQWKEFRFMFKEEAKDVEMFCSQLVEMEEEVIYKISTSSGLKLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 306 | 305 | 1.8E-146 | – | |
| Gene3D | 7 | 195 | 189 | 5.9E-12 | ||
| SUPERFAMILY | 12 | 296 | 285 | 2.35E-21 | – | |
| Gene3D | 198 | 304 | 107 | 6.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Cofactor binding | Interacting selectively and non-covalently with a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. |
Expression pattern of LotjaGi1g1v0538800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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