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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0542500 |
| Transcript ID | LotjaGi1g1v0542500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I1KZ45|I1KZ45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0542500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107143118..107150017) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTTTTTTAAATCTCAGTGACATTTTCATTTTTTTTCCAAGACGCAAGGACACTGGTCTCGCATCGAGGGTTTTTGC GGTAAAGGAATCGATCGATATTGACATTGTTCGTTTGAAGAAGAAGAAGAGTCTTCGATTTCAACTCGTTTTCTGGAATG AATGAAAAGCAGACAGTAAGATCCCCTTTCCCATACATAGCTTTCTGCATATTGGTATAAATTGTATATTGCATTTCTCG ATTAGTATTTAGTATCAGTTCCTATATGTGACTGCATATTGCACATTCAAGTGTTAATTGATGATCTGGTACTACAACTT GTCACACTGGGTATAATAAATAAGAGTCTTTACAAATTCTTCTCATCAAAGTTTGTATTAGCAAAGTTATAAAGCCTTCC CGGTGCACACTTGAGAGGGTCAACCAGCTCATGAATCCTGGTGGAAAAATCTGGAATGTGGGCAGAATTAGAAGGGTATT CTCGGGTTTCGATGCATCAAAAATACTGCAGATTCCGCTTACGGCGAGGCCAACTAATTTGGAGAGATAACCGGAATGGC CTGGATAGTGTGAAATCAGGATATAGAATTCTCAGAAATATGCACTCAAACCAACAATCTCCAGGTCCTTTGAATTCAAA TGCCTCGAAGTTGTGGAAAAAATATGGAGTATAAATGTGCTTCCAAGATGTAAGGAGATGGTCTGGAGAGCTTGCAACGA GGTGCTTCCCCGCCGTGAACGTAAACCTTAAGAGAAGAGGAACCAATACTGAGACAATCGGCCCCTGCTGCGGGGAGGAG GATGAAACCACGGTATATGCTCTTCTACAATGTCGGGGAATCCGAAGAACCTGGTTTGCATCAAATGCTCTTCTACACAT TGGCCTCCATCTTTAATCTTATATGGGCCATATGGTGCAAAAGAAATGCATGGAACTTTGAAGGACAACAATGGTGCATA GAGAAGACCCTGGCGAAAGCAAAAAGCATGGGAGCAAGAGGCGAACTGAATTCTGAGTCTTTGACCCGAAGCTTCCTCCT CCCATTTGGACTCCTCCACCGGATGGATGCTTTAAGCTCAATATTGATGCTGCAATTAAATGCAATGAAGGAACAGGCTT GGGCGCAATAATCAGAAACAGTAGAGGCTTAACAATGGCAGCGGAAACTTGGAAGATTGAAGAAATCGAAGATCCTACTC TAGCTGAAGCTGCTGGAATCAGATGGGCACTTAAATGGGCAAAAGAAATCTGCTTTGATCAAATTCTTGTGGAAACAGAT TGCCTTTTGTTCTGTCAGCAATGGGAAAACAGAATTCCTGGAATTTCTTACCTTGATGATGTAGTTAGAAAGTGTAGAAT CCTCTCTTCATGTTTTAGTGTTTGTAGTCTCCCATGTGATCCTGCAACATAGCTGCTGATTTCTTAGCACATTTAGCTTT TACTTATCTTGATGCTTGTTGGCTAGAAGAAGATCCCCCAGGGGCTTCTGTTTTGTTATCAAATGATGTAACGCTTGCAG CTTCTGCTGCTTTTGAATGATAGACAGTATTAAAACCTCAAAAAAAAGTTATGTAAAATATCATTTGGAACCTTTGCAAC TTCAACAAATAGTTGATGAACCAAAGGGGATTCACAATTTTACTTCTACATTTTTTCACTCTGAGCTTGATAGGTAGCCT GCACAACACATCTTAAGGATTTAAATTTTAATAATTGGAGAATAGATCTTGATGGATCTTTCACTGCCAAAAGTAACTTC ATCAGGACATGACCTTTTCCCATTGCAGGTTTTTGCTGGTTGTCTTTGTTGGGCTTCGGTTGATGGTTAAGGGTTTATGA AAAACTATTGGGTCAGTGGCATTTAATATCAATGGCTGTTGACAGGATTAGCATGCTGCCAGATGAAGTCCTTCATCACA TTCTCTCTTTTCTCCCAACTCAAATGGCTGCAGCCACAAATATTCTTTCAAAGAGGTGGGTTCCACTGTGGCGCTCAGTT CCTGCTCTCTTCTTTGACGACCAAAGCTACCTGCTAAACAACAAACCCAAGGCCGAACCTTATCATCATAATCAGTACTT GTCTGCATATCAAGAACAAAATTTTGAAGCATAGGGCACTGCTTGAGCATTGGAGGTACCAAATGCCAGTCCATATCATT TATATATTCCCAAGTAAGCTCCACATGGGATAAATTGGGAAAAATTGGAATATCATCCGGGTCCTGCAAGAGTCACAAGG AGTAATCACAAACATTAGTGACATTTTTAAGAAATTAAAACAAGTTAAACACACTTGTTTAACATTTATATAAACCTTGT CTATGCCAAGAGAACCAACAAAAATATCAAAATCAATGTCATGTATATCTTGCCTGATCAACTTAGATAAGCTTCCAAAC TTCTTATCACTAGGAATATAATAGTCAACCATATAATAGGTTATACCCCTCAGATGCATATACTCAAGAATTGGACACCC AACAAGAAGATCCACAAAACAATGCGGTTCTAGAAACATAACATTGTTCAAATGCAGAGTTTTTAGTGAAGGAAGGTCGA TAGAAGAAAACTCATCCACTGTTAACCCCACCAACAAGAAGATCCACAAAACAATGCGGTTCTAGAAACATAACATTGTT CAAATGCAGAGTTTTTAGTGAAGGAAGGTTGATAGAAGAAAACTCATCCACTGTTAACCCCACCAACTTCAGAACAACCA GAGTTTTGCAGTAGAAAATGCAGCTGCTCAAGATCAGTGGAGAATTTTGAGGGGGCAGCTGGATGTAGAGGTTCTCAAGT CCACGCTGTATTGCAGTATCGACCCATAACTTGAGATCAGAATCAGAAAAGTCGAAATTGGAAGCCCCACATTGGAGACG AAATGTTCTTATGGGGACATTTCTGGCGAGAATGGTTGCATAAATGAACTTTGTAAAGCAATGATTGGGTAAGCTTGGGT TTCCCCCAGTTCTATTCCTGAATGTCTTTCTTCACAGCTTAGGAAATGTTCTATTACAAATTACGAAGGCACGGAAAGTG AGCTGCATTTTGCAAAGTATATCATGCAGAATTCAAGAGTTTTACAGACGATGACAATATGCACTCGACGTTCCTCAGAA ATAAAGGTCGACAAGCTTGAACTACTGAAAGAATTGTCCTTATGCCCAAGGAGTTCTACTATTTGTGAACTTTCATTTAA ATGAAAATGAATGAAAGGATCTAGATAGTAGCAGCAAGCTGTGTTTAGATGATTGCTTTTGTACTTAGTTTATCTACATA TAGTACAACTGCTTGTGTTTTGTAGGACATGGAACTTGTCTCATGTTCAATGATAGTGCTTAGATGTCATATATTTTCAA CGAAGCGAAGATGTGTACTTTTAATTAAATGACTTGCTCCTTTGAAGCTATGTATCTATTGTGGACAATTTTTTGGAGTT GAGTTATACCTATATGCTCCCATTTTTTCGTTTTTGATCTGCTAAATATTGATATACATGATACAATAACAGAAATATGA ATGTGCTCTTCAATTCGCATCATCGTCCTGGTGGAGAGTGGACCCAGAAGAGAATAACTTGAGGAATTTTTATTTTTATA TATACGAAGCATGCACATATCTAGAACTAAACATTTGTCTGAGAACTTTACTTGGTTGGAGCTTCTTCTAAAGGATGGTT CATGTGAACACAATCCTTCTAGTTGTTAAGAAACAACATATCAGCTTTTGGAACCTCTTTTACTCTGTTTTGAATCTATG GTACTCATTCTTCTGCTCCTACCCTTCTTCCCTCCAAGTTTGTCCAAAATTATTATGTAGCTTACCATTTTTCTAGCAAT CATGTAGTTCTGAGGTGCTAGGTGATGATCGACTTCTTGATAGAAAGGTTCATTAATCATCTAGAAGGGTGTGATTACGT GGATCTCTATTGTTGGTAAGCAATCCGATTCTTTCTATGAATAGGATCTGACATTTAGCTACGTGTCTCTGTATTTCTTA TTTTATTATTGTATTTTCTTACCTCATTTTGTTAATGTCTTCTTTATGTTGTCTTTAGCTTCTTAGAATTTGAGAACTTG AAGAAGGTAGAACTAGAAGGAGAAGATTAAAGAAAAGTTGCGAGCCATTAAGCCATGTGCTACTATTCTGAGGATTGTAA ATGCAAATGCAGCCCTCTTAGTTTTCTCTTTGGCCTGCCTTTTGCCTTCTTGATCTTGACTCTCTTGTCTTCATCTCCCT TGTTATTTTGGAAGAAACACAATCAACATAAAGGCTTTAATGGTGACATTTAATTTGATATCAATTATTTCTTGCAGGTA TCAATAAAATTTAAGGAGCTATTACTGCAGGTATCAATGTTATTCCTATATTTTTTGCACTCACTATCACCGGTCTCGGG TCAAGGGTTAGTGTTCGCGGATAAACCCATCCATCAGCGAAGCTATAAATTTGTGTGTTGTACTGCCTACTGTGATGAAG AGTCTTCGATGGACATACTTCAACTCGTTTTCTGCATTCACTCACACCCCATATGATGTATGGGATCAAATTTCTGACGG TAAGAGCCCATTTCTCATACACAACTTTCTGCTTTTGGGTTTTGAAATGGGAAAAAACACTAATCTAGAAAGTGACTCCA TATTTTCTTTTGTAGATTGCATTACTCGATTATCAATTCCTATATGTGCATATTGCAGATTGAAATTGTTAATTGTGCTT GTTGTCAAGTGACGTGAAGATCTGGGTATACCCACAAATGGCTTACATGTATAACTTTTAAACCTAGAACTCCTTTTTAG TACAAATAGGAGTCTTTTACAAATTCTTCATAAAGTTTGTATTAACAAAGTTATCTCTACACCATTTGTAACTTCAACAA AGGGGGTTGTCAATTTTACTTCTACACTTTTTCACTCTGAGCCTGATAGATAGCCTGCTCAACACATCTTACAGATTTAG ATTCTGATAAATGAAGAACCCCCGGCCATAAACCAGAAGTCAAAACCATCCACACTAACTATTTCTCTAAACGGTTCTTC ACATTTTGACTTTGGTTGACGCACTAAATCTTTTCATGTGGAATTGAAACCTGAAATCACAAATAGATTGAAGTTACACA TTAGCAAAACCAGAAGAAAGATTAAAGAGATAGAGAGAATTTGCAATTAAAGAAGTAAGAAAATCACCTTATAGTGAGTC TGATCACTTCTCCTTTTGGATAAGAGATCTTGATGATCTCTCACAAAAAAATGCAACTTTATCAGGACATGACCTTTTCC CAGCGCAGGATCTCACACTTATCCTTTTCATTATTAATTTTTAATTGAAAGTTATTATCTCACTAAAGAATGGACTTTTC CCTATGCAGGTTTTTTGCGGATTGTCTTCCTTAGGCTTCCCTTGATGATTAAGGGTTTGTGAAAAGCTATTGGATATCAA TGGCCAATGACAGGATTAGCACGTTACCAGATGAAGCCCTTTATCACATTCTCTCTTTTCTTCCAACTCAAATGGCTGCA GCCACAAGTATTCTTTCAAAGAGGTGGACGCCACTGTGGCTCTCAGTTCCTTCTCTCTTCTTTGACGACCAAAGCTACCT CCGTAACCACAAACCCTATCTATATTTCACAAAATTCATATATGCAACCATTCTCGACAGAGATGTGCCCATTAGAATGT TTCGTTTGCAATGTGAGGCTTCTAGTTCCGATCTTTCTGGTTCCGATCTCAAAATATGGATCAAAGCTGCAATACAACGT GGACTTGAGAACCTCTACATCCTGCTGCCCCCTATACCTAATGTTTTTCGACCGAACTTGAGCAGCTGCATTTTCTGCTG CAAAACTCTTGTTGTTCTCAAGTTGGTAGGGTTAAATGTGGATGAATTTTCTTCTGTTGACCTTCCTTCACTCAAAACTC TGCATTTTCACAATGTTGTGTTTCAAGAACCGCATTATTTTTTGGATCTTCTTGCTGGGTGTCCAATTCTTGAGTATATG CATCTGACGCATGTATACTATATCTATGCCGATGCTGTTGATTATATTCCTAGTGACAGGAACTTTGGAAGCTTATCTAA GTTGGTCAGGGCAGAAATACATAGCATTGATTTTGATACTTTTGTAGAATCTCTTGGCATTGACAAGGTTTGTATAAATG CTACGAAGTGTGTTTCAATTTTTTAAAAATGTCACTAATGTTTGTGATTACTCCTTTTGACTCTTGCAGTACCTGGAAGA CATTCCAATTTTTCCCAGTTTAACTCATCTGGAGCTTATGTGGTGGGGATGTAAAATGAATTGGCCTTTGGTGCTTTCAA TGCTCAAGCAGTGCCCTATGCTTCAAAACTTTGTCCTTAATATGGAGACAAGTACTGATTTTGATGATGTGGTTTGGATT TCACCCCCAGTTGTCCCTGAATGCCTTTCTTCACAGCTTAGGAAATGTTCCATGACAAATTATGAAGGCACGAAAAGTGA GCTCAATTTTGCAGAATATGTTATGCAGAATTCAAGAGCTTTACAGACGATGACAATAAGCACCCGGTGTTCCTCAGAAT TAATGGTCGACAAGCTTGAACTGTTTGAAAAATTGTCCTCATGCCCAAGGAGTTCCAGGATTTGTGAACTTTCATTTACA TGACAATGAAGGACAGGCTCTACTTGGTAGATGGAAATTGTGTTTTAGATTATTGCATTTGAATTTGGTTTACCTACAGA TAGTACAACTGCTAGTCTTTTGAAGGACATGGTATCTGTCTCTTGTTCAATAATAGTCCTTAAATGTCATAATTTTTCAA CGAAGTGAAGATTTGTGTTTTTAATAAAATGACTAGCTCCTTTTAAGCTATACAAGTATTTTTTTGGACTTGAGTTACAC CTATATGCTCCCATTTTAAG
CDS sequence (LotjaGi1g1v0542500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAATGACAGGATTAGCACGTTACCAGATGAAGCCCTTTATCACATTCTCTCTTTTCTTCCAACTCAAATGGCTGC AGCCACAAGTATTCTTTCAAAGAGGTGGACGCCACTGTGGCTCTCAGTTCCTTCTCTCTTCTTTGACGACCAAAGCTACC TCCGTAACCACAAACCCTATCTATATTTCACAAAATTCATATATGCAACCATTCTCGACAGAGATGTGCCCATTAGAATG TTTCGTTTGCAATGTGAGGCTTCTAGTTCCGATCTTTCTGGTTCCGATCTCAAAATATGGATCAAAGCTGCAATACAACG TGGACTTGAGAACCTCTACATCCTGCTGCCCCCTATACCTAATGTTTTTCGACCGAACTTGAGCAGCTGCATTTTCTGCT GCAAAACTCTTGTTGTTCTCAAGTTGGTAGGGTTAAATGTGGATGAATTTTCTTCTGTTGACCTTCCTTCACTCAAAACT CTGCATTTTCACAATGTTGTGTTTCAAGAACCGCATTATTTTTTGGATCTTCTTGCTGGGTGTCCAATTCTTGAGTATAT GCATCTGACGCATGTATACTATATCTATGCCGATGCTGTTGATTATATTCCTAGTGACAGGAACTTTGGAAGCTTATCTA AGTTGGTCAGGGCAGAAATACATAGCATTGATTTTGATACTTTTGTAGAATCTCTTGGCATTGACAAGTACCTGGAAGAC ATTCCAATTTTTCCCAGTTTAACTCATCTGGAGCTTATGTGGTGGGGATGTAAAATGAATTGGCCTTTGGTGCTTTCAAT GCTCAAGCAGTGCCCTATGCTTCAAAACTTTGTCCTTAATATGGAGACAAGTACTGATTTTGATGATGTGGTTTGGATTT CACCCCCAGTTGTCCCTGAATGCCTTTCTTCACAGCTTAGGAAATGTTCCATGACAAATTATGAAGGCACGAAAAGTGAG CTCAATTTTGCAGAATATGTTATGCAGAATTCAAGAGCTTTACAGACGATGACAATAAGCACCCGGTGTTCCTCAGAATT AATGGTCGACAAGCTTGAACTGTTTGAAAAATTGTCCTCATGCCCAAGGAGTTCCAGGATTTGTGAACTTTCATTTACAT GA
Protein sequence (LotjaGi1g1v0542500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANDRISTLPDEALYHILSFLPTQMAAATSILSKRWTPLWLSVPSLFFDDQSYLRNHKPYLYFTKFIYATILDRDVPIRM FRLQCEASSSDLSGSDLKIWIKAAIQRGLENLYILLPPIPNVFRPNLSSCIFCCKTLVVLKLVGLNVDEFSSVDLPSLKT LHFHNVVFQEPHYFLDLLAGCPILEYMHLTHVYYIYADAVDYIPSDRNFGSLSKLVRAEIHSIDFDTFVESLGIDKYLED IPIFPSLTHLELMWWGCKMNWPLVLSMLKQCPMLQNFVLNMETSTDFDDVVWISPPVVPECLSSQLRKCSMTNYEGTKSE LNFAEYVMQNSRALQTMTISTRCSSELMVDKLELFEKLSSCPRSSRICELSFT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 232 | 231 | 1.4E-19 | ||
| PANTHER | 3 | 370 | 368 | 3.5E-84 | – | |
| PANTHER | 3 | 370 | 368 | 3.5E-84 | – | |
| ProSiteProfiles | 3 | 51 | 49 | 8.994 | ||
| SUPERFAMILY | 3 | 48 | 46 | 8.37E-11 | ||
| SUPERFAMILY | 118 | 281 | 164 | 5.76E-10 | – | |
| Pfam | 298 | 339 | 42 | 2.4E-14 | ||
| SMART | 300 | 373 | 74 | 7.6E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0542500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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