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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0542500 |
Transcript ID | LotjaGi1g1v0542500.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I1KZ45|I1KZ45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0542500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107143141..107146505) extracted from Lotus japonicus Gifu genome v1.2.
AAATATGAATGTGCTCTTCAATTCGCATCATCGTCCTGGTGGAGAGTGGACCCAGAAGAGAATAACTTGAGGAATTTTTA TTTTTATATATACGAAGCATGCACATATCTAGAACTAAACATTTGTCTGAGAACTTTACTTGGTTGGAGCTTCTTCTAAA GGATGGTTCATGTGAACACAATCCTTCTAGTTGTTAAGAAACAACATATCAGCTTTTGGAACCTCTTTTACTCTGTTTTG AATCTATGGTACTCATTCTTCTGCTCCTACCCTTCTTCCCTCCAAGTTTGTCCAAAATTATTATGTAGCTTACCATTTTT CTAGCAATCATGTAGTTCTGAGGTGCTAGGTGATGATCGACTTCTTGATAGAAAGGTTCATTAATCATCTAGAAGGGTGT GATTACGTGGATCTCTATTGTTGGTAAGCAATCCGATTCTTTCTATGAATAGGATCTGACATTTAGCTACGTGTCTCTGT ATTTCTTATTTTATTATTGTATTTTCTTACCTCATTTTGTTAATGTCTTCTTTATGTTGTCTTTAGCTTCTTAGAATTTG AGAACTTGAAGAAGGTAGAACTAGAAGGAGAAGATTAAAGAAAAGTTGCGAGCCATTAAGCCATGTGCTACTATTCTGAG GATTGTAAATGCAAATGCAGCCCTCTTAGTTTTCTCTTTGGCCTGCCTTTTGCCTTCTTGATCTTGACTCTCTTGTCTTC ATCTCCCTTGTTATTTTGGAAGAAACACAATCAACATAAAGGCTTTAATGGTGACATTTAATTTGATATCAATTATTTCT TGCAGGTATCAATAAAATTTAAGGAGCTATTACTGCAGGTATCAATGTTATTCCTATATTTTTTGCACTCACTATCACCG GTCTCGGGTCAAGGGTTAGTGTTCGCGGATAAACCCATCCATCAGCGAAGCTATAAATTTGTGTGTTGTACTGCCTACTG TGATGAAGAGTCTTCGATGGACATACTTCAACTCGTTTTCTGCATTCACTCACACCCCATATGATGTATGGGATCAAATT TCTGACGGTAAGAGCCCATTTCTCATACACAACTTTCTGCTTTTGGGTTTTGAAATGGGAAAAAACACTAATCTAGAAAG TGACTCCATATTTTCTTTTGTAGATTGCATTACTCGATTATCAATTCCTATATGTGCATATTGCAGATTGAAATTGTTAA TTGTGCTTGTTGTCAAGTGACGTGAAGATCTGGGTATACCCACAAATGGCTTACATGTATAACTTTTAAACCTAGAACTC CTTTTTAGTACAAATAGGAGTCTTTTACAAATTCTTCATAAAGTTTGTATTAACAAAGTTATCTCTACACCATTTGTAAC TTCAACAAAGGGGGTTGTCAATTTTACTTCTACACTTTTTCACTCTGAGCCTGATAGATAGCCTGCTCAACACATCTTAC AGATTTAGATTCTGATAAATGAAGAACCCCCGGCCATAAACCAGAAGTCAAAACCATCCACACTAACTATTTCTCTAAAC GGTTCTTCACATTTTGACTTTGGTTGACGCACTAAATCTTTTCATGTGGAATTGAAACCTGAAATCACAAATAGATTGAA GTTACACATTAGCAAAACCAGAAGAAAGATTAAAGAGATAGAGAGAATTTGCAATTAAAGAAGTAAGAAAATCACCTTAT AGTGAGTCTGATCACTTCTCCTTTTGGATAAGAGATCTTGATGATCTCTCACAAAAAAATGCAACTTTATCAGGACATGA CCTTTTCCCAGCGCAGGATCTCACACTTATCCTTTTCATTATTAATTTTTAATTGAAAGTTATTATCTCACTAAAGAATG GACTTTTCCCTATGCAGGTTTTTTGCGGATTGTCTTCCTTAGGCTTCCCTTGATGATTAAGGGTTTGTGAAAAGCTATTG GATATCAATGGCCAATGACAGGATTAGCACGTTACCAGATGAAGCCCTTTATCACATTCTCTCTTTTCTTCCAACTCAAA TGGCTGCAGCCACAAGTATTCTTTCAAAGAGGTGGACGCCACTGTGGCTCTCAGTTCCTTCTCTCTTCTTTGACGACCAA AGCTACCTCCGTAACCACAAACCCTATCTATATTTCACAAAATTCATATATGCAACCATTCTCGACAGAGATGTGCCCAT TAGAATGTTTCGTTTGCAATGTGAGGCTTCTAGTTCCGATCTTTCTGGTTCCGATCTCAAAATATGGATCAAAGCTGCAA TACAACGTGGACTTGAGAACCTCTACATCCTGCTGCCCCCTATACCTAATGTTTTTCGACCGAACTTGAGCAGCTGCATT TTCTGCTGCAAAACTCTTGTTGTTCTCAAGTTGGTAGGGTTAAATGTGGATGAATTTTCTTCTGTTGACCTTCCTTCACT CAAAACTCTGCATTTTCACAATGTTGTGTTTCAAGAACCGCATTATTTTTTGGATCTTCTTGCTGGGTGTCCAATTCTTG AGTATATGCATCTGACGCATGTATACTATATCTATGCCGATGCTGTTGATTATATTCCTAGTGACAGGAACTTTGGAAGC TTATCTAAGTTGGTCAGGGCAGAAATACATAGCATTGATTTTGATACTTTTGTAGAATCTCTTGGCATTGACAAGGTTTG TATAAATGCTACGAAGTGTGTTTCAATTTTTTAAAAATGTCACTAATGTTTGTGATTACTCCTTTTGACTCTTGCAGTAC CTGGAAGACATTCCAATTTTTCCCAGTTTAACTCATCTGGAGCTTATGTGGTGGGGATGTAAAATGAATTGGCCTTTGGT GCTTTCAATGCTCAAGCAGTGCCCTATGCTTCAAAACTTTGTCCTTAATATGGAGACAAGTACTGATTTTGATGATGTGG TTTGGATTTCACCCCCAGTTGTCCCTGAATGCCTTTCTTCACAGCTTAGGAAATGTTCCATGACAAATTATGAAGGCACG AAAAGTGAGCTCAATTTTGCAGAATATGTTATGCAGAATTCAAGAGCTTTACAGACGATGACAATAAGCACCCGGTGTTC CTCAGAATTAATGGTCGACAAGCTTGAACTGTTTGAAAAATTGTCCTCATGCCCAAGGAGTTCCAGGATTTGTGAACTTT CATTTACATGACAATGAAGGACAGGCTCTACTTGGTAGATGGAAATTGTGTTTTAGATTATTGCATTTGAATTTGGTTTA CCTACAGATAGTACAACTGCTAGTCTTTTGAAGGACATGGTATCTGTCTCTTGTTCAATAATAGTCCTTAAATGTCATAA TTTTTCAACGAAGTGAAGATTTGTGTTTTTAATAAAATGACTAGCTCCTTTTAAGCTATACAAGTATTTTTTTGGACTTG AGTTA
CDS sequence (LotjaGi1g1v0542500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAATGACAGGATTAGCACGTTACCAGATGAAGCCCTTTATCACATTCTCTCTTTTCTTCCAACTCAAATGGCTGC AGCCACAAGTATTCTTTCAAAGAGGTGGACGCCACTGTGGCTCTCAGTTCCTTCTCTCTTCTTTGACGACCAAAGCTACC TCCGTAACCACAAACCCTATCTATATTTCACAAAATTCATATATGCAACCATTCTCGACAGAGATGTGCCCATTAGAATG TTTCGTTTGCAATGTGAGGCTTCTAGTTCCGATCTTTCTGGTTCCGATCTCAAAATATGGATCAAAGCTGCAATACAACG TGGACTTGAGAACCTCTACATCCTGCTGCCCCCTATACCTAATGTTTTTCGACCGAACTTGAGCAGCTGCATTTTCTGCT GCAAAACTCTTGTTGTTCTCAAGTTGGTAGGGTTAAATGTGGATGAATTTTCTTCTGTTGACCTTCCTTCACTCAAAACT CTGCATTTTCACAATGTTGTGTTTCAAGAACCGCATTATTTTTTGGATCTTCTTGCTGGGTGTCCAATTCTTGAGTATAT GCATCTGACGCATGTATACTATATCTATGCCGATGCTGTTGATTATATTCCTAGTGACAGGAACTTTGGAAGCTTATCTA AGTTGGTCAGGGCAGAAATACATAGCATTGATTTTGATACTTTTGTAGAATCTCTTGGCATTGACAAGTACCTGGAAGAC ATTCCAATTTTTCCCAGTTTAACTCATCTGGAGCTTATGTGGTGGGGATGTAAAATGAATTGGCCTTTGGTGCTTTCAAT GCTCAAGCAGTGCCCTATGCTTCAAAACTTTGTCCTTAATATGGAGACAAGTACTGATTTTGATGATGTGGTTTGGATTT CACCCCCAGTTGTCCCTGAATGCCTTTCTTCACAGCTTAGGAAATGTTCCATGACAAATTATGAAGGCACGAAAAGTGAG CTCAATTTTGCAGAATATGTTATGCAGAATTCAAGAGCTTTACAGACGATGACAATAAGCACCCGGTGTTCCTCAGAATT AATGGTCGACAAGCTTGAACTGTTTGAAAAATTGTCCTCATGCCCAAGGAGTTCCAGGATTTGTGAACTTTCATTTACAT GA
Protein sequence (LotjaGi1g1v0542500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANDRISTLPDEALYHILSFLPTQMAAATSILSKRWTPLWLSVPSLFFDDQSYLRNHKPYLYFTKFIYATILDRDVPIRM FRLQCEASSSDLSGSDLKIWIKAAIQRGLENLYILLPPIPNVFRPNLSSCIFCCKTLVVLKLVGLNVDEFSSVDLPSLKT LHFHNVVFQEPHYFLDLLAGCPILEYMHLTHVYYIYADAVDYIPSDRNFGSLSKLVRAEIHSIDFDTFVESLGIDKYLED IPIFPSLTHLELMWWGCKMNWPLVLSMLKQCPMLQNFVLNMETSTDFDDVVWISPPVVPECLSSQLRKCSMTNYEGTKSE LNFAEYVMQNSRALQTMTISTRCSSELMVDKLELFEKLSSCPRSSRICELSFT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 2 | 232 | 231 | 1.4E-19 | ||
PANTHER | 3 | 370 | 368 | 3.5E-84 | – | |
PANTHER | 3 | 370 | 368 | 3.5E-84 | – | |
ProSiteProfiles | 3 | 51 | 49 | 8.994 | ||
SUPERFAMILY | 3 | 48 | 46 | 8.37E-11 | ||
SUPERFAMILY | 118 | 281 | 164 | 5.76E-10 | – | |
Pfam | 298 | 339 | 42 | 2.4E-14 | ||
SMART | 300 | 373 | 74 | 7.6E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0542500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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