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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0543300 |
| Transcript ID | LotjaGi1g1v0543300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Epsin; TAIR: AT3G46540.1 ENTH/VHS family protein; Swiss-Prot: sp|P47160|ENT3_YEAST Epsin-3; TrEMBL-Plants: tr|K7MVE1|K7MVE1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0543300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107244800..107247803) extracted from Lotus japonicus Gifu genome v1.2.
AGTAACATACTTCTTGATGAAGTTTTCAATATTTTAATATTTCATACTCTTATATAAACACAGTTCTTGTATTTTGTGTC TTCCTCTATTTCTCTCCCTCGACCGTGTGTCTTTTAGTTTTTACAAGTGTGGCTGATATCAATTATTCTCAAAATTCTTC TAAAGAAGACAGAAAATATGAGCTCTCCTCTCATCCATGAAATCAAAGGGCAAACTTTTCGATTCTTGAAGGAGAAGATT AAAACTGCAAGGCTAGTTCTGACAGATGTAACCCCAGTTCAACTGTAAGTCTTCCTTTTCCTCTACTTAATTTTTCATCT CAACTCAATCATGCTATAAGCTCTTCATGATCATTTATTTGAGCTCAATCATGCTGCTATAAGCTCTTCTAGACAAAGGA ATACACAGAGACAAAAAATCAAAAAAATTACATAAGATAGCAGTAGCATGAACTTTACACAGACTATTAGCTAGAATCAC TGTTAACAAGATCAATTCCAACTATTATCAATACATACTAACCCCCAACCAATAAAAATTGCAACTTGGGAAACATTTCC ACCACTCTGTCTCGCATGCCCCACCAAACCTAAAATGCACATTCTCCAATAAGAGCCAATAAGGTGATGTTGCCACTTGC TGCTTCTTATTCAAATGATATCTCCATAATTAATTAGGCCCAAATGAGTCTTGGGCCAAATAATAGCATCCCTGCAGGTA AAAACTATTGAAATGGCATAGCATCACAAGTTTATTTTTCCATCACCATAAACCAGAATACTCCACTATATATAAAAGAA TCACATATAACATCCCAGATTTCCACCTTCCATTCTATGACAACCATCCATCTCTCAGCCAACACCTTCCAAGCATAGTT TCGGGTTGGAGTACCATTCGAAAATTAAACATGTAAAATTTCTTTTCAAATGTTTTTTGGAATGAGTTTCCAAACGTTCA CTAAATTTCTTCACAAAGTTGATTCTAACTACAAAATCAATGTAGAAGTATTGCAAACATGTTAATTAACAATAAGCAAG TTTAACTAACCAAAAAATTCTCATGACTTCTACAAGATGAGTTAGTATTTAGTTGAACTTAGTGCATGGTTAGTTGAACT TCTACATTGGTTTTGCAGCTTGAATCAATTTTGTGAAGAAACTTAGTGCATGTTTGAAAACTCATTCCAAAATCATGAGA TCTTGGCTCAGTTGGGAATGGTGTTTTAGCACCCGACGATGGGTTCAAATACTCCTCCCCTCACCCACCAAATTGATCAT TTAGCCAAAAGAAATTTACAAAGAGTGCATCAACTTTTTTCTTTTTATTCTCTTTGGGTACAATCAAATACTTGGTTTTT GATTTATGTTTCACTTATTCTTATGGTAACCGGCACTTAAGAATGACTGAAGAAGCCACAAGCGAGAATCCATGGCCACC AGACACAAGTACCATGAGAATAATATCGCATGCTGCCTTTGAAGTTGATGAATACGAGAGAATTGTGCATATTTTACATC ACAGGTTCGTGTTTTCTTATATCTTTATTTGATTGTGCCGTTTTGATCTAAAAGACTCTTTTCTTGAAGTGTAATGTCGG TTTTCTGTTTATGTGGAGAAATTACAGGTTGTCCAAATTTGATAAAGGGTCTTGGAGAGCCTCGTATAAGACACTAATTT TATTGGAACATGTTCTAACTCATGGACCAAAAAGAGTGTTTGAGGAGTTTCAATGTGATCATATAAATGTTATTGAAGAG ATTGGAAAACTTCAATATGTTGATGAGAAAGGGTAGGTGTGCAGTTCCAAATTAAATACTTCATCCGTTCCTATTTATCT GTACAGGAAGAGAATGTTCATACAAATTAAGGAAAATAATTAATTGTGTTGATTTTCATAACAGTATTATTTGTTATCCT ATATCACCCTTTAGAATGTATTTTATCTTTTTTCATTTATTGCTTATGTAAGGGCATTTCTTGGAAAAACATCAATTAAT GCTCTCTTTAAACTCTAAGTTGACAGTTATATAGGAACAAAAAAAATTCTTCAAAGTTGACAGTTAATAAGGAACGGATT ACGGAGGGAGTATTTTTCTGTGACTCAAACCTAATTTGTTAATTTCATGAATATAATGTCTGTTGCGCAATGTAGACGAA CTTTCATCTCAATTCGTAAGAAGTCATTGAGTTTTTATTTGGAACTGAGTGTTAATGTCAATTTATACGGAAATCGAAAC ATAACCTTGGAGAAGAATCTTGTTACATTTTTACAGGGTCAACTGGGGTTTGTGTGTAAGAACATTATCACAGAGAATGC TAAAGCTCTTAGGAAACAAGGATTTTCTCAAAGAAGAAAGAGAAAGAGCACGTAATCTTTCACATGCGATACAAGGTTTT GGAAGTTTTAGCCAAGGAAGCTCAAGCTCAGCAATAAATGAAAGGTTACATGACACTTCTTCTAAGAAATATGGGAGATG TAAGTCTGACTATGGTGATCATCACCATCATGAACAATATGATGATTTCACAAGCTTAGAAAAGAAACTCGTTTCAGAGG ATGGAAATAAAAGAATGGCGAAGCAACATGTTTTCGGAAACGAGAACTTCAAGCTACTAAAGCAAGAAAATGACTCGAAT TCAGGAATCAGGAGAAGACATAGAAGAACAATAGCACTTGACCAAGAGAACCAGCTGACAACAATATCCCTGCTTTCTGT GAAATGAGAAGTTACAAGAAATTACATAGTATAATTATTAGAAGAAGAGAACTGAATTGCTTATTCAGGTGCTGTGTTAG TTGTGAGGGGTTGTTATATTTTGTTTAAAGTTTCATTTGCTACTCAGTTAACTGAAGTCACCAATTAGTACCGTGAATAC TCAATTTTGTCTTTATTATTATTATTAAAAATATTTAAAAAATAGAAAAGTATTCAAAAAAGAAAGACGATACAAGGGCA GCCAGATAAGAATAAAAGAGAACAAAAGACAAGGTGAAATTTCG
CDS sequence (LotjaGi1g1v0543300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTCTCCTCTCATCCATGAAATCAAAGGGCAAACTTTTCGATTCTTGAAGGAGAAGATTAAAACTGCAAGGCTAGT TCTGACAGATGTAACCCCAGTTCAACTAATGACTGAAGAAGCCACAAGCGAGAATCCATGGCCACCAGACACAAGTACCA TGAGAATAATATCGCATGCTGCCTTTGAAGTTGATGAATACGAGAGAATTGTGCATATTTTACATCACAGGTTGTCCAAA TTTGATAAAGGGTCTTGGAGAGCCTCGTATAAGACACTAATTTTATTGGAACATGTTCTAACTCATGGACCAAAAAGAGT GTTTGAGGAGTTTCAATGTGATCATATAAATGTTATTGAAGAGATTGGAAAACTTCAATATGTTGATGAGAAAGGGGTCA ACTGGGGTTTGTGTGTAAGAACATTATCACAGAGAATGCTAAAGCTCTTAGGAAACAAGGATTTTCTCAAAGAAGAAAGA GAAAGAGCACGTAATCTTTCACATGCGATACAAGGTTTTGGAAGTTTTAGCCAAGGAAGCTCAAGCTCAGCAATAAATGA AAGGTTACATGACACTTCTTCTAAGAAATATGGGAGATGTAAGTCTGACTATGGTGATCATCACCATCATGAACAATATG ATGATTTCACAAGCTTAGAAAAGAAACTCGTTTCAGAGGATGGAAATAAAAGAATGGCGAAGCAACATGTTTTCGGAAAC GAGAACTTCAAGCTACTAAAGCAAGAAAATGACTCGAATTCAGGAATCAGGAGAAGACATAGAAGAACAATAGCACTTGA CCAAGAGAACCAGCTGACAACAATATCCCTGCTTTCTGTGAAATGA
Protein sequence (LotjaGi1g1v0543300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPLIHEIKGQTFRFLKEKIKTARLVLTDVTPVQLMTEEATSENPWPPDTSTMRIISHAAFEVDEYERIVHILHHRLSK FDKGSWRASYKTLILLEHVLTHGPKRVFEEFQCDHINVIEEIGKLQYVDEKGVNWGLCVRTLSQRMLKLLGNKDFLKEER ERARNLSHAIQGFGSFSQGSSSSAINERLHDTSSKKYGRCKSDYGDHHHHEQYDDFTSLEKKLVSEDGNKRMAKQHVFGN ENFKLLKQENDSNSGIRRRHRRTIALDQENQLTTISLLSVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 241 | 241 | 2.7E-103 | – | |
| PANTHER | 1 | 241 | 241 | 2.7E-103 | – | |
| SUPERFAMILY | 13 | 160 | 148 | 3.05E-36 | ||
| ProSiteProfiles | 26 | 160 | 135 | 26.62 | ||
| Gene3D | 27 | 175 | 149 | 1.4E-39 | ||
| SMART | 32 | 160 | 129 | 1.4E-19 | ||
| Pfam | 32 | 156 | 125 | 3.6E-25 | ||
| CDD | 34 | 150 | 117 | 9.31947E-40 | – | |
| Coils | 146 | 166 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0543300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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