Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013809
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 53 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.121s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0158299.1
n.a. epsin N-terminal homology (ENTH) domain-containing protein [Medicago truncatula] gi|357466187|ref|XP_003603378.1| chr0 74132785 74133582 -
3 domain predictions
 –
Lj0g3v0296149.1
n.a. n.a. chr0 153901678 153901852 -
2 domain predictions
 –
Lj0g3v0300229.1
n.a. PREDICTED: epsin-3-like [Glycine max] gi|356539012|ref|XP_003537994.1| chr0 155970854 155976601 -
4 domain predictions
 –
Lj1g3v1526040.1
n.a. fiber protein Fb19 [Gossypium barbadense] gi|30841458|gb|AAP34366.1| chr1 18159861 18161303 +
3 domain predictions
 –
Lj1g3v1889550.1
n.a. Epsin N-terminal domain-containing protein / clathrin assembly protein-related isoform 1 [Theobroma cacao] gi|508782208|gb|EOY29464.1| chr1 22586674 22590430 -
3 domain predictions
 –
Lj1g3v3231370.3
n.a. PREDICTED: epsin-2-like [Glycine max] gi|356569012|ref|XP_003552701.1| chr1 36626268 36627719 -
4 domain predictions
 –
Lj1g3v3231370.4
n.a. PREDICTED: epsin-2-like [Glycine max] gi|356569012|ref|XP_003552701.1| chr1 36626268 36629966 -
4 domain predictions
 –
Lj1g3v3329210.1
n.a. PREDICTED: clathrin interactor EPSIN 3-like isoform X2 [Cicer arietinum] gi|502090135|ref|XP_004489132.1| chr1 37578955 37586780 +
4 domain predictions
 –
Lj2g3v0521150.1
n.a. n.a. chr2 6901893 6911480 +
3 domain predictions
 –
Lj3g3v2315220.1
n.a. PREDICTED: VHS domain-containing protein At3g16270-like [Glycine max] gi|356522998|ref|XP_003530129.1| chr3 28229694 28234425 +
2 domain predictions
 –
Lj3g3v3200820.1
n.a. PREDICTED: epsin-3-like [Glycine max] gi|356539012|ref|XP_003537994.1| chr3 39507892 39509801 -
4 domain predictions
 –
Lj4g3v0336780.1
n.a. ENTH/ANTH/VHS superfamily protein [Theobroma cacao] gi|508706974|gb|EOX98870.1| chr4 4160933 4161585 +
3 domain predictions
 –
Lj4g3v1881390.1
n.a. epsin N-terminal homology (ENTH) domain-containing protein [Medicago truncatula] gi|357478179|ref|XP_003609375.1| chr4 26447614 26450273 -
3 domain predictions
 –
Lj4g3v1881980.1
n.a. ENTH/ANTH/VHS superfamily protein isoform 1 [Theobroma cacao] gi|508783924|gb|EOY31180.1| chr4 26772290 26777778 -
3 domain predictions
 –
Lj4g3v2137090.1
n.a. Phosphoprotein-like protein [Medicago truncatula] gi|357479541|ref|XP_003610056.1| chr4 29351363 29353960 -
3 domain predictions
 –
Lj4g3v2401050.1
n.a. ENTH/VHS/GAT family protein [Arabidopsis thaliana] gi|15222535|ref|NP_173895.1| chr4 33311278 33313331 -
2 domain predictions
 –
Lj4g3v2731610.1
n.a. fiber protein Fb19 [Gossypium barbadense] gi|30841458|gb|AAP34366.1| chr4 36750129 36751860 -
3 domain predictions
 –
Lj5g3v0348740.1
n.a. PREDICTED: clathrin interactor EPSIN 1-like isoform 1 [Glycine max] gi|356564095|ref|XP_003550292.1| chr5 3384921 3390987 +
4 domain predictions
 –
Lj5g3v2300270.1
n.a. PREDICTED: clathrin interactor EPSIN 3-like [Glycine max] gi|356534510|ref|XP_003535796.1| chr5 33992776 33998308 +
4 domain predictions
 –
Lj6g3v2221970.1
n.a. ENTH/ANTH/VHS superfamily protein [Theobroma cacao] gi|508706974|gb|EOX98870.1| chr6 25938802 25939304 -
2 domain predictions
 –
Lj6g3v2221980.1
n.a. ENTH/ANTH/VHS superfamily protein [Theobroma cacao] gi|508706974|gb|EOX98870.1| chr6 25939358 25940410 -
2 domain predictions
 –
LotjaGi1g1v0341300.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT4G40080.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8L936|CAP16_ARATH Putative clathrin assembly protein At4g40080; TrEMBL-Plants: tr|A0A0L9UG74|A0A0L9UG74_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0341300 LjG1.1_chr1 80338552 80340166 +
3 domain predictions
 –
LotjaGi1g1v0382900.1
n.a. Clathrin assembly family protein; TAIR: AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein; Swiss-Prot: sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430; TrEMBL-Plants: tr|A0A151RLK9|A0A151RLK9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi1g1v0382900 LjG1.1_chr1 86633021 86636671 +
3 domain predictions
 –
LotjaGi1g1v0382900.2
n.a. Clathrin assembly family protein; TAIR: AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein; Swiss-Prot: sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430; TrEMBL-Plants: tr|A0A151RLK9|A0A151RLK9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi1g1v0382900 LjG1.1_chr1 86633615 86636163 +
3 domain predictions
 –
LotjaGi1g1v0382900.3
n.a. Clathrin assembly family protein; TAIR: AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein; Swiss-Prot: sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430; TrEMBL-Plants: tr|A0A151RLK9|A0A151RLK9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi1g1v0382900 LjG1.1_chr1 86633644 86635617 +
3 domain predictions
 –
LotjaGi1g1v0543300.1
n.a. Clathrin interactor EPSIN-like protein; TAIR: AT3G46540.1 ENTH/VHS family protein; Swiss-Prot: sp|Q93YP4|EPN3_ARATH Clathrin interactor EPSIN 3; TrEMBL-Plants: tr|A0A151TD61|A0A151TD61_CAJCA Epsin-3; Found in the gene: LotjaGi1g1v0543300 LjG1.1_chr1 107244800 107247803 -
4 domain predictions
 –
LotjaGi1g1v0543300.2
n.a. Epsin; TAIR: AT3G46540.1 ENTH/VHS family protein; Swiss-Prot: sp|P47160|ENT3_YEAST Epsin-3; TrEMBL-Plants: tr|K7MVE1|K7MVE1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0543300 LjG1.1_chr1 107244800 107247803 -
4 domain predictions
 –
LotjaGi1g1v0543400.1
n.a. ENTH/VHS family protein; TAIR: AT3G46540.1 ENTH/VHS family protein; Swiss-Prot: sp|P47160|ENT3_YEAST Epsin-3; TrEMBL-Plants: tr|A0A151TD61|A0A151TD61_CAJCA Epsin-3; Found in the gene: LotjaGi1g1v0543400 LjG1.1_chr1 107257637 107261605 -
4 domain predictions
 –
LotjaGi1g1v0543400.2
n.a. ENTH/VHS family protein; TAIR: AT3G46540.1 ENTH/VHS family protein; Swiss-Prot: sp|P47160|ENT3_YEAST Epsin-3; TrEMBL-Plants: tr|A0A151TD61|A0A151TD61_CAJCA Epsin-3; Found in the gene: LotjaGi1g1v0543400 LjG1.1_chr1 107257637 107261605 -
4 domain predictions
 –
LotjaGi1g1v0553000.1
n.a. Clathrin interactor EPSIN-like protein; TAIR: AT2G43160.1 ENTH/VHS family protein; Swiss-Prot: sp|Q67YI9|EPN2_ARATH Clathrin interactor EPSIN 2; TrEMBL-Plants: tr|A0A0B2PT83|A0A0B2PT83_GLYSO Clathrin interactor EPSIN 3; Found in the gene: LotjaGi1g1v0553000 LjG1.1_chr1 108484154 108492449 +
4 domain predictions
 –
LotjaGi2g1v0007300.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT1G25240.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|Q9FRH3|CAP13_ARATH Putative clathrin assembly protein At1g25240; TrEMBL-Plants: tr|A0A151R3S9|A0A151R3S9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi2g1v0007300 LjG1.1_chr2 2642398 2644705 -
2 domain predictions
 –
LotjaGi2g1v0373100.1
n.a. ENTH/VHS family protein; TAIR: AT3G46540.1 ENTH/VHS family protein; Swiss-Prot: sp|P47160|ENT3_YEAST Epsin-3; TrEMBL-Plants: tr|I1LK28|I1LK28_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0373100 LjG1.1_chr2 87021797 87026945 -
4 domain predictions
 –
LotjaGi3g1v0283200.1
n.a. Epsin; TAIR: AT3G46540.1 ENTH/VHS family protein; Swiss-Prot: sp|O95208|EPN2_HUMAN Epsin-2; TrEMBL-Plants: tr|I1MDF6|I1MDF6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0283200 LjG1.1_chr3 57011906 57019730 -
4 domain predictions
 –
LotjaGi3g1v0283200.2
n.a. Epsin; TAIR: AT3G46540.1 ENTH/VHS family protein; Swiss-Prot: sp|O95208|EPN2_HUMAN Epsin-2; TrEMBL-Plants: tr|A0A151SUR4|A0A151SUR4_CAJCA Epsin-3; Found in the gene: LotjaGi3g1v0283200 LjG1.1_chr3 57017026 57019246 -
4 domain predictions
 –
LotjaGi3g1v0368300.1
n.a. VHS domain-containing protein; TAIR: AT3G16270.1 ENTH/VHS family protein; Swiss-Prot: sp|Q9C5H4|Y3627_ARATH VHS domain-containing protein At3g16270; TrEMBL-Plants: tr|I1KGL0|I1KGL0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0368300 LjG1.1_chr3 75466499 75471456 +
2 domain predictions
 –
LotjaGi4g1v0032300.1
n.a. Clathrin assembly family protein; TAIR: AT1G03050.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050; TrEMBL-Plants: tr|A0A1J7IJM8|A0A1J7IJM8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0032300 LjG1.1_chr4 3964684 3969400 +
3 domain predictions
 –
LotjaGi4g1v0273600.1
n.a. Clathrin assembly family protein; TAIR: AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-like protein; Swiss-Prot: sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430; TrEMBL-Plants: tr|I1LZP6|I1LZP6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0273600 LjG1.1_chr4 64277510 64280327 -
3 domain predictions
 –
LotjaGi4g1v0275800.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT5G35200.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200; TrEMBL-Plants: tr|I3SKY7|I3SKY7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0275800 LjG1.1_chr4 64612776 64619032 -
3 domain predictions
 –
LotjaGi4g1v0275800.2
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT5G35200.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200; TrEMBL-Plants: tr|I3SKY7|I3SKY7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0275800 LjG1.1_chr4 64612791 64619161 -
3 domain predictions
 –
LotjaGi4g1v0275800.3
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT5G35200.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200; TrEMBL-Plants: tr|I3SKY7|I3SKY7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0275800 LjG1.1_chr4 64613551 64618469 -
3 domain predictions
 –
LotjaGi4g1v0305400.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT4G25940.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940; TrEMBL-Plants: tr|I1LVM2|I1LVM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0305400 LjG1.1_chr4 68109096 68114381 -
3 domain predictions
 –
LotjaGi4g1v0354300.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT1G25240.1 ENTH/VHS/GAT family protein; Swiss-Prot: sp|Q9FRH3|CAP13_ARATH Putative clathrin assembly protein At1g25240; TrEMBL-Plants: tr|I1K3B5|I1K3B5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0354300 LjG1.1_chr4 73276505 73278781 -
2 domain predictions
 –
LotjaGi4g1v0358800.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT2G01600.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600; TrEMBL-Plants: tr|A0A151T2E9|A0A151T2E9_CAJCA Putative clathrin assembly protein family; Found in the gene: LotjaGi4g1v0358800 LjG1.1_chr4 73755873 73764095 -
3 domain predictions
 –
LotjaGi4g1v0393700.1
n.a. ENTH/ANTH/VHS superfamily protein, putative; TAIR: AT4G40080.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q8L936|CAP16_ARATH Putative clathrin assembly protein At4g40080; TrEMBL-Plants: tr|A0A1J7GIT1|A0A1J7GIT1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0393700 LjG1.1_chr4 77213839 77215592 -
3 domain predictions
 –
LotjaGi5g1v0039600.1
n.a. Clathrin interactor EPSIN 1; TAIR: AT5G11710.1 ENTH/VHS family protein; Swiss-Prot: sp|Q8VY07|EPN1_ARATH Clathrin interactor EPSIN 1; TrEMBL-Plants: tr|I1M8Y5|I1M8Y5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0039600 LjG1.1_chr5 6680642 6695561 +
4 domain predictions
 –
LotjaGi5g1v0189900.1
n.a. ENTH/VHS family protein, putative; TAIR: AT3G23350.1 ENTH/VHS family protein; Swiss-Prot: sp|O95208|EPN2_HUMAN Epsin-2; TrEMBL-Plants: tr|G7I4V3|G7I4V3_MEDTR ENTH/ANTH/VHS superfamily protein; Found in the gene: LotjaGi5g1v0189900 LjG1.1_chr5 47928925 47932460 -
4 domain predictions
 –
LotjaGi5g1v0364500_LC.1
n.a. Clathrin interactor EPSIN-like protein; TAIR: AT2G43160.4 ENTH/VHS family protein; Swiss-Prot: sp|Q93YP4|EPN3_ARATH Clathrin interactor EPSIN 3; TrEMBL-Plants: tr|A0A151U890|A0A151U890_CAJCA Epsin-2; Found in the gene: LotjaGi5g1v0364500_LC LjG1.1_chr5 67904888 67914200 -
4 domain predictions
 –
LotjaGi6g1v0022100.1
n.a. Clathrin assembly protein; TAIR: AT1G05020.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180; TrEMBL-Plants: tr|K7LYR1|K7LYR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022100 LjG1.1_chr6 4175036 4178090 +
3 domain predictions
 –
LotjaGi6g1v0022100.2
n.a. Clathrin assembly protein; TAIR: AT1G05020.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180; TrEMBL-Plants: tr|K7LYR1|K7LYR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022100 LjG1.1_chr6 4175342 4177530 +
2 domain predictions
 –
LotjaGi6g1v0199000.1
n.a. ENTH/ANTH/VHS superfamily protein; TAIR: AT5G35200.1 ENTH/ANTH/VHS superfamily protein; Swiss-Prot: sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200; TrEMBL-Plants: tr|A0A072TEL9|A0A072TEL9_MEDTR Clathrin assembly protein; Found in the gene: LotjaGi6g1v0199000 LjG1.1_chr6 49574298 49578860 -
3 domain predictions
 –