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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0543400 |
| Transcript ID | LotjaGi1g1v0543400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ENTH/VHS family protein; TAIR: AT3G46540.1 ENTH/VHS family protein; Swiss-Prot: sp|P47160|ENT3_YEAST Epsin-3; TrEMBL-Plants: tr|A0A151TD61|A0A151TD61_CAJCA Epsin-3; Found in the gene: LotjaGi1g1v0543400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107257637..107261605) extracted from Lotus japonicus Gifu genome v1.2.
TTACGTACATAGGTAGGGAAAATGGGAAATTATTTATGTATATACGACACAACTAATCTTGAGTCTTCATCATTATTATC CTCAAAATTCTTCCAGAGAAGACAGAAAACATGAGCTCTCCTCTCATCCATGAAATCAAAGGACAAGCTTTTCGATTCTT GAAGGAGAAGATCAAAACTGCAAGGCTAGTTCTGACAGATGTTACTCCAGTCCAATTGTAAGTCTTAGCTTCCTTTTCCT CTACTTGATTTTTCATCTCAACTCAATCATGCTATAAGCTATTGGTTTATTTGAGAAAAAAAAAATCCTTCTGCTAGGAT AGCTGTATGTAAACACGTACCAAAAGAATGTTACCACCTATAACTTCAACACGTACCAAAAGATTTTTTCAAGGTTTTTA TGTCTCTTAATATAAGTTCCTTTCTTAGAATAAAAAAAAATTCCTTTCAAATATTTATGAAACATTAAATAAATTTTTTC AATTTTATCCTTAACATTTTTTTTAAAAGCTAAAGGACAATATTATGGACTAAAGCCTGTGCACACGTATAAACATTGTT TACACAGTCTTGCCAAATAAAAAATATGTTTTTCCTTTAATTAAAATTTGAAATGAAATTAATTGTTCAATCCACATTAC ATACCATGATTGATTGTTAGTGAAAAACTGTTTTACACAAACAATGTATATCCGTTAAACTATAATATATTATTAAAGAA ATATGAGAACAACCATTCCAATAGTACGTAGTTTAAAGTCCAAAACCAACAACCCAAACAAAATACACCAAAAGTTCCCA TATACAAAACACCCGATAAACCAAAATGGAAACCCCAAAACAATGCTAAAACCTAACAAAAAAATACAGGCTCCTCAAGG GCGGATTCAGACATTATATATCGGTGTGGCTAAACATAAAAAAAATTATAGACTAAAATACAAAGTAGAAATTATATTAG GTAGCAAGCAAGAAGTAGCTATAATCTCACATGAAAAGCAGAAAAGTTTATTCAACCATGAAAAGTTAAGACTAATTTGT GCAGTAAAAATGACAAATTTTGCTTTTTTGGGAGAAAACATTACAATGCTGCTAATTTAACATTCCAAAATTTGCAGCCA CGAATCAACAATCATAACAGGAAAACTCATCAGCAAAAACAAACAGAGGTAGCTCCAAACCCAACATGGTTCCATCAAAG AACTCAGATCTGCTGAGTTCACAAGCAAAAATTCTCACCCAAAAAATCGATCCAACTCAACACGTGCAACAAGTTCATAA ACCAAAAAAAATCTTTGAAAATTGAAAATAAAAAAAATAGAAATAGGAAAAGATCATCCAACATGAATTGTGTGTAGCGT AGTAAGGTGAATTACGAAGTTGATTTACCTGAGACAATGAATCAATTGGATTTCCTCTTGAATTGTGGTTGATTGGTGCG GTGATCAGCTTCTCCATACGATGAGAAATTTAGGAAGGTGAAGATTGGTGGGTTTTCAATTTTTGGGGAAAAGGGTTTTA AGTTGATGAATGCCGAAAAGCAGCAATGGAAGAAAGAAAGAAAGAAAAACCACGTCCTAATTTGATGTTAAACGTGAATT TTGATTTTTTACTTATTAAGCTATGGCGGCGCTTTGATCGTCGCCATACATTAACACAAAACTTTTAGCGGCGGATCCAG AACCGCCGCTATATACGATATTAACAAAAAAAAAAATCTGGTGTGGCTATAGCCACACCCAGCCTACACGTGGGTCCGCC CATGAGGCTCCCCATAGATAAGAAACATAAAATACAAAACCGAAGCTGAACAAGCTCAAGTAAAAGACCCCTACAGAAAC AATACAAAGAAAACCCAAAGGCAACGCCAAAAAGCTCAAGAGGTTCGCAGCTCCCTAATTTCCTCCTCAAGATTGTGAAT AGCCTTTTGTAAATTCGTTCAGAAACCACGATGAAGTCAAAATCAAGGTGGAAAAAGCAAAAATTAAGAAAGTTGCTTCT GTCCATAAAATTTTAACTTCATCGTGGTTTTTGAACTAATTTCTGAATAAACACTTATATGAGTATTGAGTAGCTTGCCG TTGTCATAATTAATTTTCAGAAAAAATAAGTTAATATTAATATACAAATGTCAAAACTAATTAAGAGAATCAGTTCAAAC ATGTATAATGTGTTTGGATTTACGATGAACACACAATTCAAAGCACGCCAATCTAAAAGCTACATTCTCTCTTATAGTGA TTACCAAGTTTCTAACTACAGACTCAAATATAGCAAATATTTTTTTTTTTTTTGGGTTTAACTATTTGATTTGGTTTGGG TACAATCCAAATACTTGATTTTTGATATGCTTCGCTCACTCTTTGGGTAACCGGCACTTAAGAATGACTGAAGAAGCTAC AGACGAGAATCCATGGCCACCAGACACACGTACCATGAGAATAATATCGCATGCTGCCTTTGAAGTCGATGAATATGAGA GAATTGTGCATATTTTACATCACAGGTTCCTGGTTTTTTATATCTTTAATTTATTTGATCATGTTGCTTTAATCTAGAGA CTCTTTTCTTGTAGTGTAATGTTGGTTTTCTGTTTATGTGGAGAAATTACAGGTTGTCCAAATTTGATAAAGGGTATTGG AGAGCCTCATATAAGACTCTAATTTTATTGGAACATCTTCTAACTCATGGACCTAAGAGAGTCTCTGAAGAGTTTCAAAG TGATCATATAAATGTTATTGAAGAGATTGGAAAACTTCAATATGTTGATGAGAAAGGGTAGGTGTCCAATCTCAAATAAT TTTTTTGTGATTAAAACTTTGTTCTATGAATGTAAATGTGTAAGTTGGGTGCAATGTAAATGAACTTTCATGTTAACATG TAAGAAGTCCGTCGACTTTTTATCTTAGAGTAAATGCTAATTAACGTCCATTCACATTATTATCCAAATATAGCCTTAGA CCTTGTTACATTTCATTTTTTGAGTTGTACTACGTGAACATATGGTTTGGTGTTAGCATACAAATTAGTGGTGAATTTTA AACGTTGCAAATATTTGTGGCTGTTAAAAACCTCCACTAATTTGGGCCTGTATGTCAAGACACAAACCATATGTCTAGCT AACATTTTCGTTCACTTTTACAGGTTCAACTGGGGTTTGTGTGTAAGAAGATTGTCACAAAGAATACTAAAGCTCTTGGC AAACAAGGATTTTCTCAAAGAAGAAAGAGAAAGAGCTCGTCATCTTTCACATGGGATCCAAGGTTTTGGAAGTTTTAACC AACGAAGCTCAGCAATAAATGAAAGGTTACATGACACACCTTCTAAGATATATGGAAGATGTAATTCTGACTATGGTGAA AAATATGAAGATTTCACAATCTTAGAAAAGAAACTCGAAAATAATTCAAATTCAGGAGAAGACATAGAAGAGCAACACCC CTTTGTTGACCAAGAGAAGCTGACTACAACATCACTGCTTTCTGTATAATGAGAAGTAACGAGAATTTACATAATATAAT TATTAGATGATAGGAAGCTATGTTATGGATGAAGAGAGCTGAATTGCTTGTTAGAAGCTCTGGTGTCGTTAGTTGTGAGG GGTTGTATTATTCTGTTTGTAGTTAATTGTAGTTAATTTCATGGCAAACTTAAAAATGCTGGTTGTGTTTTAAACAGCAA CCATGCCCCCCTATATTGACCAATAGTGAGATGCTAGGATGCCATGTCATTATTTTGATTAGTAAATTTTATATTCTAAA CTTGGGTCCCTAAATTTTTTAAAATTTTGTATTTTATCCCTCAACTATTTATAATTTTTAATTGTTTTTGAAATAAAAAA ATTAAGTTAACCTAAAATAATATTTTATTTTGCTCTGTACCTCCGCTGCAAGCCGCCCCCTTAGCGGTGGTTTGTCCTGC CGACATGGATAATTATTGAGTTTGTTTGTGAAATGAGTAAAATTTGCTT
CDS sequence (LotjaGi1g1v0543400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTCTCCTCTCATCCATGAAATCAAAGGACAAGCTTTTCGATTCTTGAAGGAGAAGATCAAAACTGCAAGGCTAGT TCTGACAGATGTTACTCCAGTCCAATTAATGACTGAAGAAGCTACAGACGAGAATCCATGGCCACCAGACACACGTACCA TGAGAATAATATCGCATGCTGCCTTTGAAGTCGATGAATATGAGAGAATTGTGCATATTTTACATCACAGGTTGTCCAAA TTTGATAAAGGGTATTGGAGAGCCTCATATAAGACTCTAATTTTATTGGAACATCTTCTAACTCATGGACCTAAGAGAGT CTCTGAAGAGTTTCAAAGTGATCATATAAATGTTATTGAAGAGATTGGAAAACTTCAATATGTTGATGAGAAAGGGTTCA ACTGGGGTTTGTGTGTAAGAAGATTGTCACAAAGAATACTAAAGCTCTTGGCAAACAAGGATTTTCTCAAAGAAGAAAGA GAAAGAGCTCGTCATCTTTCACATGGGATCCAAGGTTTTGGAAGTTTTAACCAACGAAGCTCAGCAATAAATGAAAGGTT ACATGACACACCTTCTAAGATATATGGAAGATGTAATTCTGACTATGGTGAAAAATATGAAGATTTCACAATCTTAGAAA AGAAACTCGAAAATAATTCAAATTCAGGAGAAGACATAGAAGAGCAACACCCCTTTGTTGACCAAGAGAAGCTGACTACA ACATCACTGCTTTCTGTATAA
Protein sequence (LotjaGi1g1v0543400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPLIHEIKGQAFRFLKEKIKTARLVLTDVTPVQLMTEEATDENPWPPDTRTMRIISHAAFEVDEYERIVHILHHRLSK FDKGYWRASYKTLILLEHLLTHGPKRVSEEFQSDHINVIEEIGKLQYVDEKGFNWGLCVRRLSQRILKLLANKDFLKEER ERARHLSHGIQGFGSFNQRSSAINERLHDTPSKIYGRCNSDYGEKYEDFTILEKKLENNSNSGEDIEEQHPFVDQEKLTT TSLLSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 246 | 246 | 9.7E-115 | – | |
| PANTHER | 1 | 246 | 246 | 9.7E-115 | – | |
| SUPERFAMILY | 13 | 160 | 148 | 2.33E-37 | ||
| ProSiteProfiles | 26 | 160 | 135 | 28.302 | ||
| Gene3D | 27 | 175 | 149 | 1.6E-41 | ||
| SMART | 32 | 160 | 129 | 3.5E-20 | ||
| Pfam | 32 | 156 | 125 | 2.7E-26 | ||
| CDD | 34 | 150 | 117 | 1.40396E-42 | – | |
| Coils | 139 | 166 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0543400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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