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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0543700 |
| Transcript ID | LotjaGi1g1v0543700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT3G55430.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|P52409|E13B_WHEAT Glucan endo-1,3-beta-glucosidase; TrEMBL-Plants: tr|A0A0R0FEM3|A0A0R0FEM3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0543700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107338730..107343155) extracted from Lotus japonicus Gifu genome v1.2.
ATTATGCACACATATAGAAGAGATAATTGAAGTGGCACCACACTATTAATTTATGTGGCTTATTTTGACCAAAGTCCTAA AAAAAGATCCACCTCAATCTCAAACCCCAATCAATCTCTGTTTCTGAAACCTCTGTTTCTTCCACCTATAAATAAACGAT AAGACCGTTGTATGTGACTTTCTAACATCACAACAACAACATCAACAACAAAACCCGTTACAATGGCCACCACCACCTCA ACCTTCCTCCTCCTCTTGCTCCTCCACATCGCCGCCGCCACCACCACCGTCCACGCCATAGGAGTCAACTACGGCACCCT CGGCGACAACCTCCCTCCACCTGCCGCCGTGGCCAACTTCCTCAAGACAAGGACCACCATCGACCGCGTCAAGATCTTCG ATGTCAACCCGCAGATCCTCCAGGCTTTCGCCGGCACCGGCATCAGTGTTACTGTCACGGCGCCCAACGGTGACATTGCT GCGCTCAGAAACATTGATTCTGCTCGCCAATGGGTCGTCACCCACATCAAGCCGTTTCATCCTCAGACGAGAATCAACTA TATCCTTGTTGGTAGCGAGGTTCTTCATTGGGGTGATACCAACATGATCCGTGGCCTTGTTCCTGCCATGAGAACGCTAT ACTCTGCTCTTCAAGCAGAGGGTATCAGAGACATTAAGGTAATAAACAAAACCCACCTCTGTTTTCAGCTGAATTTCAAC CATGAAAATTGCATATTTGAACATGGTTTTCCTTTTTAGACACGATTTGAGCAAAAAAAGAAACAGGGTGTGTGTGTTTT TTTCTTCTCGTTGGGTCATGAATTTGAGCTACGGTTCAAGTATTACCAGAAATTCAGCTCAGATAATAGAAATCTATCTC TCTGTTTTTTCATCAATTTTCTTTTGGATTTTCATTGTTGAAATCTGATTTATTTGTTTTTCTTTGTGGGCGATTCAATT CAGGTTACCACTGCTCATTCTCTGGCAATAATGCGTTCATCTTTGCCACCAAGTGCGGGTAGGTTCAGACCTGGGTTCGC AAAGCACGTGTTGGGTCCTATGCTGAAGTTTCTGAAGGAAACCAGAACACCCTTCATGGTGAACCCTTACCCTTACTTCG GGTACAACCCCAAAAACGTGAACTTCGCACTTTTCCGGCCGAACCGGGGTTTGTTCGACCGGTACACCAAGTTGAGGTAC TCAAACCAGTTTGATGCTCTTATGGACGCGGTTTACTCGGCCATGAAGGCTCTAGGGTATGGTGACGTGGACATTGCCAT CGGTGAGACCGGGTGGCCCTCCGTGTGCGACGGCTGGGATGCCTGCAGTGTGGGGAATGCTCAGGCCTACAATGGCCAGC TCGTGAGGCACTTGGCGGAAGGGAAGGGGACCCCATTGATGCCGAACCGGCGGTTCGAGGCGTATATCTTTGCTTTGTTC AATGAGAACCAGAAACCCGGTCCGATCGCGGAGCGCAATTGGGGTCTGTTCCGACCGGATTTCACTCCGGTCTATGAATC TGGAGTCTTGCGTAGTGGCCAGGTTTTGTTTCTTTAATTACCTCCTTCACACCGTTTAGTTATTTTTTAGTTTTCTAAAT TACATGATGTGCATTGTGCTGTCTTCAAATTGGTTACAAACATGGTACTTATAGACTTTGATACAAATGCAGTATGTTCT TCATTTGACAAATTAATCTTAATATGACTTGTAATAAATAGATTGATTAAAGATCGGTCGGTTTATATATTTCATCTCAA TCAGACGATGGATAATTTTTAAAATTCAAGCCCTGGATCTTGATTAAATGGTTTAGTTTTCCTTGATTGAGTGAATTTAG GAATTTCCTGGCTTTAGGCAACTCAAATTCCACTTGATTACAATTTTTAGAAACTAATTTGATAAGTGCAGAAACTAATT TGATTAGGATTATGTAAGTTAGGGAGAAGTTTGAATATCATTGTTGATTTTTAGATCCCTAATAGTATTAACAACTTGCA TACATATCAGATTTCAGTTTATCTCTATTCCTGTCAACATCATAGCATATATCATTTCTCTCTTTTTCCCCTCTTTTTTC ACTCATATTCTTTGGGTCTCAATATTCTGTTTGGGTGTCTATTTTTCTTTATTTGATCGTTTTGTCTATGTACTTTAATT TAATTTCCTTGGTTCTCTTGCTTTCCACTGCTTTATAAACAATCTGTTTGTCACTTTTCTCACATGGCCTCACCGAATAT ATGTATATAATACTAACAAACGGTCACAAGGTATCAAATCTCAATGCACTTTTTTCCTTCTTTTTTCAGAAATGTTGTTT AATTCATTGTTTAGTATGATAAGGTTTTATATTTGATGATTAGTTTACAAGCTTTAACTATTTGTCCATGTGCTAGAAAT TAAAATTTGCCTTATTTTAAAGATGATGTTCGAAATCGAAGTACCAAAACCAAACAATGGGTGGTTGAGGTGGGAGTGGT GTATGAGCCAACAATTGTTGATGTTGTTACTCCCTCACCTATTCCTGTGGGGATTTTCCTTCTAAAGATCAAATAAGGGG TGCGGTGTGCACAAGTTACGCTTTACCGTGACAACCTATTTCTAGCATGTTCGTATCAATTTCTCTTTTTTTCAGAGTCA ATTATGTGTAGCTTCTGCTATTGATTCTGGCTTTAGAATAAATTTTCGAAGGATTTCCAAACATGCATGAAGTAGTTTTA CAGTAAAGTTATTAACAAGCTTTTGAAATGAATGATGCAGAGACCAGCACCAGTAGGAGGAGGAGTTCCAAAACCTGCAG CAGGGGGACAAAAATGGTGTGTGCCCAAGGCAGATGCTAGCAATCAAGCTTTGCAAGCAAACATCAACTATGTTTGCAGC CAAAATGTTGATTGCAAGCCAATTCAACCAGGAGGAACTTGCTTTGCCCCCAATGATGTTAGGGCTCTTGCCACATATGC CATGAATGCTTACTACCAGGCCAATGGAAGACATGATTACAACTGTGATTTCTCTCACACTGCTGTCATTACCTCCACCA ATCCAAGTGAGTCTCTATACCAATCTAGAAAGAAAAATAAGAATTTATAGCATTTTAGCTGTGGCTGGGAGCCTCGTAAT CACTTTTAAGGAGTGTAGTTTGGTGCAAAGCGTAGCTTCTGAGTTCTGAAGTTTAGGCTGCCACGAATCCAAACACTCTA AAGTGTAGCTTCTGAGGTTACCGTGCTTTTTGGATTATCCGCCCACTACCAATCCAGACACAGATCTGACTTCCCCGCAG TCGCATTGTCTATATTCACTGTAGTCACGCCTTTGTAGGCATCTGATCAAGACCGGATAATTCAAGTTTGAAATATGATT TCAGATATATAATCAGGCTCTTTAAATCTAAGCCAAGCCATTTGATCTTAGATGGAGCCATGATGACTGCAAATCTGCAA TGACCGCAATAAATATAGGAGAATTCTACAACAGGAAATCTAAATTCATCCAAATGCCCACTATCAATTCATACATGGAT TCGGTTTCCCTTGAGTTGCCTTCTCATTGTAGTTACAGCTTAGTCGCCATCCAACCAAGATTAGACAATTCAATTTTAAA ATCCTACCAGACTAGACTCTTTTAGTACAAGTCATTATGGAGTTATGATGGCAGTGAATTTAGGAAAATCTTACCACAGA AAGCCACTAGATTTAATGAAACTTTTTACATCATATGGCTTGCAATGTAATTTCTTTTTTTGTTTGTTATTTTGCAGGCC ATGGTAATTGTAGAATCTGAGCTTGTTTCTTGAAGGTCCATAACCAGATCAGAGGCAAGAGAGGAAGATAGAGAAAAGCT CATTGCCATCTTATCTTTATTAGAAGGAGGGAAATGGTGTCAATGTGGCTGTGTTAATTAGTGACTTTGTGACTATGCAT TCATGTACTCAATTATTTAGTTTGTTGTATATCATGATCTTGAAAACAACCTTAAAATTGGCATGGCATTTCATGCTTGA TTAAATATATGATCCGGCGAGGGTTATTTGACAAATAGGGACATCATATTAACATTAACATGATAAGAATATCAACCTCA AGGGTCTACTTGACCATGACCATATTAACATTAAAAGAATATCAGCCTCAAGGGTCTACTTGACCATGACAGGGACAATC ATAGGTTTGAACCCCATTTATTTCATTTGGGGTGAAGGTTTTTTTTTTGGAATGCCAAATATATAAAAAAAATGTAAGTC TTTCTGTAAATGCTCTTTAGGACCGACAGTTTTCCTTGCTTTGCATCCTAAACTAATCCTCTCGAGCCTCAGAGATCTCA TTAAGTGAGTATATATCTTCAAACAAATCATTCTTCATATACATTGCCTAAAATCAAACCATTGATTAAATTTTTAAGGA GTCTAGCTCGAGTCTCAAAGAGTTAT
CDS sequence (LotjaGi1g1v0543700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCACCACCTCAACCTTCCTCCTCCTCTTGCTCCTCCACATCGCCGCCGCCACCACCACCGTCCACGCCATAGG AGTCAACTACGGCACCCTCGGCGACAACCTCCCTCCACCTGCCGCCGTGGCCAACTTCCTCAAGACAAGGACCACCATCG ACCGCGTCAAGATCTTCGATGTCAACCCGCAGATCCTCCAGGCTTTCGCCGGCACCGGCATCAGTGTTACTGTCACGGCG CCCAACGGTGACATTGCTGCGCTCAGAAACATTGATTCTGCTCGCCAATGGGTCGTCACCCACATCAAGCCGTTTCATCC TCAGACGAGAATCAACTATATCCTTGTTGGTAGCGAGGTTCTTCATTGGGGTGATACCAACATGATCCGTGGCCTTGTTC CTGCCATGAGAACGCTATACTCTGCTCTTCAAGCAGAGGGTATCAGAGACATTAAGGTTACCACTGCTCATTCTCTGGCA ATAATGCGTTCATCTTTGCCACCAAGTGCGGGTAGGTTCAGACCTGGGTTCGCAAAGCACGTGTTGGGTCCTATGCTGAA GTTTCTGAAGGAAACCAGAACACCCTTCATGGTGAACCCTTACCCTTACTTCGGGTACAACCCCAAAAACGTGAACTTCG CACTTTTCCGGCCGAACCGGGGTTTGTTCGACCGGTACACCAAGTTGAGGTACTCAAACCAGTTTGATGCTCTTATGGAC GCGGTTTACTCGGCCATGAAGGCTCTAGGGTATGGTGACGTGGACATTGCCATCGGTGAGACCGGGTGGCCCTCCGTGTG CGACGGCTGGGATGCCTGCAGTGTGGGGAATGCTCAGGCCTACAATGGCCAGCTCGTGAGGCACTTGGCGGAAGGGAAGG GGACCCCATTGATGCCGAACCGGCGGTTCGAGGCGTATATCTTTGCTTTGTTCAATGAGAACCAGAAACCCGGTCCGATC GCGGAGCGCAATTGGGGTCTGTTCCGACCGGATTTCACTCCGGTCTATGAATCTGGAGTCTTGCGTAGTGGCCAGAGACC AGCACCAGTAGGAGGAGGAGTTCCAAAACCTGCAGCAGGGGGACAAAAATGGTGTGTGCCCAAGGCAGATGCTAGCAATC AAGCTTTGCAAGCAAACATCAACTATGTTTGCAGCCAAAATGTTGATTGCAAGCCAATTCAACCAGGAGGAACTTGCTTT GCCCCCAATGATGTTAGGGCTCTTGCCACATATGCCATGAATGCTTACTACCAGGCCAATGGAAGACATGATTACAACTG TGATTTCTCTCACACTGCTGTCATTACCTCCACCAATCCAAGCCATGGTAATTGTAGAATCTGA
Protein sequence (LotjaGi1g1v0543700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTTSTFLLLLLLHIAAATTTVHAIGVNYGTLGDNLPPPAAVANFLKTRTTIDRVKIFDVNPQILQAFAGTGISVTVTA PNGDIAALRNIDSARQWVVTHIKPFHPQTRINYILVGSEVLHWGDTNMIRGLVPAMRTLYSALQAEGIRDIKVTTAHSLA IMRSSLPPSAGRFRPGFAKHVLGPMLKFLKETRTPFMVNPYPYFGYNPKNVNFALFRPNRGLFDRYTKLRYSNQFDALMD AVYSAMKALGYGDVDIAIGETGWPSVCDGWDACSVGNAQAYNGQLVRHLAEGKGTPLMPNRRFEAYIFALFNENQKPGPI AERNWGLFRPDFTPVYESGVLRSGQRPAPVGGGVPKPAAGGQKWCVPKADASNQALQANINYVCSQNVDCKPIQPGGTCF APNDVRALATYAMNAYYQANGRHDYNCDFSHTAVITSTNPSHGNCRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 8 | 442 | 435 | 1.1E-214 | – | |
| PANTHER | 8 | 442 | 435 | 1.1E-214 | – | |
| Phobius | 19 | 25 | 7 | - | – | |
| Gene3D | 24 | 345 | 322 | 5.4E-119 | – | |
| Pfam | 26 | 337 | 312 | 7.6E-81 | ||
| Phobius | 26 | 447 | 422 | - | – | |
| SUPERFAMILY | 26 | 337 | 312 | 2.72E-82 | ||
| Gene3D | 361 | 446 | 86 | 6.6E-5 | – | |
| Pfam | 363 | 433 | 71 | 4.6E-21 | ||
| SMART | 363 | 447 | 85 | 5.1E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0543700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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