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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0544900 |
| Transcript ID | LotjaGi1g1v0544900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT4G02970.1 7SL RNA1; Swiss-Prot: sp|A0M579|RL15_GRAFK 50S ribosomal protein L15; TrEMBL-Plants: tr|I1N584|I1N584_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0544900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107426736..107429535) extracted from Lotus japonicus Gifu genome v1.2.
GTATATCTTGACTTGACCCCTAAAACACCTTTTCTCTCATGTCGTTACAAGAGACTAGCTAATTAAAGAAAGACTATAAG GCCAACAAATCCACAAATAATCTGATATATATATTCAAGGTATAGCAACACTTTTAGGAGAACCCTTCATTCTCTCTATT GTTGTTTCAATACTTAGTGATAGTCATTCAATAACTAACGGTGTAAAAGTGATCACATGGCTGCTTCTTTGCCTTCTTTC TTCTCTGTCAAAGCAAGAGGACCATATATCTCAAGAGATGCAATATCTCTTAAGAAATGCAAGATACGTCATGGGATGCA AGTAATAAAAGTTCAGAACTATCAAGATGAAGGTGACTATATAATATTGAAGATCTCCTGTCTCATTTTCTGTCATAATT TTCTGTTTGGCCAGTGAAATTTTGACTTTTCACATAAAAATAGAATATACGAGTGAGGCAGTTATAAGTTAATATGATAC TTTTTAATTGATATGACAAAAATTTATTGCTGGGACAAGAAATGAGGAATTTTGATACAATATCCCTGAGTACTCATTCA AAATGTTAATAATATTTACAATACATATGATTGGAAGTTGGAACCTTTTATTTTCTTCTTCTTTATGATTGGAGTGATTG ATTATTATTAATCAACAGGGAGATCCACCAACATGGTAGATGCAAATATGAATGTTCTAAGGGGGAGAATGGAGATGGTG AAGGTGAAGGAGAGATTGGAAAGGTGTTGCAAATGTCATCATGGCTGGAATTATGTCCAAGTTTCTGATCACAAAACTAA GAAAAATAAAGAGTTTAGCAGCTTGATTGAGTTGGCAGGTTTAGTTTGTGGGACGTTTGGTCTTACTTGTTTTGGTGGAA CACTCTGCCTTTGTCTTGTTTCCCTGCTTGTTCATCTGCAATTGTGATTTGGAGTCTTATACGTTCACAAGGATCACTTA TAGTTCTATATATTTTCTCTCACTTCTATTTATATTTGTCTCGGTGTGTTGTTTGATTTCATTTAGGGGTGTGAAATAGA TTTTTATTGATCATGATTTAGAAAGTTAATTAATGATGCCTATTTTGCATTTCTCAGTTGCATAGAACTCAACAATTTTT TTTCTTCACAGCTCAATCTTAAGTAATTAACATTTCTCGTAACATAGTTTCTTCTGAAAAACAAAAAATAGTAAAGCAAC TGAGAATGGTGATTTAGTTTCCTTTGTACATGTTAAATTATAAGCATTTGAAATGAAGGATATCACAACTTTTTCCTTAA AAGGTTGCACAAGAAGGAGCTGACCTGTTATAATAGATTCCCTTTTGGTTAAGATTTTTTTTAAAATTATTATAGTTTGG CTCAAATCTAGGTTAAATTATATTAGAGTCGTTACCCCAAATTCTTCCACTACCTATCCCTTCCTCCACCTCCTCCACAC CATCCTCCTTATCGCCAACCTCCTTGCCCTCTATCACAACCACCACCACCACTAGTTCTTCTCTTCCCTCCCCCACTGAT CACCAGCCCGCCATCCCACCAACAAAACAAAGACCTCGTAGCATTAGTCCATCTGAAGAAGCATCGGCAGTGGTCATCGA ACCCACACGTGCAACGTAAACATAATGATATGGTAGAATACACCCAAATCTCATCACCGACCCTATTATCATCTCAACCT CCAAAACCCTACTCTCCTAGATCTCATCATCACCCCCAAATCATTTATTGCAGTTTTACTCATGGTTTATCCTTGCCCCG CTTCTTCATAAGATTCAGTGACACAATTTTCAATGGGCCAACAGTGAGCCACTGGGATTCCGTCCCACCGATGAGAGTAG CGAAACACAAGCGATTGTGTATAATATTATATTTAGAGAACATTGATGTTTTGTTTTAGTTGGTGGTTGAGGAAATTTAT ACCTTAATAGTAGCAATTCCTCTTTTCTTCTTCTCACTCTGTTACATTTTTGAGTTTTGACACACCGTGACTCTACTTGT GCTTGGTGCTAATAGCAAACTACAAACCAAACCCAAAAAAATTGATCAATGCTTCTGTTAGGAGAGACAGGGGAGTTCAT GGGCCGAGGAGCAAGACACCAAGAGATATCGATGTCACATCTTAACCCAAAACCTTAAGGCATTAGGTTTATAGGTCACA TCTCTTATAAAGTCTTCTCCTCACCCATACTTAACCAATGTGAGACTCCAACTCCGCACTTGAATTCTCAACAATATCTC CCTCAAGTGCGAGTCACCACCACATTATCATGGCCCCCCTCAGCGGAAGCTTCCACCTTGTACCGCCGTTCGCTGCCTAC AGAACCTGCCGCCTAGCCACACTACTAGGAAGACTTTCGACACAAGGAGCTGTTACCATGTTCCCACGAACCATCGACTC TGATACCACTTGTTGGGGGGAGCCAGGGGAGCCCATGGGCCGAGGGGCAAGACACCAAGAGATATCGACATCACATCTTA ACCAATGCGGGACTCCAACTCCGCACTTGATTTCTCAACAGCTTCTGACCATAGAGATATATGTATTTTGATGGCTTTGT GTCTGAACAGAAAATGAAGGTTTTACTCTTTTTCTAATTTGTTGCACATGAGGAGATTTGGTTCGAAGATTTGTGTTATG CAATCTGGACTGTTTTATTAGCACTATGTGACGAAGGAGGAGGGACTGGCGGTGGTTGCGGTGGAGGGTGAAGAGGTTGA GGGGAGGGTGGTGAAGAGGATGTAGAGAAAAGGGGTGGTGATCAATGAGGAGGAAGGAGAAGATCTAGTGGTAGTGGTGG
CDS sequence (LotjaGi1g1v0544900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTTCTTTGCCTTCTTTCTTCTCTGTCAAAGCAAGAGGACCATATATCTCAAGAGATGCAATATCTCTTAAGAA ATGCAAGATACGTCATGGGATGCAAGTAATAAAAGTTCAGAACTATCAAGATGAAGGGAGATCCACCAACATGGTAGATG CAAATATGAATGTTCTAAGGGGGAGAATGGAGATGGTGAAGGTGAAGGAGAGATTGGAAAGGTGTTGCAAATGTCATCAT GGCTGGAATTATGTCCAAGTTTCTGATCACAAAACTAAGAAAAATAAAGAGTTTAGCAGCTTGATTGAGTTGGCAGGTTT AGTTTGTGGGACGTTTGGTCTTACTTGTTTTGGTGGAACACTCTGCCTTTGTCTTGTTTCCCTGCTTGTTCATCTGCAAT TGTGA
Protein sequence (LotjaGi1g1v0544900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASLPSFFSVKARGPYISRDAISLKKCKIRHGMQVIKVQNYQDEGRSTNMVDANMNVLRGRMEMVKVKERLERCCKCHH GWNYVQVSDHKTKKNKEFSSLIELAGLVCGTFGLTCFGGTLCLCLVSLLVHLQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 100 | 100 | - | – | |
| PANTHER | 1 | 133 | 133 | 7.2E-52 | – | |
| PANTHER | 1 | 133 | 133 | 7.2E-52 | – | |
| Phobius | 101 | 130 | 30 | - | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 131 | 134 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0544900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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