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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0547900 |
| Transcript ID | LotjaGi1g1v0547900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphopantothenoylcysteine decarboxylase; TAIR: AT3G18030.1 HAL3-like protein A; Swiss-Prot: sp|Q9SWE5|HAL3A_ARATH Phosphopantothenoylcysteine decarboxylase; TrEMBL-Plants: tr|G7LCR5|G7LCR5_MEDTR Phosphopantothenoylcysteine decarboxylase; Found in the gene: LotjaGi1g1v0547900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107787896..107789497) extracted from Lotus japonicus Gifu genome v1.2.
GCGGCTTTGTCGGAACCCGTAGGTGCAGAAGGAGAAGCTATGTCAGTGGATGCTGCTGCCCCGAGGAAGCCTCGGATCCT GCTTGCTGCTAGTGGGAGTGTTGCTGCTCTCAAATTTGCAAATCTGTGTCATTGTTTCTCTGAATGGGCTGAAGTAAGAG CAGTGGCTACCAAATCTTCTTTGCATTTTATTGACAGGACAGCGATTCCCAAGGATGTGATTTTATATACAGATGAGGAT GAGTGGTCTAGTTGGAAGAAACTAGGCGATAGCGTGCTTCACATTGAGCTTCGTAGATGGGCTGATATCATGGTCATTGC TCCTTTATCAGCTAACACTCTTGGAAAGGTAATTAAGTTAATAAATGTCGGCTAATCTTGTCTATTCTACATAGTGACAC GATAAAATAATTAATCATATCACATTATCTCTTCACATTAAATTAAGCAAGCTAGCTTCTCTATGAAAATTACTTGTCTA CCCCGGTCATAGTAAAAGCATGGTAATCAAAATTGCGATTTATATCGCTAAATCACAGGATTTTGCGATTCAAGAGCACA CTGCGATTTAAACCCCAGCTAAATCGCATTCTGGGTAAATCGGTGCATCGCACCCGAACTCCCTAAATCGCTGCCAAACT GCTGCTAAGTCGCACCCTAGCTACCTAAATTGGCTGTTTGCTCTGTCCTAGTTTTCTGTTCCCTGTTTTTTTCTCTCTTC TCTAGGTTATCTGCTAAATCTTACGATTAATCTTATGATTTAGGGATTTACGATCTACAACCCCCTCCCCGATTTAAGTC AAAATCCTGATTTTGTCTACTATGGTTGAAAGTGACTTTTTGAACCCTTAGGCAGATAGTTCGATCATTAGGGGGGGCGC ACTCTTGGGGGGGGACCTTTGGCCTGTGTGAACAATTTAGTACACAAAAAAATAATGAAGTTACCCGTCTCTATAGTTTG AACAATTTCATGTGCTGATCTGTGTTCATGTTCATCATATGATGGCCAATTTTTGTGCACATCTTATTTAGGCTTTGCAT GCATGTTTCTATTAAAGTACTTAGCTGAGGTTGTTGCAATTGCCACTTTCTCCTTTTTATTAAATGAAATATGGATCTAA TGTATATACGCTGACCTCCAATTGTTGTTTTCCACGTCAGAAACTAATTTTTAAATTTAATTAAAATGATAAATCATGTA ATTGTTTAAGCAGAGGTGGCCTGAAATGATTGGATGTCAGTAAAAAGAATTTTTACACTGACAGTGCATGAATACTAAAT CATTAAATATATGCTTTTATAGATTGCTGGAGGGCTGTGTGACAATCTACTGACTTGTATTGTGCGAGCTTGGGACTACA GCAAGCCATTCTTTGTTGCACCAGCCATGAACACTTTAATGTGGAATAATCCTTTCACAGAGAGGCATCTTATTTCCACT GATGAGCTTGGGATTTGTCTCATTCCCCCTGTTGCAAAGAGATTAGCTTGTGGGGATTACGGCAATGGCGCGATGGCCGA ACCTTCCACCATTTACTCGACTGTTAGACTGTTTTATGAGTCAAAGTCTGTGCAGGGTAATGGTGATGTTTAACAATTTT GA
CDS sequence (LotjaGi1g1v0547900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGTGGATGCTGCTGCCCCGAGGAAGCCTCGGATCCTGCTTGCTGCTAGTGGGAGTGTTGCTGCTCTCAAATTTGC AAATCTGTGTCATTGTTTCTCTGAATGGGCTGAAGTAAGAGCAGTGGCTACCAAATCTTCTTTGCATTTTATTGACAGGA CAGCGATTCCCAAGGATGTGATTTTATATACAGATGAGGATGAGTGGTCTAGTTGGAAGAAACTAGGCGATAGCGTGCTT CACATTGAGCTTCGTAGATGGGCTGATATCATGGTCATTGCTCCTTTATCAGCTAACACTCTTGGAAAGATTGCTGGAGG GCTGTGTGACAATCTACTGACTTGTATTGTGCGAGCTTGGGACTACAGCAAGCCATTCTTTGTTGCACCAGCCATGAACA CTTTAATGTGGAATAATCCTTTCACAGAGAGGCATCTTATTTCCACTGATGAGCTTGGGATTTGTCTCATTCCCCCTGTT GCAAAGAGATTAGCTTGTGGGGATTACGGCAATGGCGCGATGGCCGAACCTTCCACCATTTACTCGACTGTTAGACTGTT TTATGAGTCAAAGTCTGTGCAGGGTAATGGTGATGTTTAA
Protein sequence (LotjaGi1g1v0547900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVDAAAPRKPRILLAASGSVAALKFANLCHCFSEWAEVRAVATKSSLHFIDRTAIPKDVILYTDEDEWSSWKKLGDSVL HIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPFFVAPAMNTLMWNNPFTERHLISTDELGICLIPPV AKRLACGDYGNGAMAEPSTIYSTVRLFYESKSVQGNGDV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 32 | 32 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| PANTHER | 4 | 192 | 189 | 5.0E-101 | – | |
| PANTHER | 4 | 192 | 189 | 5.0E-101 | – | |
| SUPERFAMILY | 10 | 187 | 178 | 3.79E-55 | ||
| Gene3D | 10 | 198 | 189 | 4.6E-80 | ||
| Pfam | 12 | 184 | 173 | 3.7E-46 | ||
| Phobius | 13 | 24 | 12 | - | – | |
| Phobius | 25 | 32 | 8 | - | – | |
| Phobius | 33 | 199 | 167 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi1g1v0547900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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