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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0548900 |
| Transcript ID | LotjaGi1g1v0548900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT2G43370.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8VY74|U1135_ARATH U11/U12 small nuclear ribonucleoprotein 35 kDa protein; TrEMBL-Plants: tr|I1KZM1|I1KZM1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0548900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107872840..107877672) extracted from Lotus japonicus Gifu genome v1.2.
TATTGAGTTAGATAAAACTTATTGAAATGAAATATATAATATATAAAAATCAACCATTGTTGCAGAAAAAACTCATGGAA TGAGATACAAAAAAAATAAAAAAGAAGTTATTATGAAGACAAAATAGGATTGTTTTTGAAGAGTACAGAAAGAGCAAACA TAGGTAGAGAGTGAAGAGTGAAGAGCAATGAGTTTGAGGGCCAAAAACTTGAACTGTGTTTTCTATGCGGATTCCTACCA CCCCATTCAAGCTGGCAGCATCGACGGCACCGATATTGTTCCTCACGACAATGCCATCTATCGTGCTCAACTCTGTTCCT CTATTGGCCTCTGTATGTCTTTTTCTGTTTCTCCCTTTCAAAATTTTCAATTTTTCTTTGATTTTGAGTTTCAAAATTGA ATTTTGCAGATGACCCATTTGGTGATCCTAAATCCATTGGAGACCCTTATTGCACTCTCTTCGTGGGTCGCCTCTCTCCT CTCACTACTGAAGATACTATCCGCAAGGTAAAAAGGTTCTCTTTTTCTTTTTTTCTTTTTGTTTTTCAATTTTTTTTTCT CTTCTGGGTGCTTCTTGTATGTTAGAATATGATAGATACAAATGTGTAAAAAAAACTGTTCCATATGTATGTGTAATGAA TATACAGCTTATGAGTTGAAGAGCAGCATCTGAAACTCAATTAAGTTCCTTGAAGCTTAGGGGCTAGGGCACATTTTTGC TGCTTCATTTTTTATAGCATAATCAATTTCTCTATTTTCTTAATTTGTATGTTTATGCTTATGGAATGTGTGGTTTTTTT CTTTCAGGTTATGAGCAAGTATGGTAGGGTGAAGAACTTGCGGTTGGTCAGGGACATTGGTAATATTCTTTCGTCTATCT TAGTTCGTAACCCCGTCTTTAATTATTATTATTGTTGTTTTTTGCATCTTTAAATTGGGTGCTTCTGATAAACATCTAAA AGAAGTTATATTTCTGATTGAGCTTGGAGGTCAATATGATCGAATACTTGCTGATTGCTTTCTTGTGTAATGCTCTGAAT TTGAATGTGTTGTCTAAAACTAATATTTTAGGTTCAAGAATATGTTTTCTTGTATTTAGTCCATCTTAAGAACTATGAAT ATGTAAAACTCTCAAGAATCAAGATATCGCTCCTTTTTATTTTGTATTGTTTCTCTAGTATAATTTGTTTTCCATTTCTG TTAACTTAATTGTTTCTTTTATTAATTTGGTTTATGGTATGCCCACATACTTGAAAAGGATCCTAATTCCCTATTAACTG TCTATCAATGTTCACTTACCAGCTTCTGTAGCATTCCCATTGGGTTATTTGTACAGGATCTTGTATAGTCATGCTTTTAT GTTAAGCTTCTGTAGCATTCCCATTTGATCTGTTGAATGATATATGTTGGTAGTTACCCATTAACATTTATTATTTTCAA CCTGTGGGATTTAAATCTTTATGTCGAATTTGCAGTGACCGGAGCTTCTTGTGGTTATGCTTTCGTTGAATTTGAGAAAG ACAGGGAGATGCGACGGGCATATATGGTGCGGCAACATGTTAAAACATTGTTTTAGTTTGTAGCTTAAAATAACAAAGCT TTATTGCATGACAAATTAAAACCCTGTCAGGCCTCATTATACATGTATCTACACGCATCCATACACACAAGTCATGTTCA AATTATTGAATTGTGAGAAAACCCAGCTGATTTTACAGATAAAGTAGCAAATGAAATCATCTGAACTTTAGCTGGCTTGT TGTACCGTGCCTTTTTTGAAATGTTAATATTACTGATGCTCATTGAACTTTCTCATTTGCAGGATGCTCATCATTTGATT GTTGACGATTGTGAAATCATAGTTGATTACAACAGACAGCGATTGATGCCCGGATGGATTCCCAGAAGGTTAGGTTAGTT GAAGCGGCTCATTCTTGATATTGCATTTGTACTCTTTGAGTCAGAGCCGTCTGATTACTCTGTTCTCTCCTACAGGTGGT GGTCTTAGTGGTAAGAAGGAATCAGGACAACTTCGTTTTGGGGGAAGAGAAAAACCGTTTCGCGCACCCTTGTACATATC AGTCCTCTTATATCTGTTAATTATATATTTCGTTCTTTATGAAAAAACTTATTACCTAGTTTTGAATGACGTGTGTTTAC TTCTAGCGTGTTAATTTCGAAATGAATATTGAGTCATTATTTTAGTTATTTGATTATTAGAGTAAAATTATATTGACATT ACATGAAATTTGTCTAAATTGTAACAAGCTGTTTTTTTGCATCTCTCACTTGAACTGAAGGCTGTAAGAGTGGGAGTATG TAGGCTAAAATGTTAGTGGGGCCGATCTCACCTAGTGAGATATGGTTTGGTTGTTTTTATTATCACTATTTTTTAAGGGA AATTCAAAGGACTGCAGGTCAATGTAATTTTTGAAACAAGAGAAGTGATTGTAATTTAGCCAAACCTCAAGGGCCAGTGT TATTCACTCATTATATACTAATTTAAATGCATAAGCTATTGTATTACCATGTAGCTGACAATTGGTTTCATTCGGTTTTA TATTACTGTATATGGTGCTCTGATAAGTACTCTGAATGTGAAAGCGGCGCCATTTCTTATAGTCTCTAATGTAAATATAG AAGTGCCCTTGAAATTTGGTTATATGTGGACATCAATATCCCAATTGATGTTCATTTTTTATTTTGTTCTTGGACTAGTT GGTCTAAAATGACTAGTGATTCAAATATAAAAAGACTGGAAGATAAGGAGATTGAGAGTGAAATTGGGGAAGCAATGAGG CAAATGATTTATGTGACTACGAGTACGACAGGTGTACTGAAAGTTATAGCACCACAAGATGATTGAGCGTCTCTATGTGG TGGAAGCTATGATTCTCAAGACTGATAAATCCTACTTGTATTCTTCATTGGATAAGTTTTGGGAGAAGGTTTAAAGCTAG TTATAACATGTTTGGTTTCACAATTTGCACACAATTAAATTTACATTTACTCAGAAGTTAAGACTTGTAAATTTCAACCA GAATCGATTGTGGAGCATTTCACCGTGGAACCAAGCATGTTATTAGTGCATTGCTGATTGCACACAAAAACATGACATAT CTCCCTTTACTGTTTAGCTTGATTCTATTGTCTGCTTTATGACACTTGCTTGAATTTGACCCAACCCTTAGCTTCTTTTC ACTGACTTGTGAGCTATGGATTTATTTAATTTTGTATTTTCTTAACTATTTAACCAGGAAACCAATTCCATATGAGGAAT TGAAGAAGCTTGGCATCCCACCTCCACCTGAGGGAAGATACATGTCACGCTTTCAGGTTGTTATTTTGTCTCTTGACTTT GGAGCATTCCTATTTAGAGCAGGTGTTTTATAATCTCATGTGTAAAAACATTTTATCCATTTGGAATATTTTAAGATATT AAACAACATGTGAAACTCCGCGTCTGCTGTGTCATATCCGCTCCTAAGCCTGGATAAAAGAGAAAAGTTGTGTAGGCCTG CGGCAACCAACATAAAACTGGTTGTATCTTTAATATGGATTAAGTGATTCATATAGCCGACTTCACTTAGTGGGATAAAA CTTTTGTTGTTGTTGTTTATTAAACAACATATGCACTTGTATTTGGTCTAATATTGTTCATTGTGGGTCTGGTCATGGCA CATTATTTCTCATTGCTTGTTTGGTGTTGCTTTTGATAACTCAAGTTTTAGTAGAAGTTAGTGTTTTAAACCAAAACTTT GAACTTTACAATGCTCTTGTTAATGTCTTTTACTTTTTAATGCATTTGCACAGGTCCCATCCCCTCCTAGAAGAGAAAAG AGCCTTTTAGATAGGGAAGAAGAGTCTCATAGAAGGGGTTCTAATGACAGGAGCTCAGTGGACATGGATGAAGGGCACTA CAAAAGGAGTTCAAGTCGCCGGGAAGACCACTCACGTGGAAGGAGCTCTTCAGAGAGGAGTGACCGTTACCATGACCGGA GTTCAGCTGAGAGAGAACACCGGCATAGGAGCTCTTCGGAGAGGAGTGACCGTTACCATGACCGGAGTTCAGGTGAGAGA GAACACCAGTATAGGAGTTCTACTGATGAGAAACGTTCTCATAGAAGAAAGGAAAGAGATGAAAACTCTCGGAGGAAACA TGGATACACTAGTTCTTCTGAATCTGATGAGAAACATTCACGCAAAAGAAAGGAAAGAGATGATGATCACTCTCGGAGGC GAGAAAGATATAGTCGCTATTCTCCTCATGAGGATTAAGGTCTACAACACTACTAGTGCATTTGGATTGATGGTGGACAC ACAATTCAAAACATGGTAATTCCAGAAACTATACTTTGTGGCTTCTCTAAAGAAAGGATTATGGGGTTTCCAACTGCATA ACCTAACACACTATACAACTCATTATCACTCTACTATTTAGCTTTTCTACTTTGTGTACTTATATACTATATCATATACA AGGTAGAAACGGGAATGCTTAGTGAGGTCCAGGGATCATCATTTAGTGATAAACATGAGACTGGTGCATGATATGCAAGT CCATGCACAGGCTGAATGATGATCATTTTCTGGTTCTTATTTTTATTGGGGGTATAATCGACCGATATTTTTAATATAGA TCCGTGATCCATATAGCCGATTTCACTAGGTTGGATAAAACTTTTGTTTGTTTATTTACTTGTTATGCAAGAGCACTCAA TCTAATACCAGTGATCTATGATTGAATTGGTATGTATCATAACATCAATTCTCAATAGTAAATTATCTTTTTCGAGTATG ATTTGTTTTTTCCCTGAGGTGATACATTTACAG
CDS sequence (LotjaGi1g1v0548900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTGAGGGCCAAAAACTTGAACTGTGTTTTCTATGCGGATTCCTACCACCCCATTCAAGCTGGCAGCATCGACGG CACCGATATTGTTCCTCACGACAATGCCATCTATCGTGCTCAACTCTGTTCCTCTATTGGCCTCTATGACCCATTTGGTG ATCCTAAATCCATTGGAGACCCTTATTGCACTCTCTTCGTGGGTCGCCTCTCTCCTCTCACTACTGAAGATACTATCCGC AAGGTTATGAGCAAGTATGGTAGGGTGAAGAACTTGCGGTTGGTCAGGGACATTGTGACCGGAGCTTCTTGTGGTTATGC TTTCGTTGAATTTGAGAAAGACAGGGAGATGCGACGGGCATATATGGATGCTCATCATTTGATTGTTGACGATTGTGAAA TCATAGTTGATTACAACAGACAGCGATTGATGCCCGGATGGATTCCCAGAAGGTTAGGTGGTGGTCTTAGTGGTAAGAAG GAATCAGGACAACTTCGTTTTGGGGGAAGAGAAAAACCGTTTCGCGCACCCTTGAAACCAATTCCATATGAGGAATTGAA GAAGCTTGGCATCCCACCTCCACCTGAGGGAAGATACATGTCACGCTTTCAGGTCCCATCCCCTCCTAGAAGAGAAAAGA GCCTTTTAGATAGGGAAGAAGAGTCTCATAGAAGGGGTTCTAATGACAGGAGCTCAGTGGACATGGATGAAGGGCACTAC AAAAGGAGTTCAAGTCGCCGGGAAGACCACTCACGTGGAAGGAGCTCTTCAGAGAGGAGTGACCGTTACCATGACCGGAG TTCAGCTGAGAGAGAACACCGGCATAGGAGCTCTTCGGAGAGGAGTGACCGTTACCATGACCGGAGTTCAGGTGAGAGAG AACACCAGTATAGGAGTTCTACTGATGAGAAACGTTCTCATAGAAGAAAGGAAAGAGATGAAAACTCTCGGAGGAAACAT GGATACACTAGTTCTTCTGAATCTGATGAGAAACATTCACGCAAAAGAAAGGAAAGAGATGATGATCACTCTCGGAGGCG AGAAAGATATAGTCGCTATTCTCCTCATGAGGATTAA
Protein sequence (LotjaGi1g1v0548900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLRAKNLNCVFYADSYHPIQAGSIDGTDIVPHDNAIYRAQLCSSIGLYDPFGDPKSIGDPYCTLFVGRLSPLTTEDTIR KVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGWIPRRLGGGLSGKK ESGQLRFGGREKPFRAPLKPIPYEELKKLGIPPPPEGRYMSRFQVPSPPRREKSLLDREEESHRRGSNDRSSVDMDEGHY KRSSSRREDHSRGRSSSERSDRYHDRSSAEREHRHRSSSERSDRYHDRSSGEREHQYRSSTDEKRSHRRKERDENSRRKH GYTSSSESDEKHSRKRKERDDDHSRRRERYSRYSPHED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 339 | 335 | 9.0E-141 | – | |
| PANTHER | 5 | 339 | 335 | 9.0E-141 | – | |
| SUPERFAMILY | 50 | 169 | 120 | 4.97E-26 | ||
| Gene3D | 50 | 171 | 122 | 4.7E-27 | ||
| CDD | 60 | 152 | 93 | 1.34604E-53 | ||
| ProSiteProfiles | 63 | 141 | 79 | 15.699 | ||
| SMART | 64 | 137 | 74 | 2.0E-19 | ||
| Pfam | 65 | 134 | 70 | 4.8E-16 | ||
| MobiDBLite | 158 | 358 | 201 | - | – | |
| MobiDBLite | 211 | 358 | 148 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0548900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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