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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0549300 |
| Transcript ID | LotjaGi1g1v0549300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Charged multivesicular body protein 1; TAIR: AT1G17730.1 vacuolar protein sorting 46.1; Swiss-Prot: sp|Q8LE58|CHM1A_ARATH ESCRT-related protein CHMP1A; TrEMBL-Plants: tr|I1M5E2|I1M5E2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0549300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:107930865..107933639) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTTTTCACTTTTTAGTTTTAGTCCCATAAAATAGGAAAATCAAATTTCTAATTCCCCACTCTCTCTCTCTCTCAGA AATTCCCAAATCAATCAAACACGAACGAACCCTAACAGGAAGAAGAAGAAGAAGAAGAAGGAATCGAAGATCAAACACAA TGGGAGGAAGCACAGAGAAGCTGATGAACCAGATCATGGAACTCAAATTCACCTCCAAATCACTTCAACGCCAAGCTCGA AAATGCGAGAAGGAGGAGAAATCCGAGAAGCTCAAGGTCAAGAAAGCCATCGAGAAAGGCAACATGGACGGCGCACGCAT CTACGCCGAGAACGCCATCCGCAAACGCACCGAGCAGATGAACTACCTCCGCCTCTCTTCCCGCCTCGACGCCGTCGTCG CCCGCCTCGACACCCAGGCCAAGATGACCACCATCAGCAAGTCCATGGGGAACATTGTCAAGTCTCTTGAGTCCTCCCTC GCTACTGGCAACCTCCAGAAGATGTCGGAGACCATGGATAGCTTTGAGAAGCAGTTTGTTAACATGGAGGTTCAGGCTGA GTTCATGGAGTCTGCTATGGCTGGTTCCACCTCTCTTTCAACGCCTGAGGGGGAGGTTAACAGTCTTATGCAGCAGGTCG CGGATGATTACGGCCTCGAGGTATCGGTCGGTCTCCCTCAGCCCGCTGCACACGCGGTTCCGGCTAAGGAAGCTGACAAG GTTGATGAGGATGATCTTACCAGACGGCTCGCGGAGCTCAAGGCTAGAGGTTAATTCGTGTTTGGTACTTTCATGATCAA TACTGCAGATAAATTATTACAAAGTGTAGCTTTTGAAGCTACAATGGTTTGAATTGTGTGTTTATACCACCAATTCAAAC ACACTATAAGATAGATGCTGTGTTATAAATTACTTATATTTCTATTTTGGGATTGTTAACTTGTTGAGGAATGATTTGTG TATATTGAACTGAATTTGAATTTGATTGGCTGGCTGGCTGACTCCATGATATTGTCATGTGTGAAGACTTTGCTCGGTCG AATTTCTGTGCCCTCCCTGTTATATTTAAGACATTTGATTGCTTGATTCCAATCTTGACTAGCTCTGTGGCCTTTGATCT GTGAGAATGGTGAGTAGAATGGGATCAAAGATAATACAATGCTTTTATCTGTGCTTGTCTTGTGTGTCTTTGATCAATGG CAGCAAGATACTATTGTGTATATTGAACTGAATTTGACTAGAGGTTAATGTTAATGTCGCTAAAATATATTGCCCTTTGG ATAGATGCAGTGTTATACTACTTTTATTACTATTGTGTTGTGTTAAGTTGTTTAAGAGTGATTTGTGCATAATGTTGAAC TGAATTTGACAGGCAGGCTCCAATATTGGGAGATATTGTCAAGTATATAGACTTTGCTTGGTGGGGTTTTTGTGCCCTTC CCATTATGTTTAACTTGTTTGGTTGCTTGTTTCTTATGTATTTATTTTGACTGTCTCTGTAATGAACCTGTATAGTATGC CACCCTTTTGGCACAGGAAATCCTAGTGCTTACTGCTTACTGAAAAAATTAAGGACTTTGATATGTGGGAATGCTGAGTA GAATGGAATAGAAGATAATAGAATGCTATTTATCTATTCTTTATTGTCTCTGAGGAATGCCAACACGGCCTAGTAATTCT CTTTGGAGTAATGCAGGGTATGAATTCATCAGAATTGGAGAGAGGAGTGCCGATATCAGTAATTAATTATAGGCCCTTTT ATGATTATTTTCTTATTTTCCCCCTAAAAATTATAATCAAGTTGTCTCATAAATGGATTGCTTATTTGAGAATGTTTTGA GTTTTTAGGGAAGAAACCAATCAGGAGAAGTGTGTTTTTAAGATTGTATGACAAAGAGTGTGTTAGTATCATTTCTCTGT CTCGGAATGATGACCTCTTATCCACCCCTGCTGATGAAATTCAAGGAGGAGGGTTGAAGCTGGGTAATGCATTTAAATGA TAACACAGTGATTATGTGTTGAGAGTTGAGACTGTTTTCTGATACTTTGCTTTTTTTTTTCTTCAGTGGAGTAATGAATT TTTCATTGGTTTTAAATTTGATTCATAATCAACATAAACTGGTTTCTTATTATCATATAATCATGTCAATTTTAAGGAGT TTGTCCTTCTGTAAATTACTGAACTAGATAGGGTATCTTCAAGTAAGCAGTGCCAGTATATACATTTCTCCAGTTCTGTT TAGAAATGATTGTAACCCCATGAGACTCCAGGAACAATTGATTTACAGTTGATAATAGAAAAGAATATGGAAAGAAATAA GATTACGCTTGGAAATCCATCTAGAGTTGATTCTGAAGCCAAGAGAGAAGCTTCTATGAGTAGCTTCTGGGTTTCAAAAT TGATTGTGGTGAAAGGGAAGCTAATCCAAATATTCTAAGGCTTGGAAAGCACATTCTTGATCAATATTGAATTCCATTTC AAAGTTGTCTTTCAGTTTCATAACAGTTCTGCGGGGAATTGTGAATATTTGATGTTTGACAGTTCTTACAGTCAACGGCG TTCTCATTATTTTGATATTGTTTGCCTGCCTGACTTTTTAGTTCGTCCACCAAAGTTGCCTACTTTTCTGTACAGAACCT ATCACAGACCTCAGATTTTTATTCCTCGCCCCTCTTCATGTTACTGCTCATTGTATGATGCAGTTTTCTATTCAGGTTGC CGATGGATAAAGTGTTGGATATTTAGGATTTTATTGGTTCCCTACCCAAGTAGAG
CDS sequence (LotjaGi1g1v0549300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGAAGCACAGAGAAGCTGATGAACCAGATCATGGAACTCAAATTCACCTCCAAATCACTTCAACGCCAAGCTCG AAAATGCGAGAAGGAGGAGAAATCCGAGAAGCTCAAGGTCAAGAAAGCCATCGAGAAAGGCAACATGGACGGCGCACGCA TCTACGCCGAGAACGCCATCCGCAAACGCACCGAGCAGATGAACTACCTCCGCCTCTCTTCCCGCCTCGACGCCGTCGTC GCCCGCCTCGACACCCAGGCCAAGATGACCACCATCAGCAAGTCCATGGGGAACATTGTCAAGTCTCTTGAGTCCTCCCT CGCTACTGGCAACCTCCAGAAGATGTCGGAGACCATGGATAGCTTTGAGAAGCAGTTTGTTAACATGGAGGTTCAGGCTG AGTTCATGGAGTCTGCTATGGCTGGTTCCACCTCTCTTTCAACGCCTGAGGGGGAGGTTAACAGTCTTATGCAGCAGGTC GCGGATGATTACGGCCTCGAGGTATCGGTCGGTCTCCCTCAGCCCGCTGCACACGCGGTTCCGGCTAAGGAAGCTGACAA GGTTGATGAGGATGATCTTACCAGACGGCTCGCGGAGCTCAAGGCTAGAGGTTAA
Protein sequence (LotjaGi1g1v0549300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGSTEKLMNQIMELKFTSKSLQRQARKCEKEEKSEKLKVKKAIEKGNMDGARIYAENAIRKRTEQMNYLRLSSRLDAVV ARLDTQAKMTTISKSMGNIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQV ADDYGLEVSVGLPQPAAHAVPAKEADKVDEDDLTRRLAELKARG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 203 | 200 | 1.2E-125 | – | |
| PANTHER | 4 | 203 | 200 | 1.2E-125 | – | |
| Coils | 12 | 32 | 21 | - | – | |
| Pfam | 12 | 174 | 163 | 8.8E-13 | ||
| Coils | 112 | 132 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi1g1v0549300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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