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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0549800 |
| Transcript ID | LotjaGi1g1v0549800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Abscisic acid-deficient 4; TAIR: AT1G67080.1 abscisic acid (aba)-deficient 4; Swiss-Prot: sp|Q8LFP9|ABA4_ARATH Protein ABA DEFICIENT 4, chloroplastic; TrEMBL-Plants: tr|I1N5B8|I1N5B8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0549800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108010515..108014674) extracted from Lotus japonicus Gifu genome v1.2.
CTTTAGCAATAACTAAAAGTGCTTTCAACTTCAATCCATAGATTGAAAAAAGTACTTTTCATATGTGTGTAAAGGAAATC CAAATAGGCCTCATTCACCGCCAAACTCATGGATTGGTTTGTCCCACAAAAGCAGCAGAAAAATTGTGGAAAACATAGTC ATCCAATCCCATAAAGAAGTGCATTATCAGAATCATCTGAAAGACACAGAAAGGACAAAAATAAGTTGCATGTGGGAGAT TTGAAGTTTAAATCTTTCACTGCTAATTTTAGCTAACTTGTTCTCGGTGCCCATTTCACATGCTTGTCTTCCTTCCTCTT TCTCCACACAACTCCAACTATTTGAGTTAGGCAATCACCAAATTTCCTCCTTTTCTTCCGGTTTTTCTCTTCAGTGTGAA AAATGGTCACACTTACCGGTTCTGTATTTAATAATTTATACCATATATGAAGAAGTGGCCATTGTTGCTGAATCTGTTAT TAAGTCTCTTGATTTTGCTACAGTCATGTCTTTCTCCACTTGCTTTTCCCTCTCTCCATTGGCATTTAAGGTAAAGTTTC TGTTCTCTCTTGTTTTTGATTTATTCTTGGTGCTTCTAATCTCATGTGCACTTTCTTCTTGTCTTTTTGCTTTTTCTGGA TGAGGTGCTTTTTGTGGACTTCTGTTTCTCCAATTTTTTTACCCTTTTATTTTCCTTCAATGGGTTTTCTGTTTGAACTT TAAAGTTTTGAATTTGAATGGATATCTGATTGAAAATGGCCTTCTGGCATAGATTTGAATCACCAAGGCATTGCTAGAGA TATGAGCATTTCTGCATTTCTATTCTTTTGAATTTGATAGATTTGACAATATTGTTTGTTATTCATTCTGAGAATCTATA TACTAGGTCCATGTGGTACTAATAGGGAGATTATATTCAAAAAGTTAGCTTTCTGTGTCATCAAATCCTCTAAATTCATG TACTTGCCCTCTTATACAACAACTATGGTTATTTAAGCTGAGCCTAAGTTTTAAGATCACCAGTGTAGTTCATTTATTCT TATGTGTGGATAAAATGGTGTGTATTTATAGGCTCAAGAAGTTTTTTTATAGTTGAAATTCAATTGCTTAGAGATTGATC CCTTGTGGCAGGATATAAATCTTCGCGGTACAATAGGGAAGGGATTAAATTTTCCTTTCCCTATTAGAAGTAATGGTGCT GAGATTTGTAACCAACGTATTGCGCGAAGTAGAGTCAACTTAAGCGGAGACTGGAGTTTCATTGGAGGGTCCAGAATTGT TATGAAACCGAATGCTTCAAGATGGGTTCATTATCCAAGAAGCAGTCCAATACATGCTTCATGTAATCCTTTTTCATGCT ACGTTTGCTACTTTTGAAACTCACTTTTACAGTAACAAAATTTGTGTGCCATTTGCTGGTCCAAGTCTGTGTTCTGATTT TGCACATTGAAGATACTATTTAATGTCAATGAGTTTCTTACAGGGGAAGCCAGGGGTTCTGTTATAAGTTCTCTTCACTT TAAAATTACTTTCAGTGGTCTCCTGTCAATCTGATCCATGAAAGTTTTCCGTGCATGTCAATTGAAAAATATTATTGGTG CAAACTGTTTCACATACTTGTTTTTTGTATCGTGTAACTTTGCGATGTGTTGCTGAAGTTGACATGGTTTGAGTTCATGC TTCATTAAGTTTCTTAGCTTTACTCTCTTTTAAGTTTCGGAGACCAATTATTGATTGTTGCTATGATATCAAGCTCTTTT TCCCTTCTCTACAATTTTCGTGTGGCTTCTACCTGCTGACTGCAGCTATCTCTGCTGTTCTGGGTTCCTACTTTTCTGTT ATACTGTAGCATATTCTGACTCTGAAAGCGTTAAACAAATTCATTTTGGTGGACTAAAAAAACTTCTATGTCGAACCGAA TCACTTGTTCTGACATGCTTTATAATGTTATGTGCTTAAAACTCTTGCTATCTATTAATTCTCTTATTCATCGTGTGAGT TTCTTTTGTGAAGTTTGTGTCTTGATCAACATCAGTAGAGACCCCTCATTTAATTATGTTTGATTTTCCTCGTATCTAAA TTTCCTACAATCATTATAATCAGTCTGCTTTGTTTATAAAGTCTTACTTTTAGCTGATGAATTTTTGATATTGTGATGTA AAATCTAACAGGAATGAGTGAGTCTACCATCACTTACAATTCTATGTAGTAAAGTTTGTATAATTATCTTGATCACTTTG GCCATTTATACTCCTTAATTTGACTGAATATTTCCTTCTTTGTGTATAACAGTTGGTGACTATATTGGTTTAATATATTC ATTTTTCTACCTTCATGTTTAAGGTTTCGTGGGACCTCAACTTGCTAGCACAGTATTTACATGGGGAACAGTTGCAGTGC TCCCATTTTACACACTCATGGTTCTAGCTCCAAAATCTGAGCTAGTATGTCTCTTACTGTATTTAAGAAAATTTATGATC AGTGATCACAAATCTCTTCAATATATTGGTTCATTAACAACATCTTTTCATAAATAAAGATCATGTGCAAAAATTACTCA CATAGTATGATTCTGTAGTTTTTATCTGATTGTCTGATTCATTTCCCTTAATGCAAAAGTGCAGACCAAGAAGTCTGTGG AAAGTACTTTACCCTATGTAGTGCTTGGTGTTCTGTATGCATATTTATTGTACCTTTCTTGGACACCTGAAACAATTCGT TTGATTTTTGCAAGTAAACACTTGCTACCAGAGGTGTGTGTATTCATTCATTGATGAATTTCTCTTCTCAAAAGAGTTAT ATTGTCCTATACAGCTGATAACTCTGTATATTTGCATATTTCATGCAGCTGACTAGTATAGCAAAAATGTTCTCTAACGA ATTGACTTTAGCTTCTGCCTGGATTCACCTCTTGGTTGTTGATCTTTTTGCTGCAAGGTCCTGCATTTCATCTTTTTTCT TTTCCACCTTCCGCACCCTACTGTTCTTCTTTATTGTTGATATAGGAGAATTTGAATATAAGAAAAACTATATCTCTACT ACTGAGATTAAAAATATATTTGATATGTAATTAGGTTACTATATACGATATCTCTGTAATTAAGATTATATTATCAATAT ATAAAGAGTATATGGAAACTGATCTATAACATTATCCTAATTACAGATATATATATATATTTCAGGTGTCCAAGAAATCT GAATATATATTTATTGTACCTTGCTCGGAGTAGTATCCTTATTACATATCATATATATAATTCTTAATCTCAGTAGAGAT AGTATATTCTCGTATGTTCAGATTCTCCTTTAGTTGAGTTCTCATTCTTTAGTTGTTTTTCTAATAGTGTTTGTGGTTGA GTCCAGGCATATTTTCCAAGATGGACTGCAGAATCAGGTTGAAACTCGGCATTCAGTTTCATTTTGCTTGTTCTTTTGCC CCATTGGGATTCTTACCCATGTCATCACCAGAGCATTGATCAAAACTACAAGAAAAGAGGGTCATGTTCTATAGAGGGCA CCTGCTAACACACAAGCAAACAAATATTTCATTTGAAGTTTGAGATTTTGAGAGTGAGTTGAAGTTGCTTATAACTTCGT CTGTAACTTATTTTTTCTCTGGTTTTCAATCCAAACATTACCTAGTTTGTTCATTTTTCAACCTCAAGTGTACCTATTAC CAAGGCAGAGAGTCTCTAACACTTCCTCCTTTAAGTTGCAAAGCAAACATCAAATCAACCTTCTCCTTTGATCAATTAGC ATGGGCATCTGTTTGAAATTTTGCTCTTGTTTCAAACAGAAGACCTTGGTCGGGCGGGATGCTCTAAACCAGCAAATCAC TCAGGAAATTGCTTTTTTGAAAGGATTGCTTTTCCACAAAATATAATGCTTGCAGCTGTATAATACAACTGATGTAAACT CCAATGCATTGTTAGTAGTGGCAATTTATGTCCCTTCATTTTTTTTTGTCAAATTTGTGCAATATATAACACTTTTTTTT TTCGATTCATCGGAAAACAACAAATCATTATGGAATTTTTATATTAGATAATTACTTAAATCTTCCTGCCAAACAAGTAC TATTTTTTAATAAACCCAGTAGTATATTTTTTTATATTCCAGGTTTTAAAACTCGGTAGAAGAAAAGAGAGAGCAGGTTG
CDS sequence (LotjaGi1g1v0549800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTCTCCACTTGCTTTTCCCTCTCTCCATTGGCATTTAAGGATATAAATCTTCGCGGTACAATAGGGAAGGGATT AAATTTTCCTTTCCCTATTAGAAGTAATGGTGCTGAGATTTGTAACCAACGTATTGCGCGAAGTAGAGTCAACTTAAGCG GAGACTGGAGTTTCATTGGAGGGTCCAGAATTGTTATGAAACCGAATGCTTCAAGATGGGTTCATTATCCAAGAAGCAGT CCAATACATGCTTCATGTTTCGTGGGACCTCAACTTGCTAGCACAGTATTTACATGGGGAACAGTTGCAGTGCTCCCATT TTACACACTCATGGTTCTAGCTCCAAAATCTGAGCTAACCAAGAAGTCTGTGGAAAGTACTTTACCCTATGTAGTGCTTG GTGTTCTGTATGCATATTTATTGTACCTTTCTTGGACACCTGAAACAATTCGTTTGATTTTTGCAAGTAAACACTTGCTA CCAGAGCTGACTAGTATAGCAAAAATGTTCTCTAACGAATTGACTTTAGCTTCTGCCTGGATTCACCTCTTGGTTGTTGA TCTTTTTGCTGCAAGGCATATTTTCCAAGATGGACTGCAGAATCAGGTTGAAACTCGGCATTCAGTTTCATTTTGCTTGT TCTTTTGCCCCATTGGGATTCTTACCCATGTCATCACCAGAGCATTGATCAAAACTACAAGAAAAGAGGGTCATGTTCTA TAG
Protein sequence (LotjaGi1g1v0549800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFSTCFSLSPLAFKDINLRGTIGKGLNFPFPIRSNGAEICNQRIARSRVNLSGDWSFIGGSRIVMKPNASRWVHYPRSS PIHASCFVGPQLASTVFTWGTVAVLPFYTLMVLAPKSELTKKSVESTLPYVVLGVLYAYLLYLSWTPETIRLIFASKHLL PELTSIAKMFSNELTLASAWIHLLVVDLFAARHIFQDGLQNQVETRHSVSFCLFFCPIGILTHVITRALIKTTRKEGHVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 240 | 240 | 1.9E-137 | – | |
| Phobius | 1 | 95 | 95 | - | – | |
| PANTHER | 1 | 240 | 240 | 1.9E-137 | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| Pfam | 95 | 223 | 129 | 4.8E-38 | ||
| Phobius | 96 | 115 | 20 | - | – | |
| Phobius | 116 | 126 | 11 | - | – | |
| Phobius | 127 | 145 | 19 | - | – | |
| TMHMM | 127 | 146 | 20 | - | – | |
| Phobius | 146 | 164 | 19 | - | – | |
| Phobius | 165 | 190 | 26 | - | – | |
| TMHMM | 176 | 195 | 20 | - | – | |
| Phobius | 191 | 210 | 20 | - | – | |
| TMHMM | 208 | 230 | 23 | - | – | |
| Phobius | 211 | 230 | 20 | - | – | |
| Phobius | 231 | 240 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0549800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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