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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0553300 |
| Transcript ID | LotjaGi1g1v0553300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Isocitrate lyase; TAIR: AT2G43180.4 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|Q0QLE4|DML_EUBBA 2,3-dimethylmalate lyase; TrEMBL-Plants: tr|A0A151TDD1|A0A151TDD1_CAJCA Putative carboxyvinyl-carboxyphosphonate phosphorylmutase; Found in the gene: LotjaGi1g1v0553300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108513844..108517832) extracted from Lotus japonicus Gifu genome v1.2.
GACTTCTATGCCTACTTTTGCTTAATATAATTGCAGTTTCCATTAAAAAAAAAGTCTGGTGGATAGAAAAAATCTTGGTT GGAAAAGAGAGATAGTCTCATCATAATGTGTTTATTTCCGGCTCGAACAAGATTGTTTTGTATGGAGAAAGATATAATGA GTTTGTTAGTGGATGATTTCGTCGGTGGAGTTGATCCCAGCAGAATCACGTGAACTTGTATTATTCATTCCTCAATCAGT ATTTTGTCGACGTAGTCCAGCGAAAACGCACACTTCACTTCACACCACCGGAAGCAGCAGCAGAAAAATGGAGAAAGGAG TGAAGGCCCTTCGTCGACTTCTGCAATCCCCTGGTGTTCACCAGGGCCCTATTGCTTTCAACGCTCTCAGTGCCAAGCTC GTTGAATCCACCGGATTCCCCTTCATTTTCACCGGCGGTTTCGCCCTCTCCGCCACCAGATTGGCTCTGCCAGATGCCGG ACTCATTTCCTACGGCGAAATGGTCGATCAGGGCCGCCTCGTCACCCAGGCCATCTCTGTTCCTGTCATCGGCGACGCCG ATACCGGTTTCGGAAACTCGGTCAACGTCAAGAGAACTGTCAAGGGTTTCATCGATGCTGGCTTTGCCGGAATCATGCTC GAAGATCAGGTTTCTTTTCTTTCATTGCTTTGATTTTCATCGCTAACCTGAATTAGGCCCCGTTTGGCAAAACAACTTAA TTAAGCGCTTATTCATAAGTTATTTTAAAATTTTTATTGAAATAAATTGAAAATAAGCTATATATAAGCCTAAACTATTT TTTATAAGTTCCGATAACATATGAAAATAAGCTCAAAACAACTTATGGTAGGTCACAAGTTGTTTGCATATATTAGAAAT TAGGAGGCCTATACTCAACCACAAAAGCTAGCTCAAGAGTTAAGGTTTGCACTATCCTTATAAAGCTTATCTTGGCTCTA TCTCTAGCTAATGTGGGACTTCTAACAGCATAAGCTCTCCCAAACACTTGCACAAGCGCTTATGCTATCAGATAAGCTCA AAAAGCTCTCCCAAACTGGACCTTAGTAATAATTGTGCATAATCATTTTTCCATGGATATATAGAATATAGATTGTTGGG AATCAAATGAGAATTAATTTTAATATCAAAATCAATTTTGTGGTGAAGTTAGAGAGGGTGACTTAATTTTGAGTCAATCA CAGATAAATTATTAATTGTAGCTATGGATTTTGATTTGGTAGATATCGCCAAAAGCATGTGGGCACACCCAAGGGAGGAA AGTGGTGTCTAGAGAAGAGGCGTTGATGCGGATCAAAGCTGCTGTTGATGCTAGAAGAGAGAGTGGCTCTGATATTGTCA TTGTGGCACGATCAGATGCTCGACAAGCTGTGTCTTTGGATGAAGCCTTCATCAGGACAAAGGCTTTTGCAGAAATTGGA GCTGATGTTCTTTTCATTGATGCACTCGCCTCAATTGAAGAGATGAAAGCTTTCTGTCAAGTTTCTCCCCATGTTCCTAA ACTGGTAAATATTTTTTTTTTCCAGTTTCACAATTTACAGGCCACACCCTAACTTTGAAAAGAGGGAAAGGGAAATGGTA TGTTAACTTGTACTCTTGTGCAGGCCAATATGCTTGAAGGAGGAGGTAAAACACCAATACTCAGCCCTCGTGAGCTTGAC GAAATTGGCTACAAGCTTGTTATTTATCCACTTTCCTTGCTGGGGGTTTCTATAAAAGCAATGCAGGTGAGGAACATGTC TTTCCCTTTTATATTCTCTTGATACTGATTGAAGTTTTGCACTTATAAGTTCAGGTGCATGCATGTGAAGTCTTTTTGTG GTTATGAGATACTTTTCTTTGTGGTGCATGCCTGTGAAGTGTTATACCTTTTAACTCCTTTGTAACAGGGTAGACTGTTA ATTTTTAGAATTCTTATAACATATTTGACCTTTTTCTGAAGTATCATTTAGATTTGATTATTTATAGATAAGTGATATCT TTTATGACTGAATTTGTAGGATGCGCTTGCTGCCATTAAGGAAGGCGGTGTTCCTCCGCCGGAAAGCATGCCATCTTTTG AAGAAATTAAGGATATCGTAGGTTTCAATGCTTATTATGAAGAAGAGAAGCGTTATGCCACAACCTCCGATCAACAGCTT TAAAAGAGAAGTAGGAGAGGTCAGTCTTTTGAAAAACTAACTTGCCTTTTACCAAGGGGCATTGTTTGGAAAGTGATAAT GGCAATGGCTGGAGGCTTATTAGATTCATATGCAATCATTTCCTGCTTTTATCTTCTTAACTATGTCTCTACTCTCTTGG ATATGTTCAACACTGAATATCAAGCTAAATATCTTATCAGTGAATTTCTCTGTATCATCTCTAGGTGAAAATCAAAGACT GAAGAAAGCTCCTGCTGATACATTGTAATCTGTATTTCTTTCTTGCATTCTCACAGCTATTATTGTTTGTGGTAGCCTAT GTAACATAATAAGTGAGAGACCAAGTTGATTCAAAGACTGAAGAAAGCTCGTGCTGATACATTGTAAATATACTGTATTT CTTTCTTGCATTCTCACAGCTATTATTGTTTGTGGTAGCCTATGTAACATAATAAGTGAGAGACCAAGTTGATACAAAGC ATTATTCTAAATTGAGTAAAGATTGTTTGACACCTTTTATTTCGTTATTCGCATTATATGCATAATGAGATTGGAGGTGA GTAATATAATCTCCACATAAGATGAGAAAAGAATAAAGTGAATGAAAGAGATATAATATAGAAGCAAAAGTTTGAAAAAA ATTACAGCTCATTCTAAATTTACTTGGATTCCTAGTTCCTGCTAGGCTGCAATCTGAGAAGTGCTCATTTCCACTATATT CATTTAGATATTCATGTTCACACGTCATAGCCTTACCTTATGATATGTTATCAAAGCCTTTATTACCATGTAGTTAATAT TTTGATCTTTGTAGCCCTCATTCTTTTAAATACAAGTTTAATTTCAGCACCAAGGTCTTGCAATTTCCAGGCTTCACTTG CAGAGAGCATTTGTTTGAGGCTTTTCACAAATAAATTTAAACTTTTGAGATACTTGTTTCATGATATTTGATCATAGTAG TTTTCAAAGAGAGCCATGCCTGTTCAACAACTGTTTTGTAAAAACAGTTATCAGTTTTGAAAAACAAAAAAGGAAAAAAC TAATTTGGTATGAATAATTTTCAAAAACAGTTCTTATTTTCAGTTATTATGACTGAAATCTCCAAACATCTCGGATATGT TTTTTGTTTCTATTTTTAGTTTTCATGTCACATGTTTTTTAGCTTTGAAAAAACATAACCATTTTATTTGCTTTTATTCT TTTGGAATACATGTTCTAGGATGTAGTATTTAAATTCAGAAAATTGAGAATAAAATCAAACAAGACTCGATAACTTGGTT GTGGAAGAATGTAGTGACTTGTGTTGTGTATTATCCCTTTAATATCTGTAATAGATTAAGTATTTTTGCCTATGGTGTTT CATGTTATTGCAGAGGTGACAAAGATGAGGATGAGGATCAGCACCCTCTTAATTCGATCTGCTGAAAATCCTCCCCGAAT CAAACAGGATGAGGAAGCCAATTCAGGATATTCTAGCAGAGGAAATGGTGCTGGAAGCTCAAAAACCTGGGTAGCTTAAG AAATAATAGACCTAGGAAGAGCCTCCTTCAAAAGTGGATGAGACTATTCTCATTTTACTTTGTATTTGCAGCTCCAAGAT TTGCAATCCACACAAAGCAAACATTTTGATTATTGTCCATATTTTCTATCATTTGATGGCAGAGCTCGTACGTTAGATGG AATTTTGAGGATTTTTTTTTATGATTTGGAAATTAATAGTCACGCCTTTTTGTCAGTATCTTGCTAATTATCCGATATTT TTTCTATTGAAGGAATTTTTCCTATTGAAGGAAATTGATGAAGATAATTGAATTATAACCTAAAGAAAA
CDS sequence (LotjaGi1g1v0553300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCGTCGGTGGAGTTGATCCCAGCAGAATCACGTGAACTTGTATTATTCATTCCTCAATCAGTATTTTGTCGACG TAGTCCAGCGAAAACGCACACTTCACTTCACACCACCGGAAGCAGCAGCAGAAAAATGGAGAAAGGAGTGAAGGCCCTTC GTCGACTTCTGCAATCCCCTGGTGTTCACCAGGGCCCTATTGCTTTCAACGCTCTCAGTGCCAAGCTCGTTGAATCCACC GGATTCCCCTTCATTTTCACCGGCGGTTTCGCCCTCTCCGCCACCAGATTGGCTCTGCCAGATGCCGGACTCATTTCCTA CGGCGAAATGGTCGATCAGGGCCGCCTCGTCACCCAGGCCATCTCTGTTCCTGTCATCGGCGACGCCGATACCGGTTTCG GAAACTCGGTCAACGTCAAGAGAACTGTCAAGGGTTTCATCGATGCTGGCTTTGCCGGAATCATGCTCGAAGATCAGATA TCGCCAAAAGCATGTGGGCACACCCAAGGGAGGAAAGTGGTGTCTAGAGAAGAGGCGTTGATGCGGATCAAAGCTGCTGT TGATGCTAGAAGAGAGAGTGGCTCTGATATTGTCATTGTGGCACGATCAGATGCTCGACAAGCTGTGTCTTTGGATGAAG CCTTCATCAGGACAAAGGCTTTTGCAGAAATTGGAGCTGATGTTCTTTTCATTGATGCACTCGCCTCAATTGAAGAGATG AAAGCTTTCTGTCAAGTTTCTCCCCATGTTCCTAAACTGGCCAATATGCTTGAAGGAGGAGGTAAAACACCAATACTCAG CCCTCGTGAGCTTGACGAAATTGGCTACAAGCTTGTTATTTATCCACTTTCCTTGCTGGGGGTTTCTATAAAAGCAATGC AGGATGCGCTTGCTGCCATTAAGGAAGGCGGTGTTCCTCCGCCGGAAAGCATGCCATCTTTTGAAGAAATTAAGGATATC GTAGGTTTCAATGCTTATTATGAAGAAGAGAAGCGTTATGCCACAACCTCCGATCAACAGCTTTAA
Protein sequence (LotjaGi1g1v0553300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISSVELIPAESRELVLFIPQSVFCRRSPAKTHTSLHTTGSSSRKMEKGVKALRRLLQSPGVHQGPIAFNALSAKLVEST GFPFIFTGGFALSATRLALPDAGLISYGEMVDQGRLVTQAISVPVIGDADTGFGNSVNVKRTVKGFIDAGFAGIMLEDQI SPKACGHTQGRKVVSREEALMRIKAAVDARRESGSDIVIVARSDARQAVSLDEAFIRTKAFAEIGADVLFIDALASIEEM KAFCQVSPHVPKLANMLEGGGKTPILSPRELDEIGYKLVIYPLSLLGVSIKAMQDALAAIKEGGVPPPESMPSFEEIKDI VGFNAYYEEEKRYATTSDQQL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 29 | 339 | 311 | 5.38E-90 | ||
| PANTHER | 35 | 339 | 305 | 1.6E-166 | – | |
| PANTHER | 35 | 339 | 305 | 1.6E-166 | – | |
| Gene3D | 40 | 340 | 301 | 2.6E-101 | ||
| CDD | 53 | 299 | 247 | 3.5426E-95 | ||
| Pfam | 61 | 300 | 240 | 5.8E-46 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi1g1v0553300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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