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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0554800 |
Transcript ID | LotjaGi1g1v0554800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pollen Ole e 1 allergen/extensin; TAIR: AT5G13140.1 Pollen Ole e 1 allergen and extensin family protein; Swiss-Prot: sp|Q6NMJ2|OLE96_ARATH Pollen-specific protein-like At4g18596; TrEMBL-Plants: tr|I1KZG6|I1KZG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0554800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108694758..108696103) extracted from Lotus japonicus Gifu genome v1.2.
ATTATCTTTCTACAGTGAAATAAACCCTGAAATTTTTAATTTACTTTACACATTTTTCTCCCAACTACCGGCAGGTAGTA AAATTTCAATTGGCAAATGGGACAGAAAAACATGCATCTTTCTTAATAAATATATATGTGCCTGTATGACTTTGCATTTT TTGTTACCATAAAAAAACCTCAAAATCAAACCTGACCTGTCAATCTATTTTTTGGTAAGATCATCTCTAATAAACAAGTG TGCCAACAACATCAATCTTCACATGTCTTTGGTTGTAGTGTTCATTTAAATATATTGTGTTCGGTCCTCCTACTACTAAA CACTACTCACGGGTTCACTTTATGACAACACGCTAGCTTTCTCACTATAAAAATACACATTGTTGCATTTTACATTGCCA ACTACCATCGATATACACATTTATTTTTTGTAAAAGTAGCCATCAGAAGTTTCTTCATTCATATTTTGATGGATCCAATT GTTTTTCTTCTTCTTTTCACTTTTCTGCCACTTGTGCTTATTGCTCAATCTTCGACGACTCTGTCCCAATCCCAGATAAG TATAGTAGGAGTTGTTTACTGTGATACATGCTCAACCACCACTTTCTCTAAAGAAAGCTACTTCTTGGCAGGTGTTGAGG TTCACATAGATTGCAGATTTAGAGAAACCTCGCCGAGAACGAGCGAGCAGATAAGCTTATCGGTGAACAGAACCACAAAC CAAGATGGAGTTTACAAGCTAGATATACCAATATCATCGGTTGAGGATTCATCAGGATCAGTTAATTGCATGGAAGCAGG TTCAACAATTTGCCAAGCAAGTTTGATAGGGATCAGCAACTCATATTCCAGTTGCAATGTTCCATTTCTAAAGAGTACAA CACATCAAGTGTCAACGAAGGATCATAATAATCAATGTGTTTACACCTTGAGTGGTCTGAGTTACAAGCCACCTCAAAAG AACACTAGCTTATGTAATTAAGGGAGCGTGCCTTCCTCATCGGTTGATCAAGACATGTCCCTCTTGACAATGTAATTAAC TTGATGTTCAGTTTTCCTTAGTTAAAATATAATAGGTGTTTGCTATGGTACCTTAACCCAAATCAAGGTATGGTACTCAA AATGAGATAATTCAATAATAAAGAAGCATGTACAAGTTATAATTTTGATGTTATTTTATCATAGTGATGCAACATTTCAT TCATAGAGACATGAGATTTGTAAGTTGTGTTTTTTTAGGCTTTGTTCATCCGTCGATCATGGTTATTTTACACGCATCTC AATCATAATCGTTCATCTCTACAACTAAATCATTTTTCATGAGATGAAATTAATTGAATAGGAAAG
CDS sequence (LotjaGi1g1v0554800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAATTGTTTTTCTTCTTCTTTTCACTTTTCTGCCACTTGTGCTTATTGCTCAATCTTCGACGACTCTGTCCCA ATCCCAGATAAGTATAGTAGGAGTTGTTTACTGTGATACATGCTCAACCACCACTTTCTCTAAAGAAAGCTACTTCTTGG CAGGTGTTGAGGTTCACATAGATTGCAGATTTAGAGAAACCTCGCCGAGAACGAGCGAGCAGATAAGCTTATCGGTGAAC AGAACCACAAACCAAGATGGAGTTTACAAGCTAGATATACCAATATCATCGGTTGAGGATTCATCAGGATCAGTTAATTG CATGGAAGCAGGTTCAACAATTTGCCAAGCAAGTTTGATAGGGATCAGCAACTCATATTCCAGTTGCAATGTTCCATTTC TAAAGAGTACAACACATCAAGTGTCAACGAAGGATCATAATAATCAATGTGTTTACACCTTGAGTGGTCTGAGTTACAAG CCACCTCAAAAGAACACTAGCTTATGTAATTAA
Protein sequence (LotjaGi1g1v0554800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPIVFLLLFTFLPLVLIAQSSTTLSQSQISIVGVVYCDTCSTTTFSKESYFLAGVEVHIDCRFRETSPRTSEQISLSVN RTTNQDGVYKLDIPISSVEDSSGSVNCMEAGSTICQASLIGISNSYSSCNVPFLKSTTHQVSTKDHNNQCVYTLSGLSYK PPQKNTSLCN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 18 | 18 | - | – | |
PANTHER | 1 | 170 | 170 | 8.6E-59 | – | |
PANTHER | 1 | 170 | 170 | 8.6E-59 | – | |
Phobius | 1 | 3 | 3 | - | – | |
Phobius | 1 | 26 | 26 | - | – | |
Phobius | 4 | 19 | 16 | - | – | |
Phobius | 20 | 26 | 7 | - | – | |
Phobius | 27 | 170 | 144 | - | – | |
Pfam | 32 | 133 | 102 | 3.2E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0554800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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