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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0555700 |
| Transcript ID | LotjaGi1g1v0555700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Integral membrane protein hemolysin-III like protein; TAIR: AT2G45250.1 integral membrane hemolysin-III-like protein; Swiss-Prot: sp|Q6X4M3|LIN52_ONCMY Protein lin-52 homolog; TrEMBL-Plants: tr|I1K6V1|I1K6V1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0555700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108812770..108816451) extracted from Lotus japonicus Gifu genome v1.2.
GGACCGCCATAAAAGTGAGTGTCCCAAATAGTACAGCACTGTACCGTAGTACATGTATCAGGAGTACTCATAATATCATA CAAGATATGAAGTTTAGGGTGTAAAATCGAATGTAAACTCATTTTTGAGTAATCTCAGGTTAAACTCGCTCTAAATCGCG AGTAAAAAGAAAAGGGAGAGGGACATTTTAGTAAGTTTGGGTATTAGTTATTAGGGTTTTGCTTTCGGACAAAATACCCA TTCTGATTTCCTGACTCGAAGAACAACCACTGTGTTCGCTCTAAAAGTTCCGGCGTCGAAGAACAGACGACGACCACCGT CACGCGACGTTCCAGCAAGGCTCCGTCGCGGCGCTGAGTTACAACTCTCGTCTCATCTCTCTGGTACGATGCTGCTCCGT CGCGGCACAAAGGTTCCGGCGACTTCTATTATCCGGCAAGTCAATACCTCTCCCCTTCAAGCTTCTCTGAACTCACTAAG TGAGTACTAACTACACATTAATTCTGATTTCAATTTGCAATTGTTTTGTGTTGATAAGTTGCTGGCCTGATTCTGATGTT TTCTTGTACTCCCATGATGATGAACTTGAAAATATTGGAGGATTGGAAAATTGATGATGATGACTCATTTGTTCTTATTT TAAGTTTATCATAATGTTTTTTTTATGACTTATGAATCTTAGATTTAGATATTTGGTTGTTTTGTGCATGGTTTTCATTA TTGAATGTAGCTATTATTGGACGATTTGGTTAATTTTTAATGTTATTAGTATGTCTTCATCATTATTATGGTTTTTAAAT ATTTTTTGTTGCATGGCTGTCGAGTTTACTTTTCGAGTTTACCCTCCCTCCACGAGTTTACTTAAACTCTCGAGTTTGAC AATCTTGATTGGGTGGACATCAATGTGTTGTATTTGTATGTGCATGTGTATATTATTGTTGTCAAATCGCGATCGTAGAC CTTCGCGGTGAGCCAAAAATCCGCTATTTCGGTGGGAATAGCGTACTATAGTGGGCAATAGCGGTGTCGCGATTAGCCAA AAATCTGCTACACTATAGCGGCGTAGCGCCGCTCTAGCTACTATTTGATAACACTGGTGTATATATAGAATTATGATATT ATATTCACATAAAATAAAAATTAAGAAAAAATCTACTAAAATAGGAATCATATGAAGGTGGGGAATCTGCTCTTGGGTCA TGGCATTGCGTTTACTTCTTGAGTGATCAGCATTTCTACAATCTCCAAGCAACCTACCATAAACATTGTTACAACTTGTT GTAAGAAGAGAAACTATATTGATCTCATGAACACTAGAGGGACCCAAAAAACATAATTAAGCCTTTCTTGACTCATCCTT ATGCTATGGGTATGATGCCTTTGCATTGATATCTAAAGTTGAAGGTATGCGAGTATGACTCCTTGTTTTACAAATATAGA TCATGTGGTTTATTCCTGGAAAGTGACATATGGGAGTTTTTCTTTTCAGAAACTTGTTTCCTTTGCATAATTATCTAGGT TACTTTGACTCAAAATTGCTGTTTCCTTTCATTTTTTATTTTTTATTTTCTGTTCTAGACTTCTAGCTACTTCATCTTAC CTAATATCTTACTTTTGTGAACAGCTATATATGGTTCAACAAAGTATAGATTATAGTTTTGTGAGTATAGTCAGGACAAG CAAAATGGACTTGCCTAATCGTGATAAACAACCTACTGTTGATGTGAAGAAGACAGCATCGAGAGATCTGCAGAATGATA ATAAAATCATGGCGCTAACCTCTGTTGGAAGCTCTTCAGTTTTAAAGGATAAGGATCCTGATACTGATTCTAATAGAATT TCTGGCACGAAAAGACCCTTGTCTGACTACCCAGTGAACCATCATCTCCAACAGTCTCCAGGCAATAGTACTGCAAATGG ACATCTTGTTTATGTCCGTAGAAAATCAGAAGCAGAATTGGGAAAGTGTGCTGCTTTTGAAAATCCAACTAATAATGCTT TTTGTCAACCTCCAAGGCAACTTTGTAGCGAAGAAGAGACTGCTCTACCAAAACCTCAGCTAAAGGAGCCAAACGTTTCT TGTTTCCCAGCATTTGCACCTTTTCCGTTGACTTCTTCAATAAGCTCATCTGGAAGGCCTTCAGTTCCTATTTCTTGTGG AAAGTCTACCATGAAGTTAGCACCCGTTGAGTCCAATTGTGTGACAACTTCGTCTGGCCCTACCATTGGTAATCCAAAGG GATTAATTGATATGCAATGGGAGGAGCGATATCAACAATTGCAGATGTTATTGAGAAAATTGGACCAATCAGACCAAGTA GAATATGTCCAAAGTACGTACAGAAATCCTAAAATAATCTCTCAAACGCTTTCTAAGCTCTTTATAAGTTGATATTTTAT ATGGCTGATATTGTGTTTTGGCAGTGCTTCAATCCTTGTCCTCAGTTGAACTTAGCAGACATGCCGTTGAGTTAGAGAAG AGAGCAATTCAGCTTTCACTAGAGGAAGGTAATAAAATTGTTGTTTTAAATGTTTCCTTTCTTAAGCACAGGCTTAGAGA TGATGCATAGTCATTGTGTATGGATTTGGGGTGTGGTATTATGCACTAACTCAAATCTTAAGATTATCCACCATGAGTCA TGCTTGTGGTAGTTCAACTAATGTGAGCAAATAATTGAATTGCTTTGATGTCATTCATTGCTATATGCCTGGGAGTTTAT TTGTCTTTGATGTATTCTGTTGTTTATGTTCATCAATTTGATACAACTACTACATTAACTGAAACTTAAAGCTTTTGTAG TGTATTCCTTCCCCCTTTTTGTTTCCAGCTATATTTGATGCTTTAGACTTGAGAAAGACTACTGTCAGGACTCGAGATAT TCATATTTTGACAGATTCACTTTTTTTAATTAGTAGCAGTAAAAATAAAAAATAGACACGATTCAAAATACAGTTTACAT ATCATGAGTTGCAGTTGTCAGCATCCTGAGTCTGCTTACTTTTATGATTGTATCCATATCCATGAAAATACTTTCAGCAA CTGATTGTGTTTTTAGTTTTAGCATACAACATATATTTTTACATAACAGGTAGCTGATGACTTTTTTCTCACATATTTAC TATGACAGCTAAAGAATTACAGCGGGTTGCAGTCTTGAATGTCTTGGGAAAATCAGCAAAAAAATTCAAAGCACCCGCAG ATCATGACGAGTGTTCAGACAAGTTGAAGACATCATCATGATCTTCCTACTCTTTCAGTTGCAGTAATTTCTCAAGCAGT GGGAACTTTGTGATTGTTTATTGTGCTTAGTGTTTATCCTTATTGTTTTATCATTCTCGGTTTCATTCAGTTCATTCAGA CCAAGCTAGAGTAGAAATAATATAATTTAGGCCGATAATAGTATAATACAAGTGAGCATGCATTTCTCATTGTTACTCCC TTCCCACTATACACATCATCTCATCAATTGGTATCAAATCATTCCCTATTCATCTCCTACATATTTAATGCCTATAATGT CCCTTCCTGTTTTTCTAGGTAATTCTTTTTAGTGCCCGTGCGATGCACGGATGGGAAATACTAATAAAAGATGAAAATAT TAAATTAAGAAATCTAAGAATTAACAAAAAATACGAAGAAAATTATTAAAAATACGTTATTTGTTTTGGAACAAACGTTT CC
CDS sequence (LotjaGi1g1v0555700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCAACAAAGTATAGATTATAGTTTTGTGAGTATAGTCAGGACAAGCAAAATGGACTTGCCTAATCGTGATAAACA ACCTACTGTTGATGTGAAGAAGACAGCATCGAGAGATCTGCAGAATGATAATAAAATCATGGCGCTAACCTCTGTTGGAA GCTCTTCAGTTTTAAAGGATAAGGATCCTGATACTGATTCTAATAGAATTTCTGGCACGAAAAGACCCTTGTCTGACTAC CCAGTGAACCATCATCTCCAACAGTCTCCAGGCAATAGTACTGCAAATGGACATCTTGTTTATGTCCGTAGAAAATCAGA AGCAGAATTGGGAAAGTGTGCTGCTTTTGAAAATCCAACTAATAATGCTTTTTGTCAACCTCCAAGGCAACTTTGTAGCG AAGAAGAGACTGCTCTACCAAAACCTCAGCTAAAGGAGCCAAACGTTTCTTGTTTCCCAGCATTTGCACCTTTTCCGTTG ACTTCTTCAATAAGCTCATCTGGAAGGCCTTCAGTTCCTATTTCTTGTGGAAAGTCTACCATGAAGTTAGCACCCGTTGA GTCCAATTGTGTGACAACTTCGTCTGGCCCTACCATTGGTAATCCAAAGGGATTAATTGATATGCAATGGGAGGAGCGAT ATCAACAATTGCAGATGTTATTGAGAAAATTGGACCAATCAGACCAAGTAGAATATGTCCAAATGCTTCAATCCTTGTCC TCAGTTGAACTTAGCAGACATGCCGTTGAGTTAGAGAAGAGAGCAATTCAGCTTTCACTAGAGGAAGCTAAAGAATTACA GCGGGTTGCAGTCTTGAATGTCTTGGGAAAATCAGCAAAAAAATTCAAAGCACCCGCAGATCATGACGAGTGTTCAGACA AGTTGAAGACATCATCATGA
Protein sequence (LotjaGi1g1v0555700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQQSIDYSFVSIVRTSKMDLPNRDKQPTVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLSDY PVNHHLQQSPGNSTANGHLVYVRRKSEAELGKCAAFENPTNNAFCQPPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPL TSSISSSGRPSVPISCGKSTMKLAPVESNCVTTSSGPTIGNPKGLIDMQWEERYQQLQMLLRKLDQSDQVEYVQMLQSLS SVELSRHAVELEKRAIQLSLEEAKELQRVAVLNVLGKSAKKFKAPADHDECSDKLKTSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 287 | 274 | 3.7E-91 | – | |
| PANTHER | 14 | 287 | 274 | 3.7E-91 | – | |
| MobiDBLite | 51 | 96 | 46 | - | – | |
| MobiDBLite | 82 | 96 | 15 | - | – | |
| Pfam | 215 | 275 | 61 | 3.5E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Cellular component | DRM complex | A transcriptional repressor complex that contains the lin-9, lin-35, lin-37, lin-52, lin-53, lin-5is involved in 4-, dpl-1 and efl-1 proteins, and is involved in cell fate specification. |
Expression pattern of LotjaGi1g1v0555700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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