Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0555700 |
| Transcript ID | LotjaGi1g1v0555700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Integral membrane protein hemolysin-III like protein; TAIR: AT2G45250.1 integral membrane hemolysin-III-like protein; Swiss-Prot: sp|Q6X4M3|LIN52_ONCMY Protein lin-52 homolog; TrEMBL-Plants: tr|I1K6V1|I1K6V1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0555700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108812945..108816447) extracted from Lotus japonicus Gifu genome v1.2.
CGCCATAAAAGTGAGTGTCCCAAATAGTACAGCACTGTACCGTAGTACATGTATCAGGAGTACTCATAATATCATACAAG ATATGAAGTTTAGGGTGTAAAATCGAATGTAAACTCATTTTTGAGTAATCTCAGGTTAAACTCGCTCTAAATCGCGAGTA AAAAGAAAAGGGAGAGGGACATTTTAGTAAGTTTGGGTATTAGTTATTAGGGTTTTGCTTTCGGACAAAATACCCATTCT GATTTCCTGACTCGAAGAACAACCACTGTGTTCGCTCTAAAAGTTCCGGCGTCGAAGAACAGACGACGACCACCGTCACG CGACGTTCCAGCAAGGCTCCGTCGCGGCGCTGAGTTACAACTCTCGTCTCATCTCTCTGGTACGATGCTGCTCCGTCGCG GCACAAAGGTTCCGGCGACTTCTATTATCCGGCAAGTCAATACCTCTCCCCTTCAAGCTTCTCTGAACTCACTAAGTGAG TACTAACTACACATTAATTCTGATTTCAATTTGCAATTGTTTTGTGTTGATAAGTTGCTGGCCTGATTCTGATGTTTTCT TGTACTCCCATGATGATGAACTTGAAAATATTGGAGGATTGGAAAATTGATGATGATGACTCATTTGTTCTTATTTTAAG TTTATCATAATGTTTTTTTTATGACTTATGAATCTTAGATTTAGATATTTGGTTGTTTTGTGCATGGTTTTCATTATTGA ATGTAGCTATTATTGGACGATTTGGTTAATTTTTAATGTTATTAGTATGTCTTCATCATTATTATGGTTTTTAAATATTT TTTGTTGCATGGCTGTCGAGTTTACTTTTCGAGTTTACCCTCCCTCCACGAGTTTACTTAAACTCTCGAGTTTGACAATC TTGATTGGGTGGACATCAATGTGTTGTATTTGTATGTGCATGTGTATATTATTGTTGTCAAATCGCGATCGTAGACCTTC GCGGTGAGCCAAAAATCCGCTATTTCGGTGGGAATAGCGTACTATAGTGGGCAATAGCGGTGTCGCGATTAGCCAAAAAT CTGCTACACTATAGCGGCGTAGCGCCGCTCTAGCTACTATTTGATAACACTGGTGTATATATAGAATTATGATATTATAT TCACATAAAATAAAAATTAAGAAAAAATCTACTAAAATAGGAATCATATGAAGGTGGGGAATCTGCTCTTGGGTCATGGC ATTGCGTTTACTTCTTGAGTGATCAGCATTTCTACAATCTCCAAGCAACCTACCATAAACATTGTTACAACTTGTTGTAA GAAGAGAAACTATATTGATCTCATGAACACTAGAGGGACCCAAAAAACATAATTAAGCCTTTCTTGACTCATCCTTATGC TATGGGTATGATGCCTTTGCATTGATATCTAAAGTTGAAGGTATGCGAGTATGACTCCTTGTTTTACAAATATAGATCAT GTGGTTTATTCCTGGAAAGTGACATATGGGAGTTTTTCTTTTCAGAAACTTGTTTCCTTTGCATAATTATCTAGGTTACT TTGACTCAAAATTGCTGTTTCCTTTCATTTTTTATTTTTTATTTTCTGTTCTAGACTTCTAGCTACTTCATCTTACCTAA TATCTTACTTTTGTGAACAGCTATATATGGTTCAACAAAGTATAGATTATAGTTTTGTGAGTATAGTCAGGACAAGCAAA ATGGACTTGCCTAATCGTGATAAACAACCTACTGTTGATGTGAAGAAGACAGCATCGAGAGATCTGCAGAATGATAATAA AATCATGGCGCTAACCTCTGTTGGAAGCTCTTCAGTTTTAAAGGATAAGGATCCTGATACTGATTCTAATAGAATTTCTG GCACGAAAAGACCCTTGTCTGACTACCCAGTGAACCATCATCTCCAACAGTCTCCAGGCAATAGTACTGCAAATGGACAT CTTGTTTATGTCCGTAGAAAATCAGAAGCAGAATTGGGAAAGTGTGCTGCTTTTGAAAATCCAACTAATAATGCTTTTTG TCAACCTCCAAGGCAACTTTGTAGCGAAGAAGAGACTGCTCTACCAAAACCTCAGCTAAAGGAGCCAAACGTTTCTTGTT TCCCAGCATTTGCACCTTTTCCGTTGACTTCTTCAATAAGCTCATCTGGAAGGCCTTCAGTTCCTATTTCTTGTGGAAAG TCTACCATGAAGTTAGCACCCGTTGAGTCCAATTGTGTGACAACTTCGTCTGGCCCTACCATTGGTAATCCAAAGGGATT AATTGATATGCAATGGGAGGAGCGATATCAACAATTGCAGATGTTATTGAGAAAATTGGACCAATCAGACCAAGTAGAAT ATGTCCAAAGTACGTACAGAAATCCTAAAATAATCTCTCAAACGCTTTCTAAGCTCTTTATAAGTTGATATTTTATATGG CTGATATTGTGTTTTGGCAGTGCTTCAATCCTTGTCCTCAGTTGAACTTAGCAGACATGCCGTTGAGTTAGAGAAGAGAG CAATTCAGCTTTCACTAGAGGAAGGTAATAAAATTGTTGTTTTAAATGTTTCCTTTCTTAAGCACAGGCTTAGAGATGAT GCATAGTCATTGTGTATGGATTTGGGGTGTGGTATTATGCACTAACTCAAATCTTAAGATTATCCACCATGAGTCATGCT TGTGGTAGTTCAACTAATGTGAGCAAATAATTGAATTGCTTTGATGTCATTCATTGCTATATGCCTGGGAGTTTATTTGT CTTTGATGTATTCTGTTGTTTATGTTCATCAATTTGATACAACTACTACATTAACTGAAACTTAAAGCTTTTGTAGTGTA TTCCTTCCCCCTTTTTGTTTCCAGCTATATTTGATGCTTTAGACTTGAGAAAGACTACTGTCAGGACTCGAGATATTCAT ATTTTGACAGATTCACTTTTTTTAATTAGTAGCAGTAAAAATAAAAAATAGACACGATTCAAAATACAGTTTACATATCA TGAGTTGCAGTTGTCAGCATCCTGAGTCTGCTTACTTTTATGATTGTATCCATATCCATGAAAATACTTTCAGCAACTGA TTGTGTTTTTAGTTTTAGCATACAACATATATTTTTACATAACAGGTAGCTGATGACTTTTTTCTCACATATTTACTATG ACAGCTAAAGAATTACAGCGGGTTGCAGTCTTGAATGTCTTGGGAAAATCAGCAAAAAAATTCAAAGCACCCGCAGATCA TGACGAGTGTTCAGACAAGTTGAAGACATCATCATGATCTTCCTACTCTTTCAGTTGCAGTAATTTCTCAAGCAGTGGGA ACTTTGTGATTGTTTATTGTGCTTAGTGTTTATCCTTATTGTTTTATCATTCTCGGTTTCATTCAGTTCATTCAGACCAA GCTAGAGTAGAAATAATATAATTTAGGCCGATAATAGTATAATACAAGTGAGCATGCATTTCTCATTGTTACTCCCTTCC CACTATACACATCATCTCATCAATTGGTATCAAATCATTCCCTATTCATCTCCTACATATTTA
CDS sequence (LotjaGi1g1v0555700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCAACAAAGTATAGATTATAGTTTTGTGAGTATAGTCAGGACAAGCAAAATGGACTTGCCTAATCGTGATAAACA ACCTACTGTTGATGTGAAGAAGACAGCATCGAGAGATCTGCAGAATGATAATAAAATCATGGCGCTAACCTCTGTTGGAA GCTCTTCAGTTTTAAAGGATAAGGATCCTGATACTGATTCTAATAGAATTTCTGGCACGAAAAGACCCTTGTCTGACTAC CCAGTGAACCATCATCTCCAACAGTCTCCAGGCAATAGTACTGCAAATGGACATCTTGTTTATGTCCGTAGAAAATCAGA AGCAGAATTGGGAAAGTGTGCTGCTTTTGAAAATCCAACTAATAATGCTTTTTGTCAACCTCCAAGGCAACTTTGTAGCG AAGAAGAGACTGCTCTACCAAAACCTCAGCTAAAGGAGCCAAACGTTTCTTGTTTCCCAGCATTTGCACCTTTTCCGTTG ACTTCTTCAATAAGCTCATCTGGAAGGCCTTCAGTTCCTATTTCTTGTGGAAAGTCTACCATGAAGTTAGCACCCGTTGA GTCCAATTGTGTGACAACTTCGTCTGGCCCTACCATTGGTAATCCAAAGGGATTAATTGATATGCAATGGGAGGAGCGAT ATCAACAATTGCAGATGTTATTGAGAAAATTGGACCAATCAGACCAAGTAGAATATGTCCAAATGCTTCAATCCTTGTCC TCAGTTGAACTTAGCAGACATGCCGTTGAGTTAGAGAAGAGAGCAATTCAGCTTTCACTAGAGGAAGCTAAAGAATTACA GCGGGTTGCAGTCTTGAATGTCTTGGGAAAATCAGCAAAAAAATTCAAAGCACCCGCAGATCATGACGAGTGTTCAGACA AGTTGAAGACATCATCATGA
Protein sequence (LotjaGi1g1v0555700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQQSIDYSFVSIVRTSKMDLPNRDKQPTVDVKKTASRDLQNDNKIMALTSVGSSSVLKDKDPDTDSNRISGTKRPLSDY PVNHHLQQSPGNSTANGHLVYVRRKSEAELGKCAAFENPTNNAFCQPPRQLCSEEETALPKPQLKEPNVSCFPAFAPFPL TSSISSSGRPSVPISCGKSTMKLAPVESNCVTTSSGPTIGNPKGLIDMQWEERYQQLQMLLRKLDQSDQVEYVQMLQSLS SVELSRHAVELEKRAIQLSLEEAKELQRVAVLNVLGKSAKKFKAPADHDECSDKLKTSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 287 | 274 | 3.7E-91 | – | |
| PANTHER | 14 | 287 | 274 | 3.7E-91 | – | |
| MobiDBLite | 51 | 96 | 46 | - | – | |
| MobiDBLite | 82 | 96 | 15 | - | – | |
| Pfam | 215 | 275 | 61 | 3.5E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Cellular component | DRM complex | A transcriptional repressor complex that contains the lin-9, lin-35, lin-37, lin-52, lin-53, lin-5is involved in 4-, dpl-1 and efl-1 proteins, and is involved in cell fate specification. |
Expression pattern of LotjaGi1g1v0555700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…