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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0555900 |
| Transcript ID | LotjaGi1g1v0555900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-dependent protein kinase; TAIR: AT3G10660.1 calmodulin-domain protein kinase cdpk isoform 2; Swiss-Prot: sp|Q94743|SORCN_SCHJA Sorcin; TrEMBL-Plants: tr|I1JSB3|I1JSB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0555900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108820476..108825258) extracted from Lotus japonicus Gifu genome v1.2.
GATGAACTAAAATACTATTAAGTCTAAATACATTTTTGTTTTTGTTTTTTATGCTTGTTGATACTGTTTTGAGCAGAATG GATGAAATGGAGAAAAAGGCAGTGCTCCGGGAGTGGTTCGACCGAGTTGACTCGGAGAAAACTGGAAGCATAACAGCGCC CCAACTCAAGGTAAAGATTTGAATTTCAATTCTGCAATATTAATTTAATTAATTAATTAAAGTTTGTTTGTTATTGACAA TCAATCAGACGGCCCTGGCCGTGGGCAACCTCGAGTTTCCGCTCTCAGTTGTTCAGCAGATGATCAGGATGTGCGACTTT GATAGGAATGGTACCATGAGCTTTCAAGGTATGCAATTGCAATGCATCTCATTTTATGTTTGCGTTACATCTTATCTCAC TATCTAACCTTCCCATAAATTGCTTTTCCCAGAATTTGTTGCTCTCAACACCTTCCTTCTTAAGGTCAGTGCTTTCACTT GCGCTAAATAACTCTGGAATGAATCCACATGTCCCTAATATACTATTTAAATGGTTATGCAGGTTCAGCATGCATTTTCT GATCTAGAGAGGTAATTGTTTTTTATTTTCTTTTCTCATTAAGGTTATGCACTTTCATTTCATTTTTATAATTCTAAATA ATTTCCTTTAAATATACCTATCTCTGGTGACTGGTTAGAGTAACTACATGATGATTAGTGAATGATCTATCACGAAAGGA ATTAATACTTTCAAGGTTTATAAATCACGGGAGCCTCCGACGTTTGAATCCTAGTTTTCTTGTGGCCTAGTACTTCTCAG TGTTGTCAAATCGCGATCGCGGACCATCGCAGTAAGCAAAAAATCCGCTATTTCAGCCGCTATTTAGCAGCGAATAGCTG GAATAGCACGCTATAGTGGGCAATAGCGGCGTCGCGATTAGCCAAAAATCCGCTACGCTATAGCCACTATTTGGTAACAC GGGTACTTCTGAAGCCTAAATACCTACTATTTGTAATTGAAAGTCTTCTCCACAATCAAGTCCTTTGTCTGCGGTGACTG GTGATGTCAAAACATGTTTGGTTTGGAAGTTTCACTCCCTCCTGGTCTAAGCTAGAATTGAACTCTGATTTGGATATAAA ATCTGCTTTGTTGGTTTTTCCTTCGGGACAGATTACTTTTGAACGTTAACACTTGCTGGGTTTATTGATGCAGGGGTCGT GGTTTTCTTGTACCTGATGATGTATTTGAGGTATATTTAAAGAATTATTCCAGCAACATTCTAAATTATGCTGTGTGCTC ACTGTTGCTAGCTTTGTCCATCCACTTGATCTTATAGTTTTTAAAACTACTCCTCCAGTACAAATAAACTGCTAAGTTCC TTTTTGTTCAATAATGATGTATTTTCTCCTATTACAGTGGTGTCCTTGCTATATTTGTTTTCTTCAGGATATAAGAATAT TATTGATTAGAGTCTACATAACTATGCTTATTTCTGCATAAAACTCGTCTTGATGAATTCCTGAATATGTTTTCAGGCTT TGGTAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTCTACTCTGTCTGTGAGGTATAACATCTTTGTAGTTTAGACTTT AGATGTCATGTGAACTAAATTTATGCTGGAGCAGTTGTGCATCACAATCAATGGTTGTAGTCAAAACTATGTCAAGATGG TTTACACTCCTTGTGCTTCCTCATGGATTAAACTGTAGTTGGTTATACTTCCATCAACATTGCAATTCAGATGACCATGC CAAAGTGTTTATCCTTTATTCTTTTCAGAGCTTTGATCAAAGTAAAAATGGGAGGCTTCGGCTGGACGACTTCATATCGC TCTGTATATTCTTACAATCAGCTCGGTATGTTCGCACTTTGTACAATTTCCAGGAAAGCTTTGTGGTTCTAACAGGGCCC CCATTTTTCCAACATAGCACTGAATTTTCATTGTATTTTTCTCAATGATGTTATATTAAGGATCTTTTGTTGTTTCTCTC AGGAATCTGTTTAATTCATTTGACGCAGCGAAACAAGGCCGAGTTACACTTGATCTGAATCAGTTTGTCTATTGCAGTGA GTACACATTGCGCTACCTTATATAATTATTCATGGTTAAGTGTGTGTTTGGAATTTGGATCATCGTTTGTCACAATTGAT TTTGGTAAAATTGATTATTAGTAAAAGTTACTTGAAAATGAATACATGTTTGGATAGACTTACGAAAATGTGATCTTTGT TCGGTAATGTTGTGAAACGCAGTTGTAAAATCTCACAAGTAATTATGTTTAACACATAAACTACTCTCTCTAGCTTCTAG CGAGATTAATTTTAGGTCTGAAATCAATTTTCCACAATTACTCTCAAACATCAATATTTTCCTCTAGAATTGATTTTATT CATTTTACTCAACCAAAATTAAGTATTAGGTATTTAGGTTTCCCAACGGGAAACTAAACACACTGACCTATCAGGGGTCA AACACCAAACTCGCTACCAGTTCGGTGTTAGTCTTAAAATATTTACTCAAATGGGATTTTTCTTGCCATGTTGGTAGAAA CAGATAACAATCTGTTTTTTCCCCCTAATCCGCAATTCCGCATGCAATGCATAAGATTGTGTCACATGGCAATTATGTAG GATATTCAGCTGCTCAAAATATTCAAATAATTATTCTGTTGTATGTACTTCAACTGGATTTTGCAATTTGGTGTTTTAGC CGTCCAGCACTTGACACTTTGTTTCAAGGAGCTCGGTTCAAATCTGAAGAGATGCATTTTGTTATTTTGTTGCTTCTATC AAAACAAAGTGGCCTGCCATTTAAAATGCAATAAAAAAGAGATGTCCATTCTCGGAATGATGCACTGTTAGGGCACGGAC AAAAAAGAATAGCCGGTTCTTTGGGGTCAATAATTGGGGATTGGTTTTAATGTCATCCTAATTGGTTTTAATGCCATCCC TTTAAATGGTACTTTACTAAAATACCCTTAAAAATCAATATCATCCCTTACATTCCCTTCACCATTATCTCCACCATCCT CTTCCTTCCTTTCCTCATTAATCTTCACCATTATCAACACCATCCTCTTCATTTTCTTCTTTAATCTTCACCATTCTCAC CACCATCCTCTTCATTTTCTTCTTTAATCTCCACCATTGTCACCACCATCCATCCTCTTCCTTTTCTTCATCAATCTTAA CCTTCCCTCACCACCATCCTCCTCCCACCTTAAACCTACCTCACCCGTAATCATCTTCTTCATCTCACCCATCACCATTG GCTCTTGCAATGCAGCAAAACCAATTAAGATGACATTAAAACCAATTTCCTCAATAGTATTGACGTAGCGCCAACTATTC AGTTCATATTCTATCACTCAAAACATCGTACAGTGTGGTTTTAGGATTTTGTGGGGTAGAGCTAGAAACTATTGCTCTAG TAATCCAGTCCATTTGCCCATACTGTTAAGCTGCTCCTGCAGTACATGCTCAACCATTTTTGTCTCTTTAGCTGTTGTTC TTTTTTATTGTCATTTGGTTTGCTACTATGCTAATATTAACTCGTCATATTAATTTATATTTTTGACACTCTTCTCTTTT ACTTTCTGTGCAGCTGCCAATTGTAGAATATGATTCAACTATGTGACGGCCTGTGAAGATGATCTACAAATACTGCACTT TGTAAAACACCTCAAACTCATAGTTTAGAGGTGATGATCAGCTAGGAGACTAATTTCCCTTTGTCTGTAAAATGCTATAT AGCTTGTAGTTTTTGTCAGAAACAAGCAGTTTTCTTTCTCTAATCCTCATGCAATGCATGAGATGTATTCATGCAAACTT TGTGGCTGTGCTTAGTTATAAATGATTATGATAAAACATGAAAATCTTAAAGATACTTGAGTATCTCTCAAGTAAATTAC TTGCAATATGAAAATAACATAGATTCCTGATAGAGAAAAGTACTCTATTCAATAAACTGCACATCCGCACAGACATATAC AGACCAAAATTTGAAAAGAAAGAAAGATTAAAAAGGGTAAGGATGCTGCAACTTCTGTTGCTAGGTTTATACAAGCAAAA AAACCTCAAACACGTTCTGTGAAATGACATGCATTGATTCCTTAATTACCATCCAGTACGAAATGGGCTGGTTCTACTTT TGCAGCACAACCATACTTCAACGAACTGTACTTCCTATATACTCCAGTGAGTTTCCCTGATCCAGCTTTCTGATGGTAAG TAACCATCAGCCTTGAGCATTCTCTGACAGCATACAGAAAGATTCAAAGTTACTATTTATGTCATCATACTTTAGAAAAT TTATGACATTGCTAAAACAACTCACAGAAGCTGCTCTTCTGAGTAACCAGTATACCACTCGCTGGTCTTAGTCCATTGCT TAAACTGGTATAGACTGCATTGAGCTGTGTATATGGCTGCAGCAGCTAGCAGAGATGGTGAAAACTTCAGCATTTTGCAC TCCACCAAGCAAAGTTCGATCAAGAAGAAGGACAAGAGCTCCAGCTGATACATGTCCACATATCCCATACTTGTTTGGTT ACATCACTTTTGATGTTTATGTAGCAAAACAGTGTTATTTTGAAGTTTATGTTTGCAAAACAGTGTTACATTACATACCT TTTTGTCAGAATAAGCTGCCTTAAGAAATCTTCTCATAAACACATACGGAGTAGGCACAGACAAGTTGAATTGCAAGGTG TTCACCATTAGCTTCTCCTATTGGCATATCCGCATATGTTAATAAGATACATTTCAAAAATTA
CDS sequence (LotjaGi1g1v0555900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTGTTGATACTGTTTTGAGCAGAATGGATGAAATGGAGAAAAAGGCAGTGCTCCGGGAGTGGTTCGACCGAGTTGA CTCGGAGAAAACTGGAAGCATAACAGCGCCCCAACTCAAGACGGCCCTGGCCGTGGGCAACCTCGAGTTTCCGCTCTCAG TTGTTCAGCAGATGATCAGGATGTGCGACTTTGATAGGAATGGTACCATGAGCTTTCAAGAATTTGTTGCTCTCAACACC TTCCTTCTTAAGGTTCAGCATGCATTTTCTGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGC TTTGGTAAAAATTGGTTTCATGCTGGATTCTCCTGCTTTCTACTCTGTCTGTGAGAGCTTTGATCAAAGTAAAAATGGGA GGCTTCGGCTGGACGACTTCATATCGCTCTGTATATTCTTACAATCAGCTCGGAATCTGTTTAATTCATTTGACGCAGCG AAACAAGGCCGAGTTACACTTGATCTGAATCAGTTTGTCTATTGCACTGCCAATTGTAGAATATGA
Protein sequence (LotjaGi1g1v0555900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVDTVLSRMDEMEKKAVLREWFDRVDSEKTGSITAPQLKTALAVGNLEFPLSVVQQMIRMCDFDRNGTMSFQEFVALNT FLLKVQHAFSDLERGRGFLVPDDVFEALVKIGFMLDSPAFYSVCESFDQSKNGRLRLDDFISLCIFLQSARNLFNSFDAA KQGRVTLDLNQFVYCTANCRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 179 | 176 | 3.3E-36 | – | |
| PANTHER | 12 | 180 | 169 | 9.5E-60 | – | |
| PANTHER | 12 | 180 | 169 | 9.5E-60 | – | |
| SUPERFAMILY | 14 | 177 | 164 | 2.99E-31 | ||
| ProSiteProfiles | 14 | 49 | 36 | 9.994 | ||
| CDD | 18 | 179 | 162 | 6.65983E-69 | – | |
| SMART | 18 | 46 | 29 | 16.0 | ||
| Pfam | 31 | 78 | 48 | 3.2E-5 | – | |
| ProSiteProfiles | 50 | 85 | 36 | 10.58 | ||
| SMART | 54 | 82 | 29 | 0.087 | ||
| ProSitePatterns | 63 | 75 | 13 | - | ||
| ProSiteProfiles | 115 | 150 | 36 | 6.48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi1g1v0555900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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