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LotjaGi1g1v0557300.1

Overview

Field Value
Gene ID LotjaGi1g1v0557300
Transcript ID LotjaGi1g1v0557300.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Histone chaperone; TAIR: AT1G66740.1 ASF1 like histone chaperone; Swiss-Prot: sp|Q9C9M6|ASF1A_ARATH Probable histone chaperone ASF1A; TrEMBL-Plants: tr|I3SYQ0|I3SYQ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0557300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:108957993..108959643) extracted from Lotus japonicus Gifu genome v1.2.

AAATGATTTAGGTTTGAAGCAGGGTTTTACATATTTGTGAGTTTGAGCTCGCTCGCTCGCTCGCTCTTGGTTTCGTTCTT TCTTCAAACCCGCTCCCGCCAACATTTTTCGCTGTTTTGCGTTCTCTATTTGAGAGGAGCTCTCTTCTCTCTTCTCTCTC ACTCGCTCTCTCAGAAGTAGAAGAAGAAGAAGCATGAGTGCGGTGAACATCACGAACGTCACCGTCCTCGATAACCCCGC TTCCTTCCTCACCCCCTTTCAGTTCGAGATTTCCTATGAGTGCTTGACTTCTCTCAAAGATGGTTCGTTCCTTTATCTTC TTTCCTTTCTTTTATCGTTCTGCAAAATTAGGGTTTCATTTTTCTCCATTGCTTTCTCAATGTTTATTCTAGATAGGTTA GGGTTTCTTGTTTTCAATTCATGCCTACAGATCTTCATTGTATTAATTGTGTGTGTGTGTGTGTGTGTGTGTCTGGAAAC AAACCGTGATCTGAATTTTCGTGTCAAGTTTAGGGTTTATAAGTTATTTTTCTATAAGCTTCACTGTGATTAATTAAATT CCTTGATTCATATTGCTGGTCTACTTTATCTTGTTTGGTTGTCACAATGCATGCTGTCATTTGAGTACAGATTTGGAATG GAAGCTCATTTACGTTGGATCTGCCGAGGATGAGACTTACGACCAATTGTTAGAGAGTGTCCTTGTGGGTCCTGTCAATG TTGGAAACTATCGCTTTGTTTTGCAGGCAAGCTTAATTAATCACTACTAGTATTTCGAATTCTGTTTTGTGTCTTGCGAT TGCTTTTAGATTCTAACTTTTGAATCTTGTTTTGGCTGCAGGCTGATCCACCGGACCCGTCAAAGATTCGTGATGAAGAT ATAATTGGTGTCACCGTGCTTCTGTTGACCTGCTCTTATCTGGGTCAGGAATTTATCCGCGTCGGTTATTATGTGAACAA TGATTATGATGATGAGCAGCTGAGAGAGGAACCTCCACCAAAGGTTCTAGTTGATAAGGTTCAGAGGAACATTTTATCTG ACAAACCAAGGGTCACCAAGTTTCCCATCAATTTCCACCCTGAGAACAACGTAAATGAAGAGCAACCCCCTCAAAATGAC GAGCAGCCCCCTCAAAATGATGAACAACCCCCTCAACCTGAGCCCTCATCTGAAGCTGAAGAAGGTCCACTTGCTTTAGT TGGTCGTGATCCCCCAAATGAGGGGGATTCTTAACATTTTGTAGGTATACAGACTTTTCAATTCCTAAATCTCCAACTTT ACATTCACTGTATGGATGCAATTTTGCGTATCTAGTATTGATGATGTGAATGATGAGATTTATGAATTCTTTTGGAAGTA GGAGACCTTTGAAACACTAGGTTCAAAATGCTTGTAATGTGTTAAAACCAGTTTCTATCCGTGAAGATCTGCAATGCAAA CCCGATTTCATTGATGATCTTGCTGTTTCACTTTGTGAGCACAGAGGCTTAATCATAATTCATTTTTTGTTTTTCCTTTT ATTTAGCTTACTGTGGATTTTTGCTTAATAGTACATGACATACTAGGGCCAGCAGGAGCTGAGTCAGCTCATTGTTTATA TGTGAATAACTCAATGAGCTCAAATTTTGGGTAAGGTGAATTGAGTTTCAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0557300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTGCGGTGAACATCACGAACGTCACCGTCCTCGATAACCCCGCTTCCTTCCTCACCCCCTTTCAGTTCGAGATTTC CTATGAGTGCTTGACTTCTCTCAAAGATGATTTGGAATGGAAGCTCATTTACGTTGGATCTGCCGAGGATGAGACTTACG ACCAATTGTTAGAGAGTGTCCTTGTGGGTCCTGTCAATGTTGGAAACTATCGCTTTGTTTTGCAGGCTGATCCACCGGAC CCGTCAAAGATTCGTGATGAAGATATAATTGGTGTCACCGTGCTTCTGTTGACCTGCTCTTATCTGGGTCAGGAATTTAT CCGCGTCGGTTATTATGTGAACAATGATTATGATGATGAGCAGCTGAGAGAGGAACCTCCACCAAAGGTTCTAGTTGATA AGGTTCAGAGGAACATTTTATCTGACAAACCAAGGGTCACCAAGTTTCCCATCAATTTCCACCCTGAGAACAACGTAAAT GAAGAGCAACCCCCTCAAAATGACGAGCAGCCCCCTCAAAATGATGAACAACCCCCTCAACCTGAGCCCTCATCTGAAGC TGAAGAAGGTCCACTTGCTTTAGTTGGTCGTGATCCCCCAAATGAGGGGGATTCTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0557300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSAVNITNVTVLDNPASFLTPFQFEISYECLTSLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPD PSKIRDEDIIGVTVLLLTCSYLGQEFIRVGYYVNNDYDDEQLREEPPPKVLVDKVQRNILSDKPRVTKFPINFHPENNVN EEQPPQNDEQPPQNDEQPPQPEPSSEAEEGPLALVGRDPPNEGDS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12040:SF18
1 183 183 1.7E-113 –
Pfam
PF04729
1 153 153 9.1E-70
IPR006818
PANTHER
PTHR12040
1 183 183 1.7E-113
IPR006818
Gene3D
G3DSA:2.60.40.1490
1 170 170 4.1E-78
IPR036747
SUPERFAMILY
SSF101546
1 153 153 1.01E-66
IPR036747
MobiDBLite
mobidb-lite
146 205 60 - –
MobiDBLite
mobidb-lite
153 170 18 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006333
Biological process Chromatin assembly or disassembly The formation or destruction of chromatin structures.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0557300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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