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GO:0006325

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Chromatin organization
Full defintion Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
Subterm of

Relationships

The relationship of GO:0006325 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCvw
PMID
Characterization of the RNA content of chromatin.Mondal T, Rasmussen M, Pandey GK, Isaksson A, Kanduri C
Genome Res. 2010 Jul; 20 (7): 899–907.PMID: 20404130

Noncoding RNA (ncRNA) constitutes a significant portion of the mammalian transcriptome. Emerging evidence suggests that it regulates gene expression in cis or trans by modulating the chromatin structure. To uncover the functional role of ncRNA in chromatin organization, we deep sequenced chromatin-associated RNAs (CARs) from human fibroblast (HF) cells. This resulted in the identification of 141 intronic regions and 74 intergenic regions harboring CARs. The intronic and intergenic CARs show significant conservation across 44 species of placental mammals. Functional characterization of one of the intergenic CARs, Intergenic10, revealed that it regulates gene expression of neighboring genes through modulating the chromatin structure in cis. Our data suggest that ncRNA is an integral component of chromatin and that it may regulate various biological functions through fine-tuning of the chromatin architecture.

Associated Lotus transcripts 16

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0083899.1
– PREDICTED: protein HIRA-like [Glycine max] gi|356543582|ref|XP_003540239.1|
GO terms
3
Lj1g3v1697850.1
– PREDICTED: nuA4 complex subunit EAF3 homolog [Glycine max] gi|356510513|ref|XP_003523982.1|
GO terms
3
Lj1g3v3891760.1
– PREDICTED: protein HIRA-like isoform X1 [Cicer arietinum] gi|502145733|ref|XP_004506155.1|
GO terms
3
Lj2g3v2658290.1
– PREDICTED: histone acetyltransferase type B catalytic subunit-like [Glycine max] gi|356551642|ref|XP_003544183.1|
GO terms
1
Lj3g3v1149120.1
– PREDICTED: protein HIRA-like [Glycine max] gi|356543582|ref|XP_003540239.1|
GO terms
3
Lj4g3v0803480.1
– PREDICTED: nuA4 complex subunit EAF3 homolog [Glycine max] gi|356511911|ref|XP_003524665.1|
GO terms
3
LotjaGi1g1v0086700.1
– Histone acetyltransferase; TAIR: AT5G56740.1 histone acetyltransferase of the GNAT family 2; Swiss-Prot: sp|Q9FJT8|HATB_ARATH Histone acetyltransferase type B catalytic subunit; TrEMBL-Plants: tr|I1M828|I1M828_SOYBN Histone acetyltransferase; Found in the gene: LotjaGi1g1v0086700
GO terms
1
LotjaGi1g1v0358500.1
– Mortality factor 4-like protein 1; TAIR: AT1G02740.1 MRG family protein; Swiss-Prot: sp|Q4V3E2|MRG2_ARATH Protein MRG2; TrEMBL-Plants: tr|A0A151TTR4|A0A151TTR4_CAJCA Chromatin modification-related protein eaf3; Found in the gene: LotjaGi1g1v0358500
GO terms
3
LotjaGi1g1v0358500.2
– Mortality factor 4-like protein 1; TAIR: AT1G02740.1 MRG family protein; Swiss-Prot: sp|Q4V3E2|MRG2_ARATH Protein MRG2; TrEMBL-Plants: tr|A0A0B2PA75|A0A0B2PA75_GLYSO Chromatin modification-related protein EAF3; Found in the gene: LotjaGi1g1v0358500
GO terms
3
LotjaGi3g1v0175400.1
– WD-repeat protein, putative; TAIR: AT3G44530.2 histone chaperone HIRA-like protein; Swiss-Prot: sp|Q9LXN4|HIRA_ARATH Protein HIRA; TrEMBL-Plants: tr|K7LVP9|K7LVP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0175400
GO terms
3
LotjaGi3g1v0175400.2
– WD-repeat protein, putative; TAIR: AT3G44530.2 histone chaperone HIRA-like protein; Swiss-Prot: sp|Q9LXN4|HIRA_ARATH Protein HIRA; TrEMBL-Plants: tr|K7LVP9|K7LVP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0175400
GO terms
3
LotjaGi3g1v0175400.3
– Protein HIRA; TAIR: AT3G44530.3 histone chaperone HIRA-like protein; Swiss-Prot: sp|Q9LXN4|HIRA_ARATH Protein HIRA; TrEMBL-Plants: tr|K7LVP9|K7LVP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0175400
GO terms
3
LotjaGi4g1v0099900.1
– Mortality factor 4-like protein 1; TAIR: AT4G37280.1 MRG family protein; Swiss-Prot: sp|Q94C32|MRG1_ARATH Protein MRG1; TrEMBL-Plants: tr|I1K283|I1K283_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099900
GO terms
3
LotjaGi4g1v0099900.2
– Mortality factor 4-like protein 1; TAIR: AT4G37280.1 MRG family protein; Swiss-Prot: sp|Q94C32|MRG1_ARATH Protein MRG1; TrEMBL-Plants: tr|I1K283|I1K283_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099900
GO terms
3
LotjaGi4g1v0099900.3
– Mortality factor 4-like protein 1; TAIR: AT4G37280.1 MRG family protein; Swiss-Prot: sp|Q94C32|MRG1_ARATH Protein MRG1; TrEMBL-Plants: tr|I1K283|I1K283_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0099900
GO terms
3
LotjaGi4g1v0100000_LC.1
– Mortality factor 4-like protein 1; TAIR: AT4G37280.1 MRG family protein; Swiss-Prot: sp|Q94C32|MRG1_ARATH Protein MRG1; TrEMBL-Plants: tr|I1K283|I1K283_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0100000_LC
GO terms
3

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0006355
Biological process Regulation of transcription, DNA-templated 1 6.25